Fungal Genomics

at Utrecht University

General Properties

Protein ID	Pro_DTO377G3_2\|g9050.t1
Gene name
Location	scaffold_41:50..1879
Strand	+
Gene length (bp)	1829
Transcript length (bp)	1725
Coding sequence length (bp)	1725
Protein length (aa)	575

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01476	LysM	LysM domain	4.4E-04	343	387

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 12	0.5

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	0.66	0.0	1.33
5d_25C	Five days - 25 degrees Celsius	0.11	0.0	0.31
7d_25C	Seven days - 25 degrees Celsius	0.27	0.0	0.68
10d_25C	Ten days - 25 degrees Celsius	0.12	0.0	0.33
7d_15C	Seven days - 15 degrees Celsius	0.07	0.0	0.21
7d_30C	Seven days - 30 degrees Celsius	0.07	0.0	0.22

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	1.0	no
3d_25C	7d_25C	1.0	no
3d_25C	7d_15C	1.0	no
3d_25C	7d_30C	1.0	no
3d_25C	10d_25C	1.0	no
5d_25C	7d_25C	1.0	no
5d_25C	7d_15C	1.0	no
5d_25C	7d_30C	1.0	no
5d_25C	10d_25C	1.0	no
7d_25C	7d_15C	1.0	no
7d_25C	7d_30C	1.0	no
7d_25C	10d_25C	1.0	no
7d_15C	7d_30C	1.0	no
7d_15C	10d_25C	1.0	no
7d_30C	10d_25C	1.0	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g9050.t1 MGMIQTESPYFQPLPAAPLPFTPGLFPGDPDFTNCTSSSKTCGFSWSMRILDSSTVYLLGAGFYSWFSDYSQKCV DEDLCQDRGFQIEESYDTWIYNLVTKAISEMVSPTGETPTYAKDNKNGFLSSLLAWIRGSKVVIGGRDLPGFYVW DANTDADLMTGLPDSCKTSLTQLVGCDSYARLFLAESYRGSLGNDTLTESVCDESCGVSLKRWFDNVASDCKGYN VSDSAATKYGGQIWSGWNETCLKDTRTGEYCNDLISEYPAVDFLDDMPESEICSFCFVERLGIMQRSSYSFYDEG FQDQLGTVNAKCGLSVPTAKPPSLDAPPEFLPDPICISNQTYQTVSGDTCDSIALRYNVSSASLVMANNRQLMVC NDLTAEMDLCIPSSCASTYTLKSNDTCTSIESSGLRQRGDVRKYNSWVEWDCSNLQTSTDFWGHIICLGVQGGTY TATASIPGVTLAPEESTGYSNSRVAPPANATAAEGTTLKCGKWRVAVKGETCAQICLQESITSSLFVGVNPSLAS SNCSDGLIVGNAYCVGPNPGWSFSNSTTSLSTQGRTPGSSSMPVSAAIL*
Coding	>Pro_DTO377G3_2\|g9050.t1 ATGGGAATGATACAAACCGAGTCTCCCTACTTCCAGCCATTGCCTGCTGCACCCTTGCCATTTACGCCTGGTCTA TTCCCCGGAGACCCTGATTTCACAAACTGCACCTCATCCTCCAAGACTTGTGGCTTCTCATGGAGTATGCGGATT TTGGACTCTTCAACCGTTTATCTCCTTGGCGCAGGATTCTACAGTTGGTTCTCGGACTATTCGCAGAAATGTGTC GATGAAGACCTTTGCCAAGACCGTGGGTTCCAAATCGAGGAGAGCTATGATACATGGATCTACAATTTGGTCACC AAGGCAATTTCCGAGATGGTGAGCCCGACGGGTGAAACCCCAACTTATGCTAAGGACAACAAGAATGGATTTTTA TCCTCTTTACTTGCTTGGATCCGAGGCTCGAAGGTGGTGATTGGTGGTCGCGACCTCCCAGGCTTTTATGTCTGG GACGCTAATACTGACGCGGATTTGATGACTGGCCTGCCTGATTCCTGCAAAACCTCACTCACCCAATTAGTCGGA TGTGATTCGTACGCGCGGCTGTTTTTGGCTGAGAGTTATCGGGGATCATTGGGTAATGACACTCTCACAGAATCA GTCTGTGATGAAAGTTGCGGCGTCTCATTGAAGCGCTGGTTTGATAATGTTGCTTCTGACTGCAAGGGATACAAT GTTTCTGATTCCGCTGCCACCAAATATGGTGGACAGATCTGGTCTGGCTGGAACGAAACCTGTCTCAAAGATACC AGAACGGGAGAATACTGCAATGATTTGATATCCGAATATCCAGCCGTTGACTTCCTAGATGACATGCCGGAATCG GAAATCTGCTCATTCTGCTTTGTCGAGAGGCTGGGAATTATGCAGCGGTCGTCATACTCCTTCTATGATGAAGGG TTCCAGGATCAGTTGGGTACCGTCAATGCTAAATGTGGACTGTCTGTTCCGACAGCCAAGCCCCCATCGCTAGAT GCACCCCCTGAGTTTCTACCTGACCCAATCTGCATCTCGAATCAAACGTATCAGACAGTCTCCGGTGACACATGT GACTCTATCGCTTTGAGATACAATGTTTCATCTGCTTCCCTGGTCATGGCGAACAATCGCCAGCTCATGGTCTGC AACGACTTGACTGCAGAGATGGATCTTTGCATACCAAGCAGCTGTGCATCCACATACACCCTCAAGAGCAACGAC ACCTGTACATCCATCGAATCGTCGGGCCTTCGCCAGCGTGGTGATGTGAGGAAATACAACTCATGGGTTGAATGG GACTGCTCCAATCTTCAAACATCAACTGACTTCTGGGGCCACATAATTTGCCTCGGCGTTCAAGGAGGTACATAC ACTGCTACTGCCTCGATTCCGGGAGTTACTCTAGCCCCCGAAGAGAGCACAGGATATTCAAATTCACGCGTCGCG CCCCCGGCCAATGCTACTGCCGCTGAAGGTACAACCTTGAAGTGTGGCAAGTGGCGCGTTGCTGTGAAGGGAGAG ACTTGTGCACAGATCTGCCTGCAAGAATCAATCACCTCAAGTCTATTTGTCGGAGTGAACCCGTCTCTCGCAAGT TCGAATTGTTCCGACGGTTTAATCGTTGGAAATGCATACTGTGTCGGCCCTAATCCGGGATGGTCGTTCTCTAAT TCGACTACTTCCTTAAGCACCCAAGGAAGGACTCCAGGGAGCAGCTCAATGCCAGTTTCCGCAGCTATTCTTTGA
Transcript	>Pro_DTO377G3_2\|g9050.t1 ATGGGAATGATACAAACCGAGTCTCCCTACTTCCAGCCATTGCCTGCTGCACCCTTGCCATTTACGCCTGGTCTA TTCCCCGGAGACCCTGATTTCACAAACTGCACCTCATCCTCCAAGACTTGTGGCTTCTCATGGAGTATGCGGATT TTGGACTCTTCAACCGTTTATCTCCTTGGCGCAGGATTCTACAGTTGGTTCTCGGACTATTCGCAGAAATGTGTC GATGAAGACCTTTGCCAAGACCGTGGGTTCCAAATCGAGGAGAGCTATGATACATGGATCTACAATTTGGTCACC AAGGCAATTTCCGAGATGGTGAGCCCGACGGGTGAAACCCCAACTTATGCTAAGGACAACAAGAATGGATTTTTA TCCTCTTTACTTGCTTGGATCCGAGGCTCGAAGGTGGTGATTGGTGGTCGCGACCTCCCAGGCTTTTATGTCTGG GACGCTAATACTGACGCGGATTTGATGACTGGCCTGCCTGATTCCTGCAAAACCTCACTCACCCAATTAGTCGGA TGTGATTCGTACGCGCGGCTGTTTTTGGCTGAGAGTTATCGGGGATCATTGGGTAATGACACTCTCACAGAATCA GTCTGTGATGAAAGTTGCGGCGTCTCATTGAAGCGCTGGTTTGATAATGTTGCTTCTGACTGCAAGGGATACAAT GTTTCTGATTCCGCTGCCACCAAATATGGTGGACAGATCTGGTCTGGCTGGAACGAAACCTGTCTCAAAGATACC AGAACGGGAGAATACTGCAATGATTTGATATCCGAATATCCAGCCGTTGACTTCCTAGATGACATGCCGGAATCG GAAATCTGCTCATTCTGCTTTGTCGAGAGGCTGGGAATTATGCAGCGGTCGTCATACTCCTTCTATGATGAAGGG TTCCAGGATCAGTTGGGTACCGTCAATGCTAAATGTGGACTGTCTGTTCCGACAGCCAAGCCCCCATCGCTAGAT GCACCCCCTGAGTTTCTACCTGACCCAATCTGCATCTCGAATCAAACGTATCAGACAGTCTCCGGTGACACATGT GACTCTATCGCTTTGAGATACAATGTTTCATCTGCTTCCCTGGTCATGGCGAACAATCGCCAGCTCATGGTCTGC AACGACTTGACTGCAGAGATGGATCTTTGCATACCAAGCAGCTGTGCATCCACATACACCCTCAAGAGCAACGAC ACCTGTACATCCATCGAATCGTCGGGCCTTCGCCAGCGTGGTGATGTGAGGAAATACAACTCATGGGTTGAATGG GACTGCTCCAATCTTCAAACATCAACTGACTTCTGGGGCCACATAATTTGCCTCGGCGTTCAAGGAGGTACATAC ACTGCTACTGCCTCGATTCCGGGAGTTACTCTAGCCCCCGAAGAGAGCACAGGATATTCAAATTCACGCGTCGCG CCCCCGGCCAATGCTACTGCCGCTGAAGGTACAACCTTGAAGTGTGGCAAGTGGCGCGTTGCTGTGAAGGGAGAG ACTTGTGCACAGATCTGCCTGCAAGAATCAATCACCTCAAGTCTATTTGTCGGAGTGAACCCGTCTCTCGCAAGT TCGAATTGTTCCGACGGTTTAATCGTTGGAAATGCATACTGTGTCGGCCCTAATCCGGGATGGTCGTTCTCTAAT TCGACTACTTCCTTAAGCACCCAAGGAAGGACTCCAGGGAGCAGCTCAATGCCAGTTTCCGCAGCTATTCTTTGA
Gene	>Pro_DTO377G3_2\|g9050.t1 ATGGGAATGATACAAACCGAGTCTCCCTACTTCCAGCCATTGCCTGCTGCACCCTTGCCATTTACGCCTGGTCTA TTCCCCGGAGACCCTGATTTCACAAACTGCACCTCATCCTCCAAGACTTGTGGCTTCTCATGGAGTATGCGGATT TTGGACTCTTCAACCGTTTATCTCCTTGGCGCAGGTAAGTTGATGGCGAGAACACTTGGCCATTACTTCAGGCTA ACGATTCAACAGGATTCTACAGTTGGTTCTCGGACTATTCGCAGAAATGTGTCGATGAAGACCTTTGCCAAGACC GTGGGTTCCAAATCGAGGAGAGCTATGATACATGGATCTACAATTTGGTCACCAAGGCAATTTCCGAGATGGTGA GCCCGACGGGTGAAACCCCAACTTATGCTAAGGACAACAAGAATGGATTTTTATCCTCTTTACTTGCTTGGATCC GAGGCTCGAAGGTGGTGATTGGTGGTCGCGACCTCCCAGGCTTTTATGTCTGGGACGCTAATACTGACGCGGATT TGATGACTGGCCTGCCTGATTCCTGCAAAACCTCACTCACCCAATTAGTCGGATGTGATTCGTACGCGCGGCTGT TTTTGGCTGAGAGTTATCGGGGATCATTGGGTAATGACACTCTCACAGAATCAGTCTGTGATGAAAGTTGCGGCG TCTCATTGAAGCGCTGGTTTGATAATGTTGCTTCTGACTGCAAGGGATACAATGTTTCTGATTCCGCTGCCACCA AATATGGTGGACAGATCTGGTCTGGCTGGAACGAAACCTGTCTCAAAGATACCAGAACGGGAGAATACTGCAATG GTAAGGGTATCTCGTGCTCGTTTTCTAAGTCGCTAGTGCTAATGATGGCAGATTTGATATCCGAATATCCAGCCG TTGACTTCCTAGATGACATGCCGGAATCGGAAATCTGCTCATTCTGCTTTGTCGAGAGGCTGGGAATTATGCAGC GGTCGTCATACTCCTTCTATGATGAAGGGTTCCAGGATCAGTTGGGTACCGTCAATGCTAAATGTGGACTGTCTG TTCCGACAGCCAAGCCCCCATCGCTAGATGCACCCCCTGAGTTTCTACCTGACCCAATCTGCATCTCGAATCAAA CGTATCAGACAGTCTCCGGTGACACATGTGACTCTATCGCTTTGAGATACAATGTTTCATCTGCTTCCCTGGTCA TGGCGAACAATCGCCAGCTCATGGTCTGCAACGACTTGACTGCAGAGATGGATCTTTGCATACCAAGCAGCTGTG CATCCACATACACCCTCAAGAGCAACGACACCTGTACATCCATCGAATCGTCGGGCCTTCGCCAGCGTGGTGATG TGAGGAAATACAACTCATGGGTTGAATGGGACTGCTCCAATCTTCAAACATCAACTGACTTCTGGGGCCACATAA TTTGCCTCGGCGTTCAAGGAGGTACATACACTGCTACTGCCTCGATTCCGGGAGTTACTCTAGCCCCCGAAGAGA GCACAGGATATTCAAATTCACGCGTCGCGCCCCCGGCCAATGCTACTGCCGCTGAAGGTACAACCTTGAAGTGTG GCAAGTGGCGCGTTGCTGTGAAGGGAGAGACTTGTGCACAGATCTGCCTGCAAGAATCAATCACCTCAAGTCTAT TTGTCGGAGTGAACCCGTCTCTCGCAAGTTCGAATTGTTCCGACGGTTTAATCGTTGGAAATGCATACTGTGTCG GCCCTAATCCGGGATGGTCGTTCTCTAATTCGACTACTTCCTTAAGCACCCAAGGAAGGACTCCAGGGAGCAGCT CAATGCCAGTTTCCGCAGCTATTCTTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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