© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9061.t1 |
| Gene name | |
| Location | scaffold_41:41187..44653 |
| Strand | - |
| Gene length (bp) | 3466 |
| Transcript length (bp) | 2232 |
| Coding sequence length (bp) | 2232 |
| Protein length (aa) | 744 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02518 | HATPase_c | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 1.3E-25 | 416 | 533 |
| PF00072 | Response_reg | Response regulator receiver domain | 7.6E-18 | 570 | 659 |
| PF00512 | HisKA | His Kinase A (phospho-acceptor) domain | 1.6E-16 | 306 | 370 |
| PF08448 | PAS_4 | PAS fold | 2.7E-05 | 53 | 143 |
| PF00989 | PAS | PAS fold | 4.9E-08 | 186 | 284 |
| PF13426 | PAS_9 | PAS domain | 1.6E-09 | 185 | 287 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000155 | phosphorelay sensor kinase activity | Yes |
| GO:0000160 | phosphorelay signal transduction system | Yes |
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0007165 | signal transduction | Yes |
| GO:0008150 | biological_process | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0050789 | regulation of biological process | No |
| GO:0004673 | protein histidine kinase activity | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0016740 | transferase activity | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0016301 | kinase activity | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups | No |
| GO:0004672 | protein kinase activity | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0003824 | catalytic activity | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:0065007 | biological regulation | No |
| GO:0003674 | molecular_function | No |
| GO:0035556 | intracellular signal transduction | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| GO:0016775 | phosphotransferase activity, nitrogenous group as acceptor | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0009987 | cellular process | No |
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor | No |
| GO:0140299 | small molecule sensor activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 119.91 | 72.40 | 167.42 |
| 5d_25C | Five days - 25 degrees Celsius | 251.70 | 143.05 | 360.35 |
| 7d_25C | Seven days - 25 degrees Celsius | 292.30 | 162.57 | 422.02 |
| 10d_25C | Ten days - 25 degrees Celsius | 409.77 | 221.06 | 598.47 |
| 7d_15C | Seven days - 15 degrees Celsius | 207.33 | 115.50 | 299.15 |
| 7d_30C | Seven days - 30 degrees Celsius | 275.71 | 153.81 | 397.62 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.014377 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.621296 | no |
| 5d_25C | 7d_15C | 0.494797 | no |
| 5d_25C | 7d_30C | 0.781666 | no |
| 5d_25C | 10d_25C | 0.039155 | yes |
| 7d_25C | 7d_15C | 0.169389 | no |
| 7d_25C | 7d_30C | 0.872729 | no |
| 7d_25C | 10d_25C | 0.179991 | no |
| 7d_15C | 7d_30C | 0.283057 | no |
| 7d_15C | 10d_25C | 0.001804 | yes |
| 7d_30C | 10d_25C | 0.104111 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9061.t1 MPVDQMLHLRIDCPMNNVAMVITPPAESDLNLENKSLEQPVVGSLSRIYRFTPKPTLVLDGALRIVEVSNSHVEV FKHSRDQLLAANVYDLPPSILPAPDIASLIGALGTAISTREVQVIQRVHVAKVDAFFSLSVTPIFEDDSLIYMLL EAQRIKHHRHRSNSISDDAYPNEIYKILVDTVRDYAIFMLDTRGHIATWNSGAAILKGYTSSEIIGQHFSIFYGR DDREIKKPVRELEVCLQEGKLEDEGWRYHKDGNRFWANVMITAIYQNGSHVGFVKVTRDMTERRATEARLIDAFE ESAKLKSDFLANMSHELRTPMNGMLLALTMLMRTELTDDQREFGSILEDSTSILLQVINDVLDYSKLSSGTFPLN TDVVHIPDVISAVVRNCQSALKPGVKIMGDVSAGFPPNLKGDPLRFRQVLQNMVTNAVKFTESGHVRVHATYTID EKDPDMYVISTQVVDTGIGVPEDASNTLFTPFTRFADTATKRYQGTGLGLSICKSLAELMGGAVGFHANPDGRGS VFWMTAKMARLTSPVSTVKQRLQPAIPEALDNSASLEKIAPHKHILLVEDNKVNQLIMLKLLSSLGFKRVDAAWD GAEAVRMVKQKPLAYNVILMDISMPVMDGLTATEHIRRMKLDMPILALTGNALKGDAETLVRLIMYWLRVNLSGV VFFPRIMFGELAEERNPSYGPRVTRLNFPRGVDLVWSRYEWISSILALFGCRGLSIVGQLAVLPLGWV* |
| Coding | >Pro_DTO377G3_2|g9061.t1 ATGCCTGTGGATCAGATGCTCCACCTGAGAATCGACTGTCCTATGAACAATGTCGCGATGGTGATCACGCCTCCG GCCGAGAGTGACTTGAATCTGGAGAACAAATCCCTTGAACAGCCCGTTGTCGGATCGTTGAGTCGCATCTATCGA TTTACACCGAAACCGACTCTCGTTTTAGACGGCGCTCTGCGAATCGTCGAAGTGTCCAACAGTCATGTGGAAGTC TTCAAGCACTCACGAGACCAACTGTTGGCAGCGAATGTCTACGATCTTCCCCCCTCCATCCTCCCAGCCCCCGAT ATCGCCTCCCTGATCGGGGCTCTTGGCACTGCCATATCAACTCGCGAAGTGCAGGTCATCCAGCGTGTTCACGTG GCAAAAGTCGACGCTTTCTTCTCACTTAGCGTGACACCCATCTTTGAAGATGACTCGCTGATCTACATGCTACTG GAAGCCCAGCGGATCAAACATCACCGGCATCGGTCGAATTCCATCAGCGACGATGCCTATCCCAACGAAATTTAC AAAATCTTGGTCGACACCGTGAGGGATTATGCCATTTTCATGCTCGATACGCGCGGCCATATTGCGACATGGAAT TCGGGCGCCGCTATTCTGAAGGGATACACATCCTCCGAGATCATCGGCCAGCATTTCTCCATCTTTTACGGTCGC GATGACCGCGAAATAAAAAAACCCGTCCGCGAGCTGGAGGTCTGTTTACAAGAAGGAAAACTGGAGGATGAGGGC TGGCGTTATCACAAGGATGGCAACCGGTTTTGGGCCAATGTCATGATCACTGCCATCTATCAGAACGGCAGCCAT GTGGGATTCGTGAAAGTTACCCGCGACATGACTGAACGCCGGGCGACAGAGGCGCGTTTGATTGACGCCTTTGAA GAATCGGCCAAGCTCAAGTCCGATTTCTTGGCCAACATGTCCCACGAATTGCGCACCCCGATGAATGGCATGCTC TTGGCTTTGACAATGCTAATGAGGACCGAATTGACTGATGACCAGCGGGAATTCGGATCCATCCTGGAAGACTCA ACATCTATCTTGCTGCAGGTCATTAACGATGTCCTAGATTATTCCAAGCTATCGTCGGGAACCTTCCCCTTGAAC ACAGACGTTGTCCACATCCCCGACGTGATCTCGGCTGTCGTTCGGAATTGTCAGTCGGCGCTGAAGCCCGGTGTC AAAATCATGGGCGATGTAAGCGCGGGCTTTCCTCCAAACCTCAAAGGTGACCCGCTGCGATTCCGCCAAGTTCTG CAAAATATGGTCACCAACGCAGTGAAATTCACCGAGAGTGGTCATGTTCGAGTTCATGCCACCTATACCATCGAT GAAAAGGACCCCGATATGTATGTAATCTCCACGCAGGTAGTGGACACTGGTATCGGCGTACCCGAAGATGCCTCA AACACCCTCTTCACCCCCTTCACGCGATTCGCGGACACGGCCACAAAAAGGTACCAGGGTACGGGCCTTGGCCTG TCGATATGCAAGAGCCTGGCTGAATTGATGGGTGGAGCGGTTGGTTTCCATGCCAATCCCGACGGACGCGGTAGT GTGTTCTGGATGACAGCCAAAATGGCTCGCCTTACCTCGCCAGTGTCTACAGTGAAGCAGAGATTGCAACCGGCT ATACCTGAGGCATTGGATAATTCCGCCTCGCTCGAGAAGATCGCCCCACACAAACACATCCTCCTTGTCGAAGAC AACAAGGTCAATCAACTTATTATGTTAAAACTTCTCAGCAGCCTGGGTTTCAAGCGCGTCGATGCTGCCTGGGAT GGAGCGGAAGCAGTGCGTATGGTGAAGCAGAAGCCTTTGGCCTATAATGTCATCCTGATGGACATCAGCATGCCG GTCATGGATGGATTAACCGCCACAGAGCACATTCGACGGATGAAACTCGATATGCCCATCCTTGCGTTGACGGGC AATGCTCTCAAGGGAGACGCAGAGACCCTTGTGCGTTTGATCATGTACTGGTTGCGAGTCAATCTCTCAGGGGTA GTTTTTTTCCCGAGGATCATGTTCGGAGAACTTGCCGAAGAACGCAACCCTTCATATGGACCCCGTGTGACCCGC CTTAACTTTCCGAGGGGTGTTGATTTGGTATGGTCACGTTATGAATGGATAAGCTCTATCCTTGCCCTGTTTGGT TGCCGGGGTCTTAGCATCGTTGGTCAACTGGCTGTCCTTCCTCTTGGGTGGGTTTAG |
| Transcript | >Pro_DTO377G3_2|g9061.t1 ATGCCTGTGGATCAGATGCTCCACCTGAGAATCGACTGTCCTATGAACAATGTCGCGATGGTGATCACGCCTCCG GCCGAGAGTGACTTGAATCTGGAGAACAAATCCCTTGAACAGCCCGTTGTCGGATCGTTGAGTCGCATCTATCGA TTTACACCGAAACCGACTCTCGTTTTAGACGGCGCTCTGCGAATCGTCGAAGTGTCCAACAGTCATGTGGAAGTC TTCAAGCACTCACGAGACCAACTGTTGGCAGCGAATGTCTACGATCTTCCCCCCTCCATCCTCCCAGCCCCCGAT ATCGCCTCCCTGATCGGGGCTCTTGGCACTGCCATATCAACTCGCGAAGTGCAGGTCATCCAGCGTGTTCACGTG GCAAAAGTCGACGCTTTCTTCTCACTTAGCGTGACACCCATCTTTGAAGATGACTCGCTGATCTACATGCTACTG GAAGCCCAGCGGATCAAACATCACCGGCATCGGTCGAATTCCATCAGCGACGATGCCTATCCCAACGAAATTTAC AAAATCTTGGTCGACACCGTGAGGGATTATGCCATTTTCATGCTCGATACGCGCGGCCATATTGCGACATGGAAT TCGGGCGCCGCTATTCTGAAGGGATACACATCCTCCGAGATCATCGGCCAGCATTTCTCCATCTTTTACGGTCGC GATGACCGCGAAATAAAAAAACCCGTCCGCGAGCTGGAGGTCTGTTTACAAGAAGGAAAACTGGAGGATGAGGGC TGGCGTTATCACAAGGATGGCAACCGGTTTTGGGCCAATGTCATGATCACTGCCATCTATCAGAACGGCAGCCAT GTGGGATTCGTGAAAGTTACCCGCGACATGACTGAACGCCGGGCGACAGAGGCGCGTTTGATTGACGCCTTTGAA GAATCGGCCAAGCTCAAGTCCGATTTCTTGGCCAACATGTCCCACGAATTGCGCACCCCGATGAATGGCATGCTC TTGGCTTTGACAATGCTAATGAGGACCGAATTGACTGATGACCAGCGGGAATTCGGATCCATCCTGGAAGACTCA ACATCTATCTTGCTGCAGGTCATTAACGATGTCCTAGATTATTCCAAGCTATCGTCGGGAACCTTCCCCTTGAAC ACAGACGTTGTCCACATCCCCGACGTGATCTCGGCTGTCGTTCGGAATTGTCAGTCGGCGCTGAAGCCCGGTGTC AAAATCATGGGCGATGTAAGCGCGGGCTTTCCTCCAAACCTCAAAGGTGACCCGCTGCGATTCCGCCAAGTTCTG CAAAATATGGTCACCAACGCAGTGAAATTCACCGAGAGTGGTCATGTTCGAGTTCATGCCACCTATACCATCGAT GAAAAGGACCCCGATATGTATGTAATCTCCACGCAGGTAGTGGACACTGGTATCGGCGTACCCGAAGATGCCTCA AACACCCTCTTCACCCCCTTCACGCGATTCGCGGACACGGCCACAAAAAGGTACCAGGGTACGGGCCTTGGCCTG TCGATATGCAAGAGCCTGGCTGAATTGATGGGTGGAGCGGTTGGTTTCCATGCCAATCCCGACGGACGCGGTAGT GTGTTCTGGATGACAGCCAAAATGGCTCGCCTTACCTCGCCAGTGTCTACAGTGAAGCAGAGATTGCAACCGGCT ATACCTGAGGCATTGGATAATTCCGCCTCGCTCGAGAAGATCGCCCCACACAAACACATCCTCCTTGTCGAAGAC AACAAGGTCAATCAACTTATTATGTTAAAACTTCTCAGCAGCCTGGGTTTCAAGCGCGTCGATGCTGCCTGGGAT GGAGCGGAAGCAGTGCGTATGGTGAAGCAGAAGCCTTTGGCCTATAATGTCATCCTGATGGACATCAGCATGCCG GTCATGGATGGATTAACCGCCACAGAGCACATTCGACGGATGAAACTCGATATGCCCATCCTTGCGTTGACGGGC AATGCTCTCAAGGGAGACGCAGAGACCCTTGTGCGTTTGATCATGTACTGGTTGCGAGTCAATCTCTCAGGGGTA GTTTTTTTCCCGAGGATCATGTTCGGAGAACTTGCCGAAGAACGCAACCCTTCATATGGACCCCGTGTGACCCGC CTTAACTTTCCGAGGGGTGTTGATTTGGTATGGTCACGTTATGAATGGATAAGCTCTATCCTTGCCCTGTTTGGT TGCCGGGGTCTTAGCATCGTTGGTCAACTGGCTGTCCTTCCTCTTGGGTGGGTTTAG |
| Gene | >Pro_DTO377G3_2|g9061.t1 ATGCCTGTGGATCAGATGCTCCACCTGAGAATCGACTGTCCTATGAACAATGTCGCGATGGTGATCACGCCTCCG GCCGAGAGTGACTTGAATCTGGAGAACAAATCCCTTGAACAGCCCGTTGTCGGATCGTTGAGTCGCATCTATCGA TTTACACCGTGAGAACCCGAACCCCTTGGAGGGATAGCATGGATTATTCCCGTTAACCCCTGTAGGAAACCGACT CTCGTTTTAGACGGCGCTCTGCGAATCGTCGAAGTGTCCAACAGTCATGTGGAAGTCTTCAAGCACTCACGAGAC CAACTGTTGGCAGCGAATGTCTACGATCTTCCCCCCTCCATCCTCCCAGCCCCCGATATCGCCTCCCTGATCGGG GCTCTTGGCACTGCCATATCAACTCGCGAAGTGCAGGTCATCCAGCGTGTTCACGTGGCAAAAGTCGACGCTTTC TTCTCACTTAGCGTGACACCCATCTTTGAAGATGACTCGCTGATCTACATGCTACTGGAAGCCCAGCGGATCAAA CATCACCGGCATCGGTCGAATTCCATCAGCGACGATGCCTATCCCAACGAAATTTACAAAATCTTGGTCGACACC GTGAGGGATTATGCCATTTTCATGCTCGATACGCGCGGCCATATTGCGACATGGAATTCGGGCGCCGCTATTCTG AAGGGATACACATCCTCCGAGATCATCGGCCAGCATTTCTCCATCTTTTACGGTCGCGATGACCGCGAAATAAAA AAACCCGTCCGCGAGCTGGAGGTCTGTTTACAAGAAGGAAAACTGGAGGATGAGGGCTGGCGTTATCACAAGGAT GGCAACCGGTTTTGGGCCAATGTCATGATCACTGCCATCTATCAGAACGGCAGCCATGTGGGATTCGTGAAAGTT ACCCGCGACATGACTGAACGCCGGGCGACAGAGGCGCGTTTGATTGACGCCTTTGAAGAATCGGCCAAGCTCAAG TCCGATTTCTTGGCCAACATGTCCCACGAATTGCGCACCCCGATGAATGGCATGCTCTTGGCTTTGACAATGCTA ATGAGGACCGAATTGACTGATGACCAGCGGGAATTCGGATCCATCCTGGAAGACTCAACATCTATCTTGCTGCAG GTCATTAACGATGTCCTAGATTATTCCAAGCTATCGTCGGGAACCTTCCCCTTGAACACAGACGTTGTCCACATC CCCGACGTGATCTCGGCTGTCGTTCGGAATTGTCAGTCGGCGCTGAAGCCCGGTGTCAAAATCATGGGCGATGTA AGCGCGGGCTTTCCTCCAAACCTCAAAGGTGACCCGCTGCGATTCCGCCAAGTTCTGCAAAATATGGTCACCAAC GCAGTGAAATTCACCGAGAGTGGTCATGTTCGAGTTCATGCCACCTATACCATCGATGAAAAGGACCCCGATATG TATGTAATCTCCACGCAGGTAGTGGACACTGGTATCGGCGTACCCGAAGATGCCTCAAACACCCTCTTCACCCCC TTCACGCGATTCGCGGACACGGCCACAAAAAGGTACCAGGGTACGGGCCTTGGCCTGTCGATATGCAAGAGCCTG GCTGAATTGATGGGTGGAGCGGTTGGTTTCCATGCCAATCCCGACGGACGCGGTAGTGTGTTCTGGATGACAGCC AAAATGGCTCGCCTTACCTCGCCAGTGTCTACAGTGAAGCAGAGATTGCAACCGGCTATACCTGAGGCATTGGAT AATTCCGCCTCGCTCGAGAAGATCGCCCCACACAAACACATCCTCCTTGTCGAAGACAACAAGGTCAATCAACTT ATTATGTTAAAACTTCTCAGCAGCCTGGGTTTCAAGCGCGTCGATGCTGCCTGGGATGGAGCGGAAGCAGTGCGT ATGGTGAAGCAGAAGCCTTTGGCCTATAATGTCATCCTGATGGACATCAGCATGCCGGTCATGGATGGATTAACC GCCACAGAGCACATTCGACGGATGAAACTCGATATGCCCATCCTTGCGTTGACGGGCAATGCTCTCAAGGGAGAC GCAGAGACGTATTTGGCGAAGGGGATGGACGATTACATCGCCAAGCCCTTGCATCGGCAGCAGCTGGTGGATTTA TTATGGAAATGGTGTGGATCCTGAATGGTTGGTTATTTCAAATTGAGAAGGGAATTGTGCCCTCGAATATCACGT CAGTTTGAGGCCGCCTTTTGATGCGCTCAAGGCACGGCAGTTGAAATATACCCGTGTCAGTGTCATGGACGAGAG ACCTTGCGGTCGAACCGTCAGTTTGAGAATTTTCAACCACATCCCCTTACCGATGTGGCAGAAGTGCCGCCATTT TCACCTGAACCTTCCAGGCAACAGTCTGCCTATGTCTTTAGTTCTGGGATTTCTGGGAGTTCATTCAAATTTTGA TCTCCAGTTCTCCGCTAATAACCTGCACCCGAACATCGACGGCAATGCCATCCGCCGACATAAAGTTCTCTGCAC ATGAGATACCCCAAGGGCTTCCATCCTTTGCTCGCATGACTTCTGCCTGGAAAAGGCACATGCAACCGTGTTTCT GCCACCGACGTTGCAATTATGCAGCCTTGGGTGGTCTTCTGTATCAACTCTTCAATACCACTCATGAGATCATCC CTATCTGCGGAGTTTAGGCAGCCGTGTAGTGTATGGATGATATTTGCGATGCAAGACTCGCATGGTCCCCCGTAG TGTCCATGGCGTTGGAATAGCCGCCAATCCTTTAAATCGTAAATTGATGCACAGTGTGTGGAGTGCATAAGACTG GACTTTTACCATTTGACCACCTGGGCAAGTATCCCCCGATAATCCCACCGAATTGCAAGATGATGCTTTAACATC AACAGTGGATTCAAGCCTGATCTTGGTCCCGAACCGATTCAAGTTTTTCCCAACATTTCCGAATGTACAGTAGCA ACGACCTCATTTCGGCACCAAAGAACCGGAAATCTTTTGGTTATGATTCGACATTCGACGTCTAATGGTCCAAGC CTTGTGCGTTTGATCATGTACTGGTTGCGAGTCAATCTCTCAGGGGTAGTTTTTTTCCCGAGGTACAACACCGGT GATCCGTTAATTTCGCGTGAGGTCATTGTTCTCATATCGGTAATTGCTAGGATCATGTTCGGAGGTTTGAACCCA ATGGAACCTCTACGACCGAAGACGAAGATACATGTTTCTAAGTGTCTTGAATCTCGTCCACTTGATGGGTTGTAA CGACGCGGTTTTTGAGAACTTGCCGAAGAACGCAACCCTTCATATGGACCCCGTGTGACCCGCCTTAACTTTCCG AGGGGTGTTGATTTGGTATGGTCACGTTATGAATGGCATGTTCAACCCTTAGCGAGATCATTACAGGCTAATGGC AAACAGGATAAGCTCTATCCTTGCCCTGTTTGGTTGCCGGGGTCTTAGCATCGTTGGTCAACTGGCTGTCCTTCC TCTTGGGTGGGTTTAG |