© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9029.t1 |
| Gene name | |
| Location | scaffold_40:110181..111327 |
| Strand | + |
| Gene length (bp) | 1146 |
| Transcript length (bp) | 1146 |
| Coding sequence length (bp) | 1146 |
| Protein length (aa) | 382 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 23.98 | 11.90 | 36.06 |
| 5d_25C | Five days - 25 degrees Celsius | 19.50 | 9.07 | 29.94 |
| 7d_25C | Seven days - 25 degrees Celsius | 19.00 | 8.85 | 29.15 |
| 10d_25C | Ten days - 25 degrees Celsius | 13.95 | 5.90 | 21.99 |
| 7d_15C | Seven days - 15 degrees Celsius | 24.31 | 12.05 | 36.58 |
| 7d_30C | Seven days - 30 degrees Celsius | 16.26 | 7.25 | 25.27 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.556237 | no |
| 3d_25C | 7d_25C | 0.497305 | no |
| 3d_25C | 7d_15C | 0.976609 | no |
| 3d_25C | 7d_30C | 0.207293 | no |
| 3d_25C | 10d_25C | 0.076091 | no |
| 5d_25C | 7d_25C | 0.957758 | no |
| 5d_25C | 7d_15C | 0.516625 | no |
| 5d_25C | 7d_30C | 0.640069 | no |
| 5d_25C | 10d_25C | 0.339234 | no |
| 7d_25C | 7d_15C | 0.459870 | no |
| 7d_25C | 7d_30C | 0.694672 | no |
| 7d_25C | 10d_25C | 0.382775 | no |
| 7d_15C | 7d_30C | 0.192251 | no |
| 7d_15C | 10d_25C | 0.067447 | no |
| 7d_30C | 10d_25C | 0.719322 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9029.t1 MNNLSSLCCRSSQGLRAVARPVRYASTSATPTSPKSPRSNSRRWLSIAFVGATAAGAGAYIQSQNTSSATLNPET FTKYSIVSREPVSATSSLFTLRPRIPSDSNYDVYEEAWQTGVWSVMFKQPQLQIGRDYTPLPTTAATSLSVDDEN EGCLRFFIRKDPFGEVSRYLHNIAVGADVEIRGPKIECAIPKETSDIVFIAGGTGIAPALQAAYSLLNRKNTEHR PTIHILWANRIKDDCAGGHSDSLKPQSRRGWFSGWFGSKSRDNTSEKPVDVVRTEETSIIVRELEALKAQYPGQV IVDYYLDEENTFIGKEDIRGAIAPASKGNSRRSNLILVSGPEGFISYMAGPKLWAQGQELQGPLKGIIKELDLKE WAVWKL* |
| Coding | >Pro_DTO377G3_2|g9029.t1 ATGAACAACCTATCTTCTTTATGCTGTAGAAGCAGCCAGGGTCTCAGAGCTGTAGCTCGGCCTGTACGCTATGCT TCAACCTCAGCAACCCCGACGTCACCGAAGTCCCCCCGTTCCAACTCGCGCCGCTGGCTAAGCATCGCCTTCGTA GGCGCAACAGCAGCAGGTGCAGGCGCCTATATCCAATCCCAAAATACATCATCCGCCACCTTGAACCCCGAAACA TTCACCAAATACAGCATTGTATCCCGCGAGCCCGTGTCGGCAACCAGCAGCCTTTTCACGCTGCGGCCACGCATA CCCAGCGACAGCAACTACGATGTCTACGAGGAAGCATGGCAGACGGGAGTCTGGAGTGTGATGTTCAAGCAACCA CAATTACAAATCGGACGGGATTACACGCCGCTGCCCACGACGGCAGCGACATCGCTAAGTGTCGACGACGAGAAC GAGGGCTGCCTGCGCTTCTTCATTCGAAAGGATCCCTTCGGAGAGGTCTCGCGCTACCTGCATAATATTGCTGTT GGTGCTGACGTCGAGATTCGTGGACCCAAGATCGAATGCGCGATCCCGAAGGAAACGAGTGATATTGTCTTTATT GCTGGTGGGACGGGGATTGCGCCAGCTCTGCAGGCTGCGTATTCTCTTTTGAATCGCAAAAATACTGAACATCGA CCGACGATCCATATCTTGTGGGCGAATCGGATAAAGGATGACTGTGCTGGTGGTCATAGTGACTCGCTGAAGCCG CAGTCACGCCGGGGCTGGTTCTCTGGGTGGTTTGGCTCGAAGAGTCGGGATAATACTTCGGAAAAGCCTGTGGAT GTTGTACGAACAGAAGAAACTTCTATTATTGTGCGAGAGCTAGAGGCACTCAAGGCCCAGTATCCCGGGCAGGTT ATTGTGGATTATTATCTGGACGAGGAGAACACGTTCATTGGGAAGGAAGATATCCGAGGTGCTATTGCACCAGCG TCAAAAGGCAACTCTCGCAGGAGCAATTTGATTTTGGTTTCTGGTCCTGAGGGGTTCATCAGCTACATGGCTGGG CCTAAGCTGTGGGCGCAAGGTCAGGAGCTCCAGGGCCCCCTAAAAGGAATCATCAAGGAGCTTGATCTCAAAGAA TGGGCTGTGTGGAAGCTCTGA |
| Transcript | >Pro_DTO377G3_2|g9029.t1 ATGAACAACCTATCTTCTTTATGCTGTAGAAGCAGCCAGGGTCTCAGAGCTGTAGCTCGGCCTGTACGCTATGCT TCAACCTCAGCAACCCCGACGTCACCGAAGTCCCCCCGTTCCAACTCGCGCCGCTGGCTAAGCATCGCCTTCGTA GGCGCAACAGCAGCAGGTGCAGGCGCCTATATCCAATCCCAAAATACATCATCCGCCACCTTGAACCCCGAAACA TTCACCAAATACAGCATTGTATCCCGCGAGCCCGTGTCGGCAACCAGCAGCCTTTTCACGCTGCGGCCACGCATA CCCAGCGACAGCAACTACGATGTCTACGAGGAAGCATGGCAGACGGGAGTCTGGAGTGTGATGTTCAAGCAACCA CAATTACAAATCGGACGGGATTACACGCCGCTGCCCACGACGGCAGCGACATCGCTAAGTGTCGACGACGAGAAC GAGGGCTGCCTGCGCTTCTTCATTCGAAAGGATCCCTTCGGAGAGGTCTCGCGCTACCTGCATAATATTGCTGTT GGTGCTGACGTCGAGATTCGTGGACCCAAGATCGAATGCGCGATCCCGAAGGAAACGAGTGATATTGTCTTTATT GCTGGTGGGACGGGGATTGCGCCAGCTCTGCAGGCTGCGTATTCTCTTTTGAATCGCAAAAATACTGAACATCGA CCGACGATCCATATCTTGTGGGCGAATCGGATAAAGGATGACTGTGCTGGTGGTCATAGTGACTCGCTGAAGCCG CAGTCACGCCGGGGCTGGTTCTCTGGGTGGTTTGGCTCGAAGAGTCGGGATAATACTTCGGAAAAGCCTGTGGAT GTTGTACGAACAGAAGAAACTTCTATTATTGTGCGAGAGCTAGAGGCACTCAAGGCCCAGTATCCCGGGCAGGTT ATTGTGGATTATTATCTGGACGAGGAGAACACGTTCATTGGGAAGGAAGATATCCGAGGTGCTATTGCACCAGCG TCAAAAGGCAACTCTCGCAGGAGCAATTTGATTTTGGTTTCTGGTCCTGAGGGGTTCATCAGCTACATGGCTGGG CCTAAGCTGTGGGCGCAAGGTCAGGAGCTCCAGGGCCCCCTAAAAGGAATCATCAAGGAGCTTGATCTCAAAGAA TGGGCTGTGTGGAAGCTCTGA |
| Gene | >Pro_DTO377G3_2|g9029.t1 ATGAACAACCTATCTTCTTTATGCTGTAGAAGCAGCCAGGGTCTCAGAGCTGTAGCTCGGCCTGTACGCTATGCT TCAACCTCAGCAACCCCGACGTCACCGAAGTCCCCCCGTTCCAACTCGCGCCGCTGGCTAAGCATCGCCTTCGTA GGCGCAACAGCAGCAGGTGCAGGCGCCTATATCCAATCCCAAAATACATCATCCGCCACCTTGAACCCCGAAACA TTCACCAAATACAGCATTGTATCCCGCGAGCCCGTGTCGGCAACCAGCAGCCTTTTCACGCTGCGGCCACGCATA CCCAGCGACAGCAACTACGATGTCTACGAGGAAGCATGGCAGACGGGAGTCTGGAGTGTGATGTTCAAGCAACCA CAATTACAAATCGGACGGGATTACACGCCGCTGCCCACGACGGCAGCGACATCGCTAAGTGTCGACGACGAGAAC GAGGGCTGCCTGCGCTTCTTCATTCGAAAGGATCCCTTCGGAGAGGTCTCGCGCTACCTGCATAATATTGCTGTT GGTGCTGACGTCGAGATTCGTGGACCCAAGATCGAATGCGCGATCCCGAAGGAAACGAGTGATATTGTCTTTATT GCTGGTGGGACGGGGATTGCGCCAGCTCTGCAGGCTGCGTATTCTCTTTTGAATCGCAAAAATACTGAACATCGA CCGACGATCCATATCTTGTGGGCGAATCGGATAAAGGATGACTGTGCTGGTGGTCATAGTGACTCGCTGAAGCCG CAGTCACGCCGGGGCTGGTTCTCTGGGTGGTTTGGCTCGAAGAGTCGGGATAATACTTCGGAAAAGCCTGTGGAT GTTGTACGAACAGAAGAAACTTCTATTATTGTGCGAGAGCTAGAGGCACTCAAGGCCCAGTATCCCGGGCAGGTT ATTGTGGATTATTATCTGGACGAGGAGAACACGTTCATTGGGAAGGAAGATATCCGAGGTGCTATTGCACCAGCG TCAAAAGGCAACTCTCGCAGGAGCAATTTGATTTTGGTTTCTGGTCCTGAGGGGTTCATCAGCTACATGGCTGGG CCTAAGCTGTGGGCGCAAGGTCAGGAGCTCCAGGGCCCCCTAAAAGGAATCATCAAGGAGCTTGATCTCAAAGAA TGGGCTGTGTGGAAGCTCTGA |