Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g9050.t1
Gene name
Locationscaffold_41:50..1879
Strand+
Gene length (bp)1829
Transcript length (bp)1725
Coding sequence length (bp)1725
Protein length (aa) 575

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01476 LysM LysM domain 4.4E-04 343 387

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.5

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 0.66 0.0 1.33
5d_25C Five days - 25 degrees Celsius 0.11 0.0 0.31
7d_25C Seven days - 25 degrees Celsius 0.27 0.0 0.68
10d_25C Ten days - 25 degrees Celsius 0.12 0.0 0.33
7d_15C Seven days - 15 degrees Celsius 0.07 0.0 0.21
7d_30C Seven days - 30 degrees Celsius 0.07 0.0 0.22

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 1.0 no
3d_25C 7d_25C 1.0 no
3d_25C 7d_15C 1.0 no
3d_25C 7d_30C 1.0 no
3d_25C 10d_25C 1.0 no
5d_25C 7d_25C 1.0 no
5d_25C 7d_15C 1.0 no
5d_25C 7d_30C 1.0 no
5d_25C 10d_25C 1.0 no
7d_25C 7d_15C 1.0 no
7d_25C 7d_30C 1.0 no
7d_25C 10d_25C 1.0 no
7d_15C 7d_30C 1.0 no
7d_15C 10d_25C 1.0 no
7d_30C 10d_25C 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g9050.t1
MGMIQTESPYFQPLPAAPLPFTPGLFPGDPDFTNCTSSSKTCGFSWSMRILDSSTVYLLGAGFYSWFSDYSQKCV
DEDLCQDRGFQIEESYDTWIYNLVTKAISEMVSPTGETPTYAKDNKNGFLSSLLAWIRGSKVVIGGRDLPGFYVW
DANTDADLMTGLPDSCKTSLTQLVGCDSYARLFLAESYRGSLGNDTLTESVCDESCGVSLKRWFDNVASDCKGYN
VSDSAATKYGGQIWSGWNETCLKDTRTGEYCNDLISEYPAVDFLDDMPESEICSFCFVERLGIMQRSSYSFYDEG
FQDQLGTVNAKCGLSVPTAKPPSLDAPPEFLPDPICISNQTYQTVSGDTCDSIALRYNVSSASLVMANNRQLMVC
NDLTAEMDLCIPSSCASTYTLKSNDTCTSIESSGLRQRGDVRKYNSWVEWDCSNLQTSTDFWGHIICLGVQGGTY
TATASIPGVTLAPEESTGYSNSRVAPPANATAAEGTTLKCGKWRVAVKGETCAQICLQESITSSLFVGVNPSLAS
SNCSDGLIVGNAYCVGPNPGWSFSNSTTSLSTQGRTPGSSSMPVSAAIL*
Coding >Pro_DTO377G3_2|g9050.t1
ATGGGAATGATACAAACCGAGTCTCCCTACTTCCAGCCATTGCCTGCTGCACCCTTGCCATTTACGCCTGGTCTA
TTCCCCGGAGACCCTGATTTCACAAACTGCACCTCATCCTCCAAGACTTGTGGCTTCTCATGGAGTATGCGGATT
TTGGACTCTTCAACCGTTTATCTCCTTGGCGCAGGATTCTACAGTTGGTTCTCGGACTATTCGCAGAAATGTGTC
GATGAAGACCTTTGCCAAGACCGTGGGTTCCAAATCGAGGAGAGCTATGATACATGGATCTACAATTTGGTCACC
AAGGCAATTTCCGAGATGGTGAGCCCGACGGGTGAAACCCCAACTTATGCTAAGGACAACAAGAATGGATTTTTA
TCCTCTTTACTTGCTTGGATCCGAGGCTCGAAGGTGGTGATTGGTGGTCGCGACCTCCCAGGCTTTTATGTCTGG
GACGCTAATACTGACGCGGATTTGATGACTGGCCTGCCTGATTCCTGCAAAACCTCACTCACCCAATTAGTCGGA
TGTGATTCGTACGCGCGGCTGTTTTTGGCTGAGAGTTATCGGGGATCATTGGGTAATGACACTCTCACAGAATCA
GTCTGTGATGAAAGTTGCGGCGTCTCATTGAAGCGCTGGTTTGATAATGTTGCTTCTGACTGCAAGGGATACAAT
GTTTCTGATTCCGCTGCCACCAAATATGGTGGACAGATCTGGTCTGGCTGGAACGAAACCTGTCTCAAAGATACC
AGAACGGGAGAATACTGCAATGATTTGATATCCGAATATCCAGCCGTTGACTTCCTAGATGACATGCCGGAATCG
GAAATCTGCTCATTCTGCTTTGTCGAGAGGCTGGGAATTATGCAGCGGTCGTCATACTCCTTCTATGATGAAGGG
TTCCAGGATCAGTTGGGTACCGTCAATGCTAAATGTGGACTGTCTGTTCCGACAGCCAAGCCCCCATCGCTAGAT
GCACCCCCTGAGTTTCTACCTGACCCAATCTGCATCTCGAATCAAACGTATCAGACAGTCTCCGGTGACACATGT
GACTCTATCGCTTTGAGATACAATGTTTCATCTGCTTCCCTGGTCATGGCGAACAATCGCCAGCTCATGGTCTGC
AACGACTTGACTGCAGAGATGGATCTTTGCATACCAAGCAGCTGTGCATCCACATACACCCTCAAGAGCAACGAC
ACCTGTACATCCATCGAATCGTCGGGCCTTCGCCAGCGTGGTGATGTGAGGAAATACAACTCATGGGTTGAATGG
GACTGCTCCAATCTTCAAACATCAACTGACTTCTGGGGCCACATAATTTGCCTCGGCGTTCAAGGAGGTACATAC
ACTGCTACTGCCTCGATTCCGGGAGTTACTCTAGCCCCCGAAGAGAGCACAGGATATTCAAATTCACGCGTCGCG
CCCCCGGCCAATGCTACTGCCGCTGAAGGTACAACCTTGAAGTGTGGCAAGTGGCGCGTTGCTGTGAAGGGAGAG
ACTTGTGCACAGATCTGCCTGCAAGAATCAATCACCTCAAGTCTATTTGTCGGAGTGAACCCGTCTCTCGCAAGT
TCGAATTGTTCCGACGGTTTAATCGTTGGAAATGCATACTGTGTCGGCCCTAATCCGGGATGGTCGTTCTCTAAT
TCGACTACTTCCTTAAGCACCCAAGGAAGGACTCCAGGGAGCAGCTCAATGCCAGTTTCCGCAGCTATTCTTTGA
Transcript >Pro_DTO377G3_2|g9050.t1
ATGGGAATGATACAAACCGAGTCTCCCTACTTCCAGCCATTGCCTGCTGCACCCTTGCCATTTACGCCTGGTCTA
TTCCCCGGAGACCCTGATTTCACAAACTGCACCTCATCCTCCAAGACTTGTGGCTTCTCATGGAGTATGCGGATT
TTGGACTCTTCAACCGTTTATCTCCTTGGCGCAGGATTCTACAGTTGGTTCTCGGACTATTCGCAGAAATGTGTC
GATGAAGACCTTTGCCAAGACCGTGGGTTCCAAATCGAGGAGAGCTATGATACATGGATCTACAATTTGGTCACC
AAGGCAATTTCCGAGATGGTGAGCCCGACGGGTGAAACCCCAACTTATGCTAAGGACAACAAGAATGGATTTTTA
TCCTCTTTACTTGCTTGGATCCGAGGCTCGAAGGTGGTGATTGGTGGTCGCGACCTCCCAGGCTTTTATGTCTGG
GACGCTAATACTGACGCGGATTTGATGACTGGCCTGCCTGATTCCTGCAAAACCTCACTCACCCAATTAGTCGGA
TGTGATTCGTACGCGCGGCTGTTTTTGGCTGAGAGTTATCGGGGATCATTGGGTAATGACACTCTCACAGAATCA
GTCTGTGATGAAAGTTGCGGCGTCTCATTGAAGCGCTGGTTTGATAATGTTGCTTCTGACTGCAAGGGATACAAT
GTTTCTGATTCCGCTGCCACCAAATATGGTGGACAGATCTGGTCTGGCTGGAACGAAACCTGTCTCAAAGATACC
AGAACGGGAGAATACTGCAATGATTTGATATCCGAATATCCAGCCGTTGACTTCCTAGATGACATGCCGGAATCG
GAAATCTGCTCATTCTGCTTTGTCGAGAGGCTGGGAATTATGCAGCGGTCGTCATACTCCTTCTATGATGAAGGG
TTCCAGGATCAGTTGGGTACCGTCAATGCTAAATGTGGACTGTCTGTTCCGACAGCCAAGCCCCCATCGCTAGAT
GCACCCCCTGAGTTTCTACCTGACCCAATCTGCATCTCGAATCAAACGTATCAGACAGTCTCCGGTGACACATGT
GACTCTATCGCTTTGAGATACAATGTTTCATCTGCTTCCCTGGTCATGGCGAACAATCGCCAGCTCATGGTCTGC
AACGACTTGACTGCAGAGATGGATCTTTGCATACCAAGCAGCTGTGCATCCACATACACCCTCAAGAGCAACGAC
ACCTGTACATCCATCGAATCGTCGGGCCTTCGCCAGCGTGGTGATGTGAGGAAATACAACTCATGGGTTGAATGG
GACTGCTCCAATCTTCAAACATCAACTGACTTCTGGGGCCACATAATTTGCCTCGGCGTTCAAGGAGGTACATAC
ACTGCTACTGCCTCGATTCCGGGAGTTACTCTAGCCCCCGAAGAGAGCACAGGATATTCAAATTCACGCGTCGCG
CCCCCGGCCAATGCTACTGCCGCTGAAGGTACAACCTTGAAGTGTGGCAAGTGGCGCGTTGCTGTGAAGGGAGAG
ACTTGTGCACAGATCTGCCTGCAAGAATCAATCACCTCAAGTCTATTTGTCGGAGTGAACCCGTCTCTCGCAAGT
TCGAATTGTTCCGACGGTTTAATCGTTGGAAATGCATACTGTGTCGGCCCTAATCCGGGATGGTCGTTCTCTAAT
TCGACTACTTCCTTAAGCACCCAAGGAAGGACTCCAGGGAGCAGCTCAATGCCAGTTTCCGCAGCTATTCTTTGA
Gene >Pro_DTO377G3_2|g9050.t1
ATGGGAATGATACAAACCGAGTCTCCCTACTTCCAGCCATTGCCTGCTGCACCCTTGCCATTTACGCCTGGTCTA
TTCCCCGGAGACCCTGATTTCACAAACTGCACCTCATCCTCCAAGACTTGTGGCTTCTCATGGAGTATGCGGATT
TTGGACTCTTCAACCGTTTATCTCCTTGGCGCAGGTAAGTTGATGGCGAGAACACTTGGCCATTACTTCAGGCTA
ACGATTCAACAGGATTCTACAGTTGGTTCTCGGACTATTCGCAGAAATGTGTCGATGAAGACCTTTGCCAAGACC
GTGGGTTCCAAATCGAGGAGAGCTATGATACATGGATCTACAATTTGGTCACCAAGGCAATTTCCGAGATGGTGA
GCCCGACGGGTGAAACCCCAACTTATGCTAAGGACAACAAGAATGGATTTTTATCCTCTTTACTTGCTTGGATCC
GAGGCTCGAAGGTGGTGATTGGTGGTCGCGACCTCCCAGGCTTTTATGTCTGGGACGCTAATACTGACGCGGATT
TGATGACTGGCCTGCCTGATTCCTGCAAAACCTCACTCACCCAATTAGTCGGATGTGATTCGTACGCGCGGCTGT
TTTTGGCTGAGAGTTATCGGGGATCATTGGGTAATGACACTCTCACAGAATCAGTCTGTGATGAAAGTTGCGGCG
TCTCATTGAAGCGCTGGTTTGATAATGTTGCTTCTGACTGCAAGGGATACAATGTTTCTGATTCCGCTGCCACCA
AATATGGTGGACAGATCTGGTCTGGCTGGAACGAAACCTGTCTCAAAGATACCAGAACGGGAGAATACTGCAATG
GTAAGGGTATCTCGTGCTCGTTTTCTAAGTCGCTAGTGCTAATGATGGCAGATTTGATATCCGAATATCCAGCCG
TTGACTTCCTAGATGACATGCCGGAATCGGAAATCTGCTCATTCTGCTTTGTCGAGAGGCTGGGAATTATGCAGC
GGTCGTCATACTCCTTCTATGATGAAGGGTTCCAGGATCAGTTGGGTACCGTCAATGCTAAATGTGGACTGTCTG
TTCCGACAGCCAAGCCCCCATCGCTAGATGCACCCCCTGAGTTTCTACCTGACCCAATCTGCATCTCGAATCAAA
CGTATCAGACAGTCTCCGGTGACACATGTGACTCTATCGCTTTGAGATACAATGTTTCATCTGCTTCCCTGGTCA
TGGCGAACAATCGCCAGCTCATGGTCTGCAACGACTTGACTGCAGAGATGGATCTTTGCATACCAAGCAGCTGTG
CATCCACATACACCCTCAAGAGCAACGACACCTGTACATCCATCGAATCGTCGGGCCTTCGCCAGCGTGGTGATG
TGAGGAAATACAACTCATGGGTTGAATGGGACTGCTCCAATCTTCAAACATCAACTGACTTCTGGGGCCACATAA
TTTGCCTCGGCGTTCAAGGAGGTACATACACTGCTACTGCCTCGATTCCGGGAGTTACTCTAGCCCCCGAAGAGA
GCACAGGATATTCAAATTCACGCGTCGCGCCCCCGGCCAATGCTACTGCCGCTGAAGGTACAACCTTGAAGTGTG
GCAAGTGGCGCGTTGCTGTGAAGGGAGAGACTTGTGCACAGATCTGCCTGCAAGAATCAATCACCTCAAGTCTAT
TTGTCGGAGTGAACCCGTCTCTCGCAAGTTCGAATTGTTCCGACGGTTTAATCGTTGGAAATGCATACTGTGTCG
GCCCTAATCCGGGATGGTCGTTCTCTAATTCGACTACTTCCTTAAGCACCCAAGGAAGGACTCCAGGGAGCAGCT
CAATGCCAGTTTCCGCAGCTATTCTTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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