© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9038.t1 |
| Gene name | |
| Location | scaffold_40:137650..138798 |
| Strand | + |
| Gene length (bp) | 1148 |
| Transcript length (bp) | 1083 |
| Coding sequence length (bp) | 1083 |
| Protein length (aa) | 361 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06999 | Suc_Fer-like | Sucrase/ferredoxin-like | 4.2E-60 | 77 | 349 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 22.80 | 10.94 | 34.65 |
| 5d_25C | Five days - 25 degrees Celsius | 17.86 | 7.95 | 27.77 |
| 7d_25C | Seven days - 25 degrees Celsius | 13.34 | 5.43 | 21.25 |
| 10d_25C | Ten days - 25 degrees Celsius | 8.66 | 3.03 | 14.30 |
| 7d_15C | Seven days - 15 degrees Celsius | 30.72 | 15.78 | 45.66 |
| 7d_30C | Seven days - 30 degrees Celsius | 8.55 | 2.79 | 14.32 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.490697 | no |
| 3d_25C | 7d_25C | 0.076091 | no |
| 3d_25C | 7d_15C | 0.333990 | no |
| 3d_25C | 7d_30C | 0.003197 | yes |
| 3d_25C | 10d_25C | 0.001278 | yes |
| 5d_25C | 7d_25C | 0.419225 | no |
| 5d_25C | 7d_15C | 0.060029 | no |
| 5d_25C | 7d_30C | 0.032406 | yes |
| 5d_25C | 10d_25C | 0.025371 | yes |
| 7d_25C | 7d_15C | 0.001804 | yes |
| 7d_25C | 7d_30C | 0.235776 | no |
| 7d_25C | 10d_25C | 0.231120 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.984214 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9038.t1 MRPILVQSLKRDWSGRTYRNCQTIRLLSTPQRSSRLRARLEIPPPFPITKTCPEPSCNCPPTPALPEDLPIDYEQ ALNGTMAAYAQQLLVCTGQPDWTSRIENDGENKGWGNLVRGLKSLLGRGGPYLDPFNNILVTNSSITPAAGSSST SASVFLFPSFKYIPSIPVNTTSSPDQTTDLTTFVRAYLLPERLHNMHSSLSATKQAQMTRSPELASHFPGVIDIN HSPTVLICGHGGRDMRCGLMAPALESEFKRVLQARGFTSADSDGTTVDGPKHANIGLISHVGGHKYAGNVIIYIP PKMIVGTSSEPHPLAGKGIWYGRIEPKHVEGLVEETILGGKVIADHFRGGIDRSGDILRM* |
| Coding | >Pro_DTO377G3_2|g9038.t1 ATGCGACCAATACTTGTGCAATCGCTCAAGCGCGACTGGAGCGGGCGAACCTATCGAAACTGCCAGACAATCCGT CTACTGTCTACCCCTCAGCGCAGTAGCAGACTCCGCGCCCGCCTAGAAATCCCCCCTCCCTTCCCCATTACCAAG ACATGCCCCGAACCAAGCTGCAATTGTCCGCCCACGCCCGCTCTACCGGAGGATCTACCGATTGATTATGAACAA GCCTTAAATGGGACGATGGCTGCCTACGCGCAGCAGCTTCTCGTCTGCACGGGACAGCCAGACTGGACGAGTCGC ATTGAGAATGATGGGGAAAACAAAGGCTGGGGTAACCTTGTGAGAGGATTGAAGAGCCTGCTAGGTCGTGGCGGG CCATATCTTGATCCTTTCAACAATATCTTGGTCACAAATTCATCTATCACACCAGCTGCAGGATCCTCCTCCACC TCTGCCTCGGTGTTCCTCTTCCCCAGCTTCAAATACATTCCCTCAATACCCGTGAACACAACCTCATCGCCCGAC CAAACAACCGACCTTACGACCTTCGTGCGCGCATATCTTCTCCCTGAACGACTCCACAACATGCACTCCTCTCTC TCCGCAACCAAACAAGCACAAATGACCCGATCCCCGGAGCTAGCATCACACTTCCCAGGCGTTATCGATATCAAT CACTCTCCAACAGTGTTAATATGTGGACACGGAGGTCGCGACATGCGCTGTGGTCTCATGGCCCCCGCGTTGGAA AGCGAGTTCAAGCGCGTGTTGCAAGCGCGAGGATTCACTTCCGCAGACAGTGATGGGACTACGGTGGATGGCCCT AAGCACGCTAATATTGGTCTGATCAGTCATGTTGGAGGACACAAATACGCAGGCAATGTGATTATTTATATACCA CCGAAGATGATAGTGGGAACTTCTTCGGAGCCACACCCGCTGGCGGGTAAGGGGATTTGGTACGGTCGTATTGAG CCCAAGCATGTGGAGGGGCTTGTCGAGGAGACTATTCTCGGAGGGAAAGTGATTGCGGATCATTTCCGGGGTGGC ATTGATAGGAGTGGTGATATTTTGAGAATGTAG |
| Transcript | >Pro_DTO377G3_2|g9038.t1 ATGCGACCAATACTTGTGCAATCGCTCAAGCGCGACTGGAGCGGGCGAACCTATCGAAACTGCCAGACAATCCGT CTACTGTCTACCCCTCAGCGCAGTAGCAGACTCCGCGCCCGCCTAGAAATCCCCCCTCCCTTCCCCATTACCAAG ACATGCCCCGAACCAAGCTGCAATTGTCCGCCCACGCCCGCTCTACCGGAGGATCTACCGATTGATTATGAACAA GCCTTAAATGGGACGATGGCTGCCTACGCGCAGCAGCTTCTCGTCTGCACGGGACAGCCAGACTGGACGAGTCGC ATTGAGAATGATGGGGAAAACAAAGGCTGGGGTAACCTTGTGAGAGGATTGAAGAGCCTGCTAGGTCGTGGCGGG CCATATCTTGATCCTTTCAACAATATCTTGGTCACAAATTCATCTATCACACCAGCTGCAGGATCCTCCTCCACC TCTGCCTCGGTGTTCCTCTTCCCCAGCTTCAAATACATTCCCTCAATACCCGTGAACACAACCTCATCGCCCGAC CAAACAACCGACCTTACGACCTTCGTGCGCGCATATCTTCTCCCTGAACGACTCCACAACATGCACTCCTCTCTC TCCGCAACCAAACAAGCACAAATGACCCGATCCCCGGAGCTAGCATCACACTTCCCAGGCGTTATCGATATCAAT CACTCTCCAACAGTGTTAATATGTGGACACGGAGGTCGCGACATGCGCTGTGGTCTCATGGCCCCCGCGTTGGAA AGCGAGTTCAAGCGCGTGTTGCAAGCGCGAGGATTCACTTCCGCAGACAGTGATGGGACTACGGTGGATGGCCCT AAGCACGCTAATATTGGTCTGATCAGTCATGTTGGAGGACACAAATACGCAGGCAATGTGATTATTTATATACCA CCGAAGATGATAGTGGGAACTTCTTCGGAGCCACACCCGCTGGCGGGTAAGGGGATTTGGTACGGTCGTATTGAG CCCAAGCATGTGGAGGGGCTTGTCGAGGAGACTATTCTCGGAGGGAAAGTGATTGCGGATCATTTCCGGGGTGGC ATTGATAGGAGTGGTGATATTTTGAGAATGTAG |
| Gene | >Pro_DTO377G3_2|g9038.t1 ATGCGACCAATACTTGTGCAATCGCTCAAGCGCGACTGGAGCGGGCGAACCTATCGAAACTGCCAGACAATCCGT CTACTGTCTACCCCTCAGCGCAGTAGCAGACTCCGCGCCCGCCTAGAAATCCCCCCTCCCTTCCCCATTACCAAG ACATGCCCCGAACCAAGCTGCAATTGTCCGCCCACGCCCGCTCTACCGGAGGATCTACCGATTGATTATGAACAA GCCTTAAATGGGACGATGGCTGCCTACGCGCAGCAGCTTCTCGTCTGCACGGGACAGCCAGACTGGACGAGTCGC ATTGAGAATGATGGGGAAAACAAAGGCTGGGGTAACCTTGTGAGAGGATTGAAGAGCCTGCTAGGTCGTGGCGGG CCATATCTTGATGTAAGTGGTTCAACTAACCCAATGAATGCGCAAGCTCTTGCTTATACAGGATCATATCGCTTT AGCCTTTCAACAATATCTTGGTCACAAATTCATCTATCACACCAGCTGCAGGATCCTCCTCCACCTCTGCCTCGG TGTTCCTCTTCCCCAGCTTCAAATACATTCCCTCAATACCCGTGAACACAACCTCATCGCCCGACCAAACAACCG ACCTTACGACCTTCGTGCGCGCATATCTTCTCCCTGAACGACTCCACAACATGCACTCCTCTCTCTCCGCAACCA AACAAGCACAAATGACCCGATCCCCGGAGCTAGCATCACACTTCCCAGGCGTTATCGATATCAATCACTCTCCAA CAGTGTTAATATGTGGACACGGAGGTCGCGACATGCGCTGTGGTCTCATGGCCCCCGCGTTGGAAAGCGAGTTCA AGCGCGTGTTGCAAGCGCGAGGATTCACTTCCGCAGACAGTGATGGGACTACGGTGGATGGCCCTAAGCACGCTA ATATTGGTCTGATCAGTCATGTTGGAGGACACAAATACGCAGGCAATGTGATTATTTATATACCACCGAAGATGA TAGTGGGAACTTCTTCGGAGCCACACCCGCTGGCGGGTAAGGGGATTTGGTACGGTCGTATTGAGCCCAAGCATG TGGAGGGGCTTGTCGAGGAGACTATTCTCGGAGGGAAAGTGATTGCGGATCATTTCCGGGGTGGCATTGATAGGA GTGGTGATATTTTGAGAATGTAG |