© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9028.t1 |
| Gene name | |
| Location | scaffold_40:108020..109898 |
| Strand | - |
| Gene length (bp) | 1878 |
| Transcript length (bp) | 1830 |
| Coding sequence length (bp) | 1830 |
| Protein length (aa) | 610 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 2.4E-58 | 125 | 583 |
| PF00324 | AA_permease | Amino acid permease | 5.0E-25 | 133 | 450 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 35 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 124 | 146 | 22 |
| 2 | 161 | 183 | 22 |
| 3 | 204 | 226 | 22 |
| 4 | 246 | 265 | 19 |
| 5 | 277 | 299 | 22 |
| 6 | 314 | 336 | 22 |
| 7 | 359 | 381 | 22 |
| 8 | 401 | 423 | 22 |
| 9 | 484 | 506 | 22 |
| 10 | 511 | 533 | 22 |
| 11 | 546 | 568 | 22 |
| 12 | 573 | 592 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 28.59 | 16.36 | 40.82 |
| 5d_25C | Five days - 25 degrees Celsius | 20.52 | 10.98 | 30.06 |
| 7d_25C | Seven days - 25 degrees Celsius | 18.66 | 9.71 | 27.60 |
| 10d_25C | Ten days - 25 degrees Celsius | 13.44 | 6.49 | 20.39 |
| 7d_15C | Seven days - 15 degrees Celsius | 22.65 | 12.35 | 32.95 |
| 7d_30C | Seven days - 30 degrees Celsius | 18.19 | 9.45 | 26.93 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.201457 | no |
| 3d_25C | 7d_25C | 0.082771 | no |
| 3d_25C | 7d_15C | 0.393811 | no |
| 3d_25C | 7d_30C | 0.062138 | no |
| 3d_25C | 10d_25C | 0.002297 | yes |
| 5d_25C | 7d_25C | 0.789483 | no |
| 5d_25C | 7d_15C | 0.768260 | no |
| 5d_25C | 7d_30C | 0.722219 | no |
| 5d_25C | 10d_25C | 0.127885 | no |
| 7d_25C | 7d_15C | 0.511300 | no |
| 7d_25C | 7d_30C | 0.952427 | no |
| 7d_25C | 10d_25C | 0.263367 | no |
| 7d_15C | 7d_30C | 0.451808 | no |
| 7d_15C | 10d_25C | 0.047513 | yes |
| 7d_30C | 10d_25C | 0.313253 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9028.t1 MSNTYQGNRNGSLAAPRDSLELASLASSSPGSVGGSSRSSSPDGVSSSRKLSLEDEDPLAESHQDAELGRRHRAQ SSFSISSAFDFGRNLFPLSQTQGGYAPLGTPSADRPGFTDGSLERNKTLTYLNGLSLIVGLIIGSGIFSSPSQVN ANAGSPGASLIVWAVAGLLAWTGAASYAELGGAIPLNGGSQIYLSKIFGELTGFLFAWCAVLVLKPGSAAIISLI FGEYVVRAFVGADVGDVNPWINKGVAFGGLVAVTLLNCISTKFATRIGDFFMFFKFVALLGVTVIGIIVAVTGFS AGGNANEEWKTTGWFEGTTTEISDFAVALYAGLWAFDGWDNTNYVTGEFKNPNRDLPRVIHTAMPLVIISYLLAN VSYFLVLPHSTIEASNTIAVQFGAKVFGAPGALILALVVSASCFGALNATTFTSGRLVYAAGKEGYLPSIFGRIG LHASSQGPPASSRLRRRSWASRALSRFFGDNSRLGFTPIYAMAFNGVLTTIYIVVGEFGTLVTFYGVAGYTFYFL TVLGLIVLRIREPLLERPYRTWITTPIIFCCVSLFLLSRAVISEPLQTLIVVAFIITGVPVYYWRIYKRDGRIDL PSWKFWKRR* |
| Coding | >Pro_DTO377G3_2|g9028.t1 ATGTCGAATACATATCAAGGGAACAGGAATGGTAGCCTCGCTGCGCCTCGAGACTCACTAGAACTCGCCTCCCTC GCATCCTCATCTCCCGGCTCCGTAGGCGGGTCCTCACGCTCCTCTTCCCCCGACGGTGTCTCTTCATCCCGCAAG CTCTCCCTTGAGGACGAAGATCCTCTCGCAGAATCGCATCAAGATGCCGAGCTAGGGCGCCGTCACAGAGCTCAG AGCTCGTTCTCCATATCCTCAGCTTTTGATTTCGGGCGCAATCTATTCCCGCTGTCGCAAACACAGGGTGGTTAC GCGCCCCTAGGTACTCCGTCCGCGGACAGACCAGGCTTCACAGACGGATCGCTGGAGCGGAATAAAACCTTGACA TACCTGAACGGTCTATCGCTCATCGTTGGGCTGATTATTGGATCTGGTATCTTCTCGTCACCGAGTCAGGTCAAT GCCAACGCGGGGTCGCCGGGCGCCTCGCTCATCGTTTGGGCTGTGGCTGGTCTGCTGGCCTGGACGGGCGCTGCT AGCTATGCAGAGCTGGGAGGAGCAATTCCACTGAACGGAGGCTCGCAGATCTATCTGTCCAAGATCTTTGGAGAG CTGACGGGTTTCCTTTTCGCATGGTGTGCCGTGTTAGTATTGAAACCTGGCTCTGCGGCGATTATCTCTCTCATC TTTGGCGAATACGTTGTCCGTGCGTTTGTGGGCGCTGATGTTGGCGACGTAAATCCTTGGATCAACAAGGGTGTT GCATTTGGAGGGCTTGTCGCAGTGACTCTGCTCAATTGCATCTCCACCAAGTTCGCTACCCGCATTGGTGATTTC TTTATGTTCTTCAAGTTCGTTGCTCTGCTAGGTGTCACAGTCATCGGGATTATAGTCGCTGTAACTGGCTTCTCG GCTGGAGGCAACGCAAATGAAGAATGGAAGACGACAGGATGGTTCGAGGGAACCACCACCGAGATATCTGATTTT GCAGTGGCCCTGTATGCAGGTCTTTGGGCATTTGACGGCTGGGACAATACCAACTACGTGACGGGCGAATTCAAG AACCCAAACCGCGATCTGCCCCGAGTCATCCACACGGCGATGCCACTGGTCATCATCTCCTATCTGCTCGCCAAT GTCTCCTATTTCCTTGTTCTTCCTCACTCCACCATTGAGGCGAGCAACACCATCGCCGTCCAATTCGGCGCAAAG GTATTCGGCGCCCCCGGAGCCTTGATTTTAGCTCTCGTCGTCTCAGCCAGCTGCTTCGGAGCTCTAAACGCAACC ACCTTCACAAGTGGCCGACTAGTCTACGCAGCCGGCAAGGAAGGGTATCTCCCCTCAATATTCGGCCGGATCGGT CTCCACGCCTCCTCGCAAGGCCCTCCAGCAAGCAGCCGACTACGCCGCCGCTCCTGGGCCAGCAGGGCCCTCTCC CGTTTCTTCGGCGATAACTCCAGACTCGGCTTCACGCCAATATATGCCATGGCTTTTAACGGCGTCCTAACAACT ATCTACATCGTCGTCGGCGAGTTCGGCACCCTCGTCACTTTCTATGGTGTAGCCGGATACACCTTCTACTTCCTC ACCGTTCTCGGCCTGATCGTCCTCCGTATCCGTGAACCCCTGTTGGAACGTCCCTACCGCACCTGGATCACCACA CCCATTATATTTTGCTGCGTGAGCCTTTTCCTCCTCAGCCGAGCTGTCATCTCCGAGCCCTTGCAAACGCTCATC GTCGTCGCGTTCATCATCACCGGCGTGCCCGTCTACTACTGGCGTATTTATAAGCGAGATGGTCGAATCGATCTT CCCAGCTGGAAATTCTGGAAGCGCCGATAA |
| Transcript | >Pro_DTO377G3_2|g9028.t1 ATGTCGAATACATATCAAGGGAACAGGAATGGTAGCCTCGCTGCGCCTCGAGACTCACTAGAACTCGCCTCCCTC GCATCCTCATCTCCCGGCTCCGTAGGCGGGTCCTCACGCTCCTCTTCCCCCGACGGTGTCTCTTCATCCCGCAAG CTCTCCCTTGAGGACGAAGATCCTCTCGCAGAATCGCATCAAGATGCCGAGCTAGGGCGCCGTCACAGAGCTCAG AGCTCGTTCTCCATATCCTCAGCTTTTGATTTCGGGCGCAATCTATTCCCGCTGTCGCAAACACAGGGTGGTTAC GCGCCCCTAGGTACTCCGTCCGCGGACAGACCAGGCTTCACAGACGGATCGCTGGAGCGGAATAAAACCTTGACA TACCTGAACGGTCTATCGCTCATCGTTGGGCTGATTATTGGATCTGGTATCTTCTCGTCACCGAGTCAGGTCAAT GCCAACGCGGGGTCGCCGGGCGCCTCGCTCATCGTTTGGGCTGTGGCTGGTCTGCTGGCCTGGACGGGCGCTGCT AGCTATGCAGAGCTGGGAGGAGCAATTCCACTGAACGGAGGCTCGCAGATCTATCTGTCCAAGATCTTTGGAGAG CTGACGGGTTTCCTTTTCGCATGGTGTGCCGTGTTAGTATTGAAACCTGGCTCTGCGGCGATTATCTCTCTCATC TTTGGCGAATACGTTGTCCGTGCGTTTGTGGGCGCTGATGTTGGCGACGTAAATCCTTGGATCAACAAGGGTGTT GCATTTGGAGGGCTTGTCGCAGTGACTCTGCTCAATTGCATCTCCACCAAGTTCGCTACCCGCATTGGTGATTTC TTTATGTTCTTCAAGTTCGTTGCTCTGCTAGGTGTCACAGTCATCGGGATTATAGTCGCTGTAACTGGCTTCTCG GCTGGAGGCAACGCAAATGAAGAATGGAAGACGACAGGATGGTTCGAGGGAACCACCACCGAGATATCTGATTTT GCAGTGGCCCTGTATGCAGGTCTTTGGGCATTTGACGGCTGGGACAATACCAACTACGTGACGGGCGAATTCAAG AACCCAAACCGCGATCTGCCCCGAGTCATCCACACGGCGATGCCACTGGTCATCATCTCCTATCTGCTCGCCAAT GTCTCCTATTTCCTTGTTCTTCCTCACTCCACCATTGAGGCGAGCAACACCATCGCCGTCCAATTCGGCGCAAAG GTATTCGGCGCCCCCGGAGCCTTGATTTTAGCTCTCGTCGTCTCAGCCAGCTGCTTCGGAGCTCTAAACGCAACC ACCTTCACAAGTGGCCGACTAGTCTACGCAGCCGGCAAGGAAGGGTATCTCCCCTCAATATTCGGCCGGATCGGT CTCCACGCCTCCTCGCAAGGCCCTCCAGCAAGCAGCCGACTACGCCGCCGCTCCTGGGCCAGCAGGGCCCTCTCC CGTTTCTTCGGCGATAACTCCAGACTCGGCTTCACGCCAATATATGCCATGGCTTTTAACGGCGTCCTAACAACT ATCTACATCGTCGTCGGCGAGTTCGGCACCCTCGTCACTTTCTATGGTGTAGCCGGATACACCTTCTACTTCCTC ACCGTTCTCGGCCTGATCGTCCTCCGTATCCGTGAACCCCTGTTGGAACGTCCCTACCGCACCTGGATCACCACA CCCATTATATTTTGCTGCGTGAGCCTTTTCCTCCTCAGCCGAGCTGTCATCTCCGAGCCCTTGCAAACGCTCATC GTCGTCGCGTTCATCATCACCGGCGTGCCCGTCTACTACTGGCGTATTTATAAGCGAGATGGTCGAATCGATCTT CCCAGCTGGAAATTCTGGAAGCGCCGATAA |
| Gene | >Pro_DTO377G3_2|g9028.t1 ATGTCGAATACATATCAAGGGAACAGGAATGGTAGCCTCGCTGCGCCTCGAGACTCACTAGAACTCGCCTCCCTC GCATCCTCATCTCCCGGCTCCGTAGGCGGGTCCTCACGCTCCTCTTCCCCCGACGGTGTCTCTTCATCCCGCAAG CTCTCCCTTGAGGACGAAGATCCTCTCGCAGAATCGCATCAAGATGCCGAGCTAGGGCGCCGTCACAGAGCTCAG AGCTCGTTCTCCATATCCTCAGCTTTTGATTTCGGGCGCAATCTATTCCCGCTGTCGCAAACACAGGGTGGTTAC GCGCCCCTAGGTACTCCGTCCGCGGACAGACCAGGCTTCACAGACGGATCGCTGGAGCGGAATAAAACCTTGACA TACCTGAACGGTCTATCGCTCATCGTTGGGCTGATTATTGGATCTGGTATCTTCTCGTCACCGAGTCAGGTCAAT GCCAACGCGGGGTCGCCGGGCGCCTCGCTCATCGTTTGGGCTGTGGCTGGTCTGCTGGCCTGGACGGGCGCTGCT AGCTATGCAGAGCTGGGAGGAGCAATTCCACTGAACGGAGGCTCGCAGATCTATCTGTCCAAGATCTTTGGAGAG CTGACGGGTTTCCTTTTCGCATGGTGTGCCGTGTTAGTATTGAAACCTGGCTCTGCGGCGATTATCTCTCTCATC TTTGGCGAATACGTTGTCCGTGCGTTTGTGGGCGCTGATGTTGGCGACGTAAATCCTTGGATCAACAAGGGTGTT GCATTTGGAGGGCTTGTCGCAGTGACTCTGCTCAATTGCATCTCCACCAAGTTCGCTACCCGCATTGGTGATTTC TTTATGTTCTTCAAGTTCGTTGCTCTGCTAGGTGTCACAGTCATCGGGATTATAGTCGCTGTAACTGGCTTCTCG GCTGGAGGCAACGCAAATGAAGAATGGAAGACGACAGGATGGTTCGAGGGAACCACCACCGAGATATCTGATTTT GCAGTGGCCCTGTATGCAGGTCTTTGGGCATTTGACGGCTGGGACAATGTAAGTTGACACTCAAGTATTTTGAAT GCTTCCACTCACATCTTACAGACCAACTACGTGACGGGCGAATTCAAGAACCCAAACCGCGATCTGCCCCGAGTC ATCCACACGGCGATGCCACTGGTCATCATCTCCTATCTGCTCGCCAATGTCTCCTATTTCCTTGTTCTTCCTCAC TCCACCATTGAGGCGAGCAACACCATCGCCGTCCAATTCGGCGCAAAGGTATTCGGCGCCCCCGGAGCCTTGATT TTAGCTCTCGTCGTCTCAGCCAGCTGCTTCGGAGCTCTAAACGCAACCACCTTCACAAGTGGCCGACTAGTCTAC GCAGCCGGCAAGGAAGGGTATCTCCCCTCAATATTCGGCCGGATCGGTCTCCACGCCTCCTCGCAAGGCCCTCCA GCAAGCAGCCGACTACGCCGCCGCTCCTGGGCCAGCAGGGCCCTCTCCCGTTTCTTCGGCGATAACTCCAGACTC GGCTTCACGCCAATATATGCCATGGCTTTTAACGGCGTCCTAACAACTATCTACATCGTCGTCGGCGAGTTCGGC ACCCTCGTCACTTTCTATGGTGTAGCCGGATACACCTTCTACTTCCTCACCGTTCTCGGCCTGATCGTCCTCCGT ATCCGTGAACCCCTGTTGGAACGTCCCTACCGCACCTGGATCACCACACCCATTATATTTTGCTGCGTGAGCCTT TTCCTCCTCAGCCGAGCTGTCATCTCCGAGCCCTTGCAAACGCTCATCGTCGTCGCGTTCATCATCACCGGCGTG CCCGTCTACTACTGGCGTATTTATAAGCGAGATGGTCGAATCGATCTTCCCAGCTGGAAATTCTGGAAGCGCCGA TAA |