Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g9023.t1
Gene name
Locationscaffold_40:97462..98739
Strand+
Gene length (bp)1277
Transcript length (bp)1056
Coding sequence length (bp)1056
Protein length (aa) 352

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08542 Rep_fac_C Replication factor C C-terminal domain 3.2E-21 249 335
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 4.1E-09 103 183
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.2E-11 63 180
PF13173 AAA_14 AAA domain 3.0E-06 62 167
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 3.8E-05 34 85
PF01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase 2.3E-04 64 144

GO

GO Term Description Terminal node
GO:0006310 DNA recombination Yes
GO:0005524 ATP binding Yes
GO:0006281 DNA repair Yes
GO:0009378 four-way junction helicase activity Yes
GO:0006139 nucleobase-containing compound metabolic process No
GO:0017111 nucleoside-triphosphatase activity No
GO:0009987 cellular process No
GO:0043170 macromolecule metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0043168 anion binding No
GO:0004386 helicase activity No
GO:0032559 adenyl ribonucleotide binding No
GO:0044238 primary metabolic process No
GO:0003824 catalytic activity No
GO:0006950 response to stress No
GO:0033554 cellular response to stress No
GO:0044260 cellular macromolecule metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0032553 ribonucleotide binding No
GO:0071704 organic substance metabolic process No
GO:0016462 pyrophosphatase activity No
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides No
GO:0097159 organic cyclic compound binding No
GO:0032555 purine ribonucleotide binding No
GO:1901363 heterocyclic compound binding No
GO:0090304 nucleic acid metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0003674 molecular_function No
GO:0036094 small molecule binding No
GO:0003678 DNA helicase activity No
GO:0044237 cellular metabolic process No
GO:0016817 hydrolase activity, acting on acid anhydrides No
GO:0050896 response to stimulus No
GO:0005488 binding No
GO:0006259 DNA metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0035639 purine ribonucleoside triphosphate binding No
GO:0043167 ion binding No
GO:0006807 nitrogen compound metabolic process No
GO:0006974 cellular response to DNA damage stimulus No
GO:0000166 nucleotide binding No
GO:0008144 drug binding No
GO:0051716 cellular response to stimulus No
GO:0008150 biological_process No
GO:0140097 catalytic activity, acting on DNA No
GO:0016787 hydrolase activity No
GO:0008152 metabolic process No
GO:0030554 adenyl nucleotide binding No
GO:0097367 carbohydrate derivative binding No
GO:0017076 purine nucleotide binding No
GO:1901265 nucleoside phosphate binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g9023.t1
MVQAESSSASRNAAKANTAGAPVDYELPWVEKYRPTFLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTT
SVLCLARQMLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTAGAQQALRRTME
IYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDAQVVKRLMQICEAENVQHSEDGIAALVFSAEGDMRQAIN
NLQSTWSGFGFVSGDNVFRVVDSPHPIKVQAMIKACWEGKVDVALEGLNELWTLGYSSHDIISTMFRVTKTIPTL
SEHSKLEFIREIGFTHMRILDGVQSLLQLSGCVAKLCKINMKPDLFEPPKA*
Coding >Pro_DTO377G3_2|g9023.t1
ATGGTTCAAGCTGAATCTTCCTCTGCTTCTCGCAATGCTGCTAAGGCAAATACTGCCGGTGCCCCTGTGGACTAT
GAGCTTCCCTGGGTCGAGAAATACCGCCCAACCTTCCTCGATGATATTGTCGGCAACACTGAAACAGTGGAACGG
TTAAAGATCATTGCCAAAGATGGTAATATGCCACACGTTATCATCTCTGGCATGCCGGGTATTGGAAAGACCACT
TCAGTATTATGTCTGGCGCGGCAAATGCTGGGAGATGCATACAAGGAGGCAGTTCTGGAGCTGAATGCAAGTGAT
GAGAGAGGTATCGATGTGGTGCGAAATCGGATCAAAGGTTTTGCCCAAAAGAAGGTTACCCTGCCACAAGGACGC
CATAAATTGGTCATCCTTGATGAAGCTGATAGCATGACCGCCGGTGCTCAACAAGCCCTACGACGAACTATGGAA
ATCTATTCCTCCACCACACGATTTGCCTTTGCCTGTAACCAGTCGAACAAGATCATCGAACCCATTCAATCCCGT
TGCGCCATTCTCCGTTATGCCCGACTGACAGATGCTCAGGTGGTCAAACGGTTGATGCAGATTTGCGAGGCGGAG
AATGTCCAGCACTCCGAGGATGGAATCGCTGCACTTGTTTTCAGTGCAGAGGGCGACATGCGTCAGGCCATCAAC
AACCTGCAGAGTACTTGGTCCGGTTTCGGTTTCGTCAGCGGAGACAATGTTTTCCGAGTAGTCGACAGCCCGCAC
CCGATCAAAGTTCAGGCCATGATCAAGGCTTGTTGGGAAGGCAAGGTGGATGTGGCACTGGAGGGGCTGAACGAG
CTATGGACCCTGGGTTACTCCTCTCACGACATCATAAGTACCATGTTTCGAGTCACCAAGACCATCCCCACATTG
TCTGAGCATTCCAAATTGGAGTTCATTCGGGAGATTGGATTCACGCATATGCGTATTCTGGATGGTGTGCAGTCA
CTACTTCAATTGAGTGGCTGTGTGGCGAAGCTTTGCAAGATTAACATGAAACCAGATTTGTTCGAGCCTCCCAAG
GCTTGA
Transcript >Pro_DTO377G3_2|g9023.t1
ATGGTTCAAGCTGAATCTTCCTCTGCTTCTCGCAATGCTGCTAAGGCAAATACTGCCGGTGCCCCTGTGGACTAT
GAGCTTCCCTGGGTCGAGAAATACCGCCCAACCTTCCTCGATGATATTGTCGGCAACACTGAAACAGTGGAACGG
TTAAAGATCATTGCCAAAGATGGTAATATGCCACACGTTATCATCTCTGGCATGCCGGGTATTGGAAAGACCACT
TCAGTATTATGTCTGGCGCGGCAAATGCTGGGAGATGCATACAAGGAGGCAGTTCTGGAGCTGAATGCAAGTGAT
GAGAGAGGTATCGATGTGGTGCGAAATCGGATCAAAGGTTTTGCCCAAAAGAAGGTTACCCTGCCACAAGGACGC
CATAAATTGGTCATCCTTGATGAAGCTGATAGCATGACCGCCGGTGCTCAACAAGCCCTACGACGAACTATGGAA
ATCTATTCCTCCACCACACGATTTGCCTTTGCCTGTAACCAGTCGAACAAGATCATCGAACCCATTCAATCCCGT
TGCGCCATTCTCCGTTATGCCCGACTGACAGATGCTCAGGTGGTCAAACGGTTGATGCAGATTTGCGAGGCGGAG
AATGTCCAGCACTCCGAGGATGGAATCGCTGCACTTGTTTTCAGTGCAGAGGGCGACATGCGTCAGGCCATCAAC
AACCTGCAGAGTACTTGGTCCGGTTTCGGTTTCGTCAGCGGAGACAATGTTTTCCGAGTAGTCGACAGCCCGCAC
CCGATCAAAGTTCAGGCCATGATCAAGGCTTGTTGGGAAGGCAAGGTGGATGTGGCACTGGAGGGGCTGAACGAG
CTATGGACCCTGGGTTACTCCTCTCACGACATCATAAGTACCATGTTTCGAGTCACCAAGACCATCCCCACATTG
TCTGAGCATTCCAAATTGGAGTTCATTCGGGAGATTGGATTCACGCATATGCGTATTCTGGATGGTGTGCAGTCA
CTACTTCAATTGAGTGGCTGTGTGGCGAAGCTTTGCAAGATTAACATGAAACCAGATTTGTTCGAGCCTCCCAAG
GCTTGA
Gene >Pro_DTO377G3_2|g9023.t1
ATGGTTCAAGCTGAATCTTCCTCTGCTTCTCGCAATGCTGCTAAGGCAAATACTGCCGGTGCCCCTGTGGACTAT
GAGCTTCCCTGGTAGGCTTTCCTTTCTTGACAATATCAGGTAGAGCTAATCTTTGGCTTGTCAATAGGGTCGAGA
AATACCGCCCAACCTTCCTCGATGATATTGTCGGCAACACTGAAACAGTGGAACGGTTAAAGATCATTGCCAAAG
ATGGTAATATGCCACACGTTATCATCTCTGGCATGCCGGGTATTGGAAAGACCACTTCAGTATTATGTCTGGCGC
GGCAAATGCTGGGAGATGCATACAAGGAGGCAGTTCTGGAGCTGAATGCAAGTGATGAGAGAGGTTAGTTGTGGC
ATAATCGCTCTCATGACTTGGTCGATATTGATGCTGTGGTCTAGGTATCGATGTGGTGCGAAATCGGATCAAAGG
TTTTGCCCAAAAGAAGGTTACCCTGCCACAAGGACGCCATAAATTGGTCATCCTTGATGAAGCTGATAGGTTTGT
TCTCGTCAGAGTTTCCTTCTGGTCACTGGACTCACGTCTCCCCGCAGCATGACCGCCGGTGCTCAACAAGCCCTA
CGACGAACTATGGAAATCTATTCCTCCACCACACGATTTGCCTTTGCCTGTAACCAGTCGAACAAGATCATCGAA
CCCATTCAATCCCGTTGCGCCATTCTCCGTTATGCCCGACTGACAGATGCTCAGGTGGTCAAACGGTTGATGCAG
ATTTGCGAGGCGGAGAATGTCCAGCACTCCGAGGATGGAATCGCTGCACTTGTTTTCAGTGCAGAGGGCGACATG
CGTCAGGCCATCAACAACCTGCAGAGTACTTGGTCCGGTTTCGGTTTCGTCAGCGGAGACAATGTTTTCCGAGTA
GTCGACAGCCCGCACCCGATCAAAGTTCAGGCCATGATCAAGGCTTGTTGGGAAGGCAAGGTGGATGTGGCACTG
GAGGGGCTGAACGAGCTATGGTATGTTGTAAATTTGTTTGTTTTGGGGTGCTGGTTTCTAACCGATCTATCTAAA
GGACCCTGGGTTACTCCTCTCACGACATCATAAGTACCATGTTTCGAGTCACCAAGACCATCCCCACATTGTCTG
AGCATTCCAAATTGGAGTTCATTCGGGAGATTGGATTCACGCATATGCGTATTCTGGATGGTGTGCAGTCACTAC
TTCAATTGAGTGGCTGTGTGGCGAAGCTTTGCAAGATTAACATGAAACCAGATTTGTTCGAGCCTCCCAAGGCTT
GA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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