© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9023.t1 |
| Gene name | |
| Location | scaffold_40:97462..98739 |
| Strand | + |
| Gene length (bp) | 1277 |
| Transcript length (bp) | 1056 |
| Coding sequence length (bp) | 1056 |
| Protein length (aa) | 352 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08542 | Rep_fac_C | Replication factor C C-terminal domain | 1.8E-18 | 249 | 335 |
| PF00004 | AAA | ATPase family associated with various cellular activities (AAA) | 1.0E-10 | 63 | 180 |
| PF13177 | DNA_pol3_delta2 | DNA polymerase III, delta subunit | 3.4E-07 | 104 | 183 |
| PF13173 | AAA_14 | AAA domain | 3.0E-06 | 62 | 166 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016887 | ATP hydrolysis activity | Yes |
| GO:0005524 | ATP binding | Yes |
| GO:0005488 | binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0043167 | ion binding | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| GO:0003674 | molecular_function | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0016787 | hydrolase activity | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 34.81 | 18.50 | 51.13 |
| 5d_25C | Five days - 25 degrees Celsius | 24.18 | 11.78 | 36.58 |
| 7d_25C | Seven days - 25 degrees Celsius | 25.61 | 12.37 | 38.85 |
| 10d_25C | Ten days - 25 degrees Celsius | 16.55 | 7.28 | 25.81 |
| 7d_15C | Seven days - 15 degrees Celsius | 20.87 | 9.32 | 32.42 |
| 7d_30C | Seven days - 30 degrees Celsius | 22.07 | 10.51 | 33.64 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.206506 | no |
| 3d_25C | 7d_25C | 0.318682 | no |
| 3d_25C | 7d_15C | 0.069111 | no |
| 3d_25C | 7d_30C | 0.096024 | no |
| 3d_25C | 10d_25C | 0.006742 | yes |
| 5d_25C | 7d_25C | 0.895169 | no |
| 5d_25C | 7d_15C | 0.707507 | no |
| 5d_25C | 7d_30C | 0.822625 | no |
| 5d_25C | 10d_25C | 0.230547 | no |
| 7d_25C | 7d_15C | 0.575028 | no |
| 7d_25C | 7d_30C | 0.690580 | no |
| 7d_25C | 10d_25C | 0.157617 | no |
| 7d_15C | 7d_30C | 0.901640 | no |
| 7d_15C | 10d_25C | 0.528858 | no |
| 7d_30C | 10d_25C | 0.391222 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9023.t1 MVQAESSSASRNAAKANTAGAPVDYELPWVEKYRPTFLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTT SVLCLARQMLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTAGAQQALRRTME IYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDAQVVKRLMQICEAENVQHSEDGIAALVFSAEGDMRQAIN NLQSTWSGFGFVSGDNVFRVVDSPHPIKVQAMIKACWEGKVDVALEGLNELWTLGYSSHDIISTMFRVTKTIPTL SEHSKLEFIREIGFTHMRILDGVQSLLQLSGCVAKLCKINMKPDLFEPPKA* |
| Coding | >Pro_DTO377G3_2|g9023.t1 ATGGTTCAAGCTGAATCTTCCTCTGCTTCTCGCAATGCTGCTAAGGCAAATACTGCCGGTGCCCCTGTGGACTAT GAGCTTCCCTGGGTCGAGAAATACCGCCCAACCTTCCTCGATGATATTGTCGGCAACACTGAAACAGTGGAACGG TTAAAGATCATTGCCAAAGATGGTAATATGCCACACGTTATCATCTCTGGCATGCCGGGTATTGGAAAGACCACT TCAGTATTATGTCTGGCGCGGCAAATGCTGGGAGATGCATACAAGGAGGCAGTTCTGGAGCTGAATGCAAGTGAT GAGAGAGGTATCGATGTGGTGCGAAATCGGATCAAAGGTTTTGCCCAAAAGAAGGTTACCCTGCCACAAGGACGC CATAAATTGGTCATCCTTGATGAAGCTGATAGCATGACCGCCGGTGCTCAACAAGCCCTACGACGAACTATGGAA ATCTATTCCTCCACCACACGATTTGCCTTTGCCTGTAACCAGTCGAACAAGATCATCGAACCCATTCAATCCCGT TGCGCCATTCTCCGTTATGCCCGACTGACAGATGCTCAGGTGGTCAAACGGTTGATGCAGATTTGCGAGGCGGAG AATGTCCAGCACTCCGAGGATGGAATCGCTGCACTTGTTTTCAGTGCAGAGGGCGACATGCGTCAGGCCATCAAC AACCTGCAGAGTACTTGGTCCGGTTTCGGTTTCGTCAGCGGAGACAATGTTTTCCGAGTAGTCGACAGCCCGCAC CCGATCAAAGTTCAGGCCATGATCAAGGCTTGTTGGGAAGGCAAGGTGGATGTGGCACTGGAGGGGCTGAACGAG CTATGGACCCTGGGTTACTCCTCTCACGACATCATAAGTACCATGTTTCGAGTCACCAAGACCATCCCCACATTG TCTGAGCATTCCAAATTGGAGTTCATTCGGGAGATTGGATTCACGCATATGCGTATTCTGGATGGTGTGCAGTCA CTACTTCAATTGAGTGGCTGTGTGGCGAAGCTTTGCAAGATTAACATGAAACCAGATTTGTTCGAGCCTCCCAAG GCTTGA |
| Transcript | >Pro_DTO377G3_2|g9023.t1 ATGGTTCAAGCTGAATCTTCCTCTGCTTCTCGCAATGCTGCTAAGGCAAATACTGCCGGTGCCCCTGTGGACTAT GAGCTTCCCTGGGTCGAGAAATACCGCCCAACCTTCCTCGATGATATTGTCGGCAACACTGAAACAGTGGAACGG TTAAAGATCATTGCCAAAGATGGTAATATGCCACACGTTATCATCTCTGGCATGCCGGGTATTGGAAAGACCACT TCAGTATTATGTCTGGCGCGGCAAATGCTGGGAGATGCATACAAGGAGGCAGTTCTGGAGCTGAATGCAAGTGAT GAGAGAGGTATCGATGTGGTGCGAAATCGGATCAAAGGTTTTGCCCAAAAGAAGGTTACCCTGCCACAAGGACGC CATAAATTGGTCATCCTTGATGAAGCTGATAGCATGACCGCCGGTGCTCAACAAGCCCTACGACGAACTATGGAA ATCTATTCCTCCACCACACGATTTGCCTTTGCCTGTAACCAGTCGAACAAGATCATCGAACCCATTCAATCCCGT TGCGCCATTCTCCGTTATGCCCGACTGACAGATGCTCAGGTGGTCAAACGGTTGATGCAGATTTGCGAGGCGGAG AATGTCCAGCACTCCGAGGATGGAATCGCTGCACTTGTTTTCAGTGCAGAGGGCGACATGCGTCAGGCCATCAAC AACCTGCAGAGTACTTGGTCCGGTTTCGGTTTCGTCAGCGGAGACAATGTTTTCCGAGTAGTCGACAGCCCGCAC CCGATCAAAGTTCAGGCCATGATCAAGGCTTGTTGGGAAGGCAAGGTGGATGTGGCACTGGAGGGGCTGAACGAG CTATGGACCCTGGGTTACTCCTCTCACGACATCATAAGTACCATGTTTCGAGTCACCAAGACCATCCCCACATTG TCTGAGCATTCCAAATTGGAGTTCATTCGGGAGATTGGATTCACGCATATGCGTATTCTGGATGGTGTGCAGTCA CTACTTCAATTGAGTGGCTGTGTGGCGAAGCTTTGCAAGATTAACATGAAACCAGATTTGTTCGAGCCTCCCAAG GCTTGA |
| Gene | >Pro_DTO377G3_2|g9023.t1 ATGGTTCAAGCTGAATCTTCCTCTGCTTCTCGCAATGCTGCTAAGGCAAATACTGCCGGTGCCCCTGTGGACTAT GAGCTTCCCTGGTAGGCTTTCCTTTCTTGACAATATCAGGTAGAGCTAATCTTTGGCTTGTCAATAGGGTCGAGA AATACCGCCCAACCTTCCTCGATGATATTGTCGGCAACACTGAAACAGTGGAACGGTTAAAGATCATTGCCAAAG ATGGTAATATGCCACACGTTATCATCTCTGGCATGCCGGGTATTGGAAAGACCACTTCAGTATTATGTCTGGCGC GGCAAATGCTGGGAGATGCATACAAGGAGGCAGTTCTGGAGCTGAATGCAAGTGATGAGAGAGGTTAGTTGTGGC ATAATCGCTCTCATGACTTGGTCGATATTGATGCTGTGGTCTAGGTATCGATGTGGTGCGAAATCGGATCAAAGG TTTTGCCCAAAAGAAGGTTACCCTGCCACAAGGACGCCATAAATTGGTCATCCTTGATGAAGCTGATAGGTTTGT TCTCGTCAGAGTTTCCTTCTGGTCACTGGACTCACGTCTCCCCGCAGCATGACCGCCGGTGCTCAACAAGCCCTA CGACGAACTATGGAAATCTATTCCTCCACCACACGATTTGCCTTTGCCTGTAACCAGTCGAACAAGATCATCGAA CCCATTCAATCCCGTTGCGCCATTCTCCGTTATGCCCGACTGACAGATGCTCAGGTGGTCAAACGGTTGATGCAG ATTTGCGAGGCGGAGAATGTCCAGCACTCCGAGGATGGAATCGCTGCACTTGTTTTCAGTGCAGAGGGCGACATG CGTCAGGCCATCAACAACCTGCAGAGTACTTGGTCCGGTTTCGGTTTCGTCAGCGGAGACAATGTTTTCCGAGTA GTCGACAGCCCGCACCCGATCAAAGTTCAGGCCATGATCAAGGCTTGTTGGGAAGGCAAGGTGGATGTGGCACTG GAGGGGCTGAACGAGCTATGGTATGTTGTAAATTTGTTTGTTTTGGGGTGCTGGTTTCTAACCGATCTATCTAAA GGACCCTGGGTTACTCCTCTCACGACATCATAAGTACCATGTTTCGAGTCACCAAGACCATCCCCACATTGTCTG AGCATTCCAAATTGGAGTTCATTCGGGAGATTGGATTCACGCATATGCGTATTCTGGATGGTGTGCAGTCACTAC TTCAATTGAGTGGCTGTGTGGCGAAGCTTTGCAAGATTAACATGAAACCAGATTTGTTCGAGCCTCCCAAGGCTT GA |