© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9033.t1 |
| Gene name | |
| Location | scaffold_40:118396..120168 |
| Strand | - |
| Gene length (bp) | 1772 |
| Transcript length (bp) | 1659 |
| Coding sequence length (bp) | 1659 |
| Protein length (aa) | 553 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10396 | TrmE_N | GTP-binding protein TrmE N-terminus | 2.3E-38 | 7 | 133 |
| PF12631 | MnmE_helical | MnmE helical domain | 2.1E-29 | 136 | 549 |
| PF01926 | MMR_HSR1 | 50S ribosome-binding GTPase | 4.4E-17 | 235 | 334 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005525 | GTP binding | Yes |
| GO:0019001 | guanyl nucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0003674 | molecular_function | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0032561 | guanyl ribonucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0017076 | purine nucleotide binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 32 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 15.44 | 7.63 | 23.25 |
| 5d_25C | Five days - 25 degrees Celsius | 15.41 | 7.65 | 23.16 |
| 7d_25C | Seven days - 25 degrees Celsius | 16.93 | 8.47 | 25.39 |
| 10d_25C | Ten days - 25 degrees Celsius | 17.16 | 8.75 | 25.57 |
| 7d_15C | Seven days - 15 degrees Celsius | 18.94 | 9.90 | 27.97 |
| 7d_30C | Seven days - 30 degrees Celsius | 13.81 | 6.67 | 20.96 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.995697 | no |
| 3d_25C | 7d_25C | 0.814448 | no |
| 3d_25C | 7d_15C | 0.522655 | no |
| 3d_25C | 7d_30C | 0.772196 | no |
| 3d_25C | 10d_25C | 0.778861 | no |
| 5d_25C | 7d_25C | 0.813171 | no |
| 5d_25C | 7d_15C | 0.519726 | no |
| 5d_25C | 7d_30C | 0.780223 | no |
| 5d_25C | 10d_25C | 0.776801 | no |
| 7d_25C | 7d_15C | 0.759941 | no |
| 7d_25C | 7d_30C | 0.558749 | no |
| 7d_25C | 10d_25C | 0.976653 | no |
| 7d_15C | 7d_30C | 0.282208 | no |
| 7d_15C | 10d_25C | 0.787139 | no |
| 7d_30C | 10d_25C | 0.513242 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9033.t1 MLDGDSTIYALSTATGRAAIAVVRVSGPACASIYKSLCPNHPLPKPRYAALRTLYDPTQPPTANTILDAGALVLY FPSPRTATGEDILELHIHGGPAITKAVLSAIAQTNTPEQTVRYAEPGEFTRRAFMNDRLSLPQIEALGDTLSADT EQQRRLAVRGSSDALLNRYERWRQGLLYARGELEALIDFSEDQHFDESTEELVSSVAAQVRTLSVQIGFHIANAS RGELLRNGIRVALLGAPNAGKSSLLNRVVGKEAAIVSTEQGTTRDIVDIGVDLGGWYCKLGDMAGIRAEGSSGDG EGVVIGAVEKEGIRRARERALESDVVIVVLSLEDTATGVQLFVEPEVLGAVNDCVEAGKCLVVAVNKCDKLHTAM ESGVPQSLSDTIHDIFPSVPVDRVFTISCEEARQGASSLNTTTDPGNLQVFLRGLIATFEQIASPLGVGGDGGQY DISYWEDSLGVSHRQSSNLQICLDHLDDFLSQASSAECHDSSSRERELGPLDSHVESEVDIVTAAEHLRFAADML AKITGKGESGDVEDVLGVVFEKFCVGK* |
| Coding | >Pro_DTO377G3_2|g9033.t1 ATGCTAGATGGAGACTCTACAATATATGCGCTCTCTACTGCAACTGGACGAGCAGCCATTGCAGTCGTGCGTGTA TCGGGTCCGGCATGTGCCTCGATATACAAGAGTCTCTGCCCAAACCACCCGCTTCCAAAACCGCGCTATGCAGCC CTCCGCACCCTCTATGACCCAACCCAACCCCCAACCGCAAACACAATCCTCGATGCCGGCGCCTTAGTCCTCTAC TTCCCCTCCCCACGAACCGCAACAGGCGAAGACATCCTCGAACTACACATCCACGGCGGCCCCGCAATAACAAAA GCCGTCCTTTCAGCAATCGCACAGACAAACACCCCAGAGCAAACAGTGCGCTACGCCGAACCAGGCGAATTCACC CGCCGCGCCTTCATGAACGACCGTCTCAGCCTGCCTCAGATTGAAGCACTCGGCGACACTTTGTCCGCCGATACC GAGCAGCAGCGACGACTAGCTGTGCGTGGCTCCAGCGACGCATTGCTGAATCGATACGAGCGGTGGCGGCAGGGT CTGCTGTATGCGCGCGGCGAGCTGGAGGCGCTGATTGATTTCTCTGAGGATCAGCATTTCGATGAGTCCACCGAG GAGCTTGTTTCTTCTGTTGCGGCCCAAGTGCGCACGTTGAGCGTGCAGATCGGTTTCCATATTGCTAATGCGTCG CGGGGCGAGTTGCTTAGGAATGGGATTCGGGTTGCGCTATTGGGTGCGCCGAATGCTGGCAAGAGTTCCTTGCTT AACCGGGTTGTTGGGAAGGAGGCTGCTATTGTTAGTACTGAGCAAGGGACTACGAGGGATATTGTCGATATTGGG GTTGATCTTGGAGGATGGTATTGTAAGCTTGGGGATATGGCGGGGATCCGGGCTGAGGGTAGCTCTGGTGATGGT GAGGGGGTTGTTATTGGAGCCGTTGAGAAAGAGGGCATTCGCCGGGCTAGGGAGAGGGCGTTGGAGTCTGATGTT GTTATTGTGGTTCTTTCGCTGGAAGACACTGCCACTGGCGTCCAGCTATTCGTTGAGCCGGAGGTTCTGGGTGCT GTTAATGACTGCGTGGAAGCAGGCAAGTGCCTCGTTGTGGCTGTCAACAAATGCGACAAGCTACACACTGCCATG GAAAGTGGTGTGCCGCAGTCATTGTCAGATACGATCCACGACATCTTCCCTTCGGTCCCGGTAGACCGTGTATTT ACCATTTCCTGCGAGGAAGCCCGTCAGGGAGCATCGTCTCTCAATACCACTACAGACCCGGGTAATCTACAGGTC TTTCTACGTGGACTAATTGCGACGTTTGAGCAGATTGCCTCGCCTCTTGGCGTGGGCGGAGATGGAGGTCAATAT GATATCTCGTATTGGGAAGATTCTCTAGGTGTCTCGCATCGCCAAAGCTCTAATCTTCAAATATGTCTCGATCAT CTGGACGACTTCCTATCTCAAGCATCTTCTGCTGAATGTCATGATAGTTCCTCGCGCGAGAGAGAACTCGGTCCT CTTGATTCCCATGTTGAATCTGAAGTCGATATCGTCACTGCTGCGGAACATCTGCGCTTTGCGGCTGATATGCTG GCTAAGATCACAGGAAAAGGCGAGAGTGGAGATGTCGAGGATGTGTTGGGGGTTGTCTTTGAGAAATTCTGTGTC GGCAAATGA |
| Transcript | >Pro_DTO377G3_2|g9033.t1 ATGCTAGATGGAGACTCTACAATATATGCGCTCTCTACTGCAACTGGACGAGCAGCCATTGCAGTCGTGCGTGTA TCGGGTCCGGCATGTGCCTCGATATACAAGAGTCTCTGCCCAAACCACCCGCTTCCAAAACCGCGCTATGCAGCC CTCCGCACCCTCTATGACCCAACCCAACCCCCAACCGCAAACACAATCCTCGATGCCGGCGCCTTAGTCCTCTAC TTCCCCTCCCCACGAACCGCAACAGGCGAAGACATCCTCGAACTACACATCCACGGCGGCCCCGCAATAACAAAA GCCGTCCTTTCAGCAATCGCACAGACAAACACCCCAGAGCAAACAGTGCGCTACGCCGAACCAGGCGAATTCACC CGCCGCGCCTTCATGAACGACCGTCTCAGCCTGCCTCAGATTGAAGCACTCGGCGACACTTTGTCCGCCGATACC GAGCAGCAGCGACGACTAGCTGTGCGTGGCTCCAGCGACGCATTGCTGAATCGATACGAGCGGTGGCGGCAGGGT CTGCTGTATGCGCGCGGCGAGCTGGAGGCGCTGATTGATTTCTCTGAGGATCAGCATTTCGATGAGTCCACCGAG GAGCTTGTTTCTTCTGTTGCGGCCCAAGTGCGCACGTTGAGCGTGCAGATCGGTTTCCATATTGCTAATGCGTCG CGGGGCGAGTTGCTTAGGAATGGGATTCGGGTTGCGCTATTGGGTGCGCCGAATGCTGGCAAGAGTTCCTTGCTT AACCGGGTTGTTGGGAAGGAGGCTGCTATTGTTAGTACTGAGCAAGGGACTACGAGGGATATTGTCGATATTGGG GTTGATCTTGGAGGATGGTATTGTAAGCTTGGGGATATGGCGGGGATCCGGGCTGAGGGTAGCTCTGGTGATGGT GAGGGGGTTGTTATTGGAGCCGTTGAGAAAGAGGGCATTCGCCGGGCTAGGGAGAGGGCGTTGGAGTCTGATGTT GTTATTGTGGTTCTTTCGCTGGAAGACACTGCCACTGGCGTCCAGCTATTCGTTGAGCCGGAGGTTCTGGGTGCT GTTAATGACTGCGTGGAAGCAGGCAAGTGCCTCGTTGTGGCTGTCAACAAATGCGACAAGCTACACACTGCCATG GAAAGTGGTGTGCCGCAGTCATTGTCAGATACGATCCACGACATCTTCCCTTCGGTCCCGGTAGACCGTGTATTT ACCATTTCCTGCGAGGAAGCCCGTCAGGGAGCATCGTCTCTCAATACCACTACAGACCCGGGTAATCTACAGGTC TTTCTACGTGGACTAATTGCGACGTTTGAGCAGATTGCCTCGCCTCTTGGCGTGGGCGGAGATGGAGGTCAATAT GATATCTCGTATTGGGAAGATTCTCTAGGTGTCTCGCATCGCCAAAGCTCTAATCTTCAAATATGTCTCGATCAT CTGGACGACTTCCTATCTCAAGCATCTTCTGCTGAATGTCATGATAGTTCCTCGCGCGAGAGAGAACTCGGTCCT CTTGATTCCCATGTTGAATCTGAAGTCGATATCGTCACTGCTGCGGAACATCTGCGCTTTGCGGCTGATATGCTG GCTAAGATCACAGGAAAAGGCGAGAGTGGAGATGTCGAGGATGTGTTGGGGGTTGTCTTTGAGAAATTCTGTGTC GGCAAATGA |
| Gene | >Pro_DTO377G3_2|g9033.t1 ATGCTAGATGGAGACTCTACAATATATGCGCTCTCTACTGCAACTGGACGAGCAGCCATTGCAGTCGTGCGTGTA TCGGGTCCGGCATGTGCCTCGGTATGTATTCCTCGAAGAACTACTAAAGCACCAGACTAACAATGCCATTCAGAT ATACAAGAGTCTCTGCCCAAACCACCCGCTTCCAAAACCGCGCTATGCAGCCCTCCGCACCCTCTATGACCCAAC CCAACCCCCAACCGCAAACACAATCCTCGATGCCGGCGCCTTAGTCCTCTACTTCCCCTCCCCACGAACCGCAAC AGGCGAAGACATCCTCGAACTACACATCCACGGCGGCCCCGCAATAACAAAAGCCGTCCTTTCAGCAATCGCACA GACAAACACCCCAGAGCAAACAGTGCGCTACGCCGAACCAGGCGAATTCACCCGCCGCGCCTTCATGAACGACCG TCTCAGCCTGCCTCAGATTGAAGCACTCGGCGACACTTTGTCCGCCGATACCGAGCAGCAGCGACGACTAGCTGT GCGTGGCTCCAGCGACGCATTGCTGAATCGATACGAGCGGTGGCGGCAGGGTCTGCTGTATGCGCGCGGCGAGCT GGAGGCGCTGATTGATTTCTCTGAGGATCAGCATTTCGATGAGTCCACCGAGGAGCTTGTTTCTTCTGTTGCGGC CCAAGTGCGCACGTTGAGCGTGCAGATCGGTTTCCATATTGCTAATGCGTCGCGGGGCGAGTTGCTTAGGAATGG GATTCGGGTTGCGCTATTGGGTGCGCCGAATGCTGGCAAGAGTTCCTTGCTTAACCGGGTTGTTGGGAAGGAGGC TGCTATTGTTAGTACTGAGCAAGGGACTACGAGGGATATTGTCGATATTGGGGTTGATCTTGGAGGATGGTATTG TAAGCTTGGGGATATGGCGGGGATCCGGGCTGAGGGTAGCTCTGGTGATGGTGAGGGGGTTGTTATTGGAGCCGT TGAGAAAGAGGGCATTCGCCGGGCTAGGGAGAGGGCGTTGGAGTCTGATGTTGTTATTGTGGTTCTTTCGCTGGA AGACACTGCCACTGGCGTCCAGCTATTCGTTGAGCCGGAGGTTCTGGGTGCTGTTAATGACTGCGTGGAAGCAGG CAAGTGCCTCGTTGTGGCTGTCAACAAATGCGACAAGCTACACACTGCCATGGAAAGTGGTGTGCCGCAGTCATT GTCAGATACGATCCACGACATCTTCCCTTCGGTCCCGGTAGACCGTGTATTTACCATTTCCTGCGAGGAAGCCCG TCAGGGAGCATCGTCTCTCAATACCACTACAGACCCGGGTAATCTACAGGTCTTTCTACGTGGACTAATTGCGAC GTTTGAGCAGATTGCCTCGCCTCTTGGCGTGGGCGGAGATGGAGGTCAATATGATATCTCGTATTGGGAAGATTC TCTAGGTGTCTCGCATCGCCAAAGCTCTAATCTTCAAATATGTCTCGATCATCTGGACGACTTCCTATCTCAAGC ATCTTCTGCTGAATGTCATGATAGTTCCTCGCGCGAGAGAGAACTCGGTCCTCTTGATTCCCATGTTGAATCTGA AGTCGATATCGTCACTGCTGCGGAACATCTGCGCTTTGCGGCTGATATGCTGGCTAAGATCACAGGAAAAGGCGA GAGTGGAGATGTCGAGGATGTGTTGGGGGTTGTCTTTGAGAAGTAAGTACTGGAGGGTCTTTGTCTTGGTTTGCT GGTCTGGATGGCGAGCTGACTGTCGTAGATTCTGTGTCGGCAAATGA |