© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9019.t1 |
| Gene name | |
| Location | scaffold_40:91043..92490 |
| Strand | + |
| Gene length (bp) | 1447 |
| Transcript length (bp) | 1386 |
| Coding sequence length (bp) | 1386 |
| Protein length (aa) | 462 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01715 | IPPT | IPP transferase | 2.4E-67 | 37 | 322 |
| PF12874 | zf-met | Zinc-finger of C2H2 type | 5.6E-07 | 401 | 425 |
| PF12171 | zf-C2H2_jaz | Zinc-finger double-stranded RNA-binding | 5.4E-05 | 401 | 426 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 27.38 | 14.87 | 39.89 |
| 5d_25C | Five days - 25 degrees Celsius | 26.10 | 13.92 | 38.28 |
| 7d_25C | Seven days - 25 degrees Celsius | 29.82 | 16.34 | 43.29 |
| 10d_25C | Ten days - 25 degrees Celsius | 21.48 | 10.88 | 32.08 |
| 7d_15C | Seven days - 15 degrees Celsius | 34.50 | 19.22 | 49.78 |
| 7d_30C | Seven days - 30 degrees Celsius | 20.48 | 10.18 | 30.77 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.904839 | no |
| 3d_25C | 7d_25C | 0.809461 | no |
| 3d_25C | 7d_15C | 0.410025 | no |
| 3d_25C | 7d_30C | 0.318308 | no |
| 3d_25C | 10d_25C | 0.417303 | no |
| 5d_25C | 7d_25C | 0.687849 | no |
| 5d_25C | 7d_15C | 0.299252 | no |
| 5d_25C | 7d_30C | 0.424814 | no |
| 5d_25C | 10d_25C | 0.538626 | no |
| 7d_25C | 7d_15C | 0.641044 | no |
| 7d_25C | 7d_30C | 0.169602 | no |
| 7d_25C | 10d_25C | 0.232755 | no |
| 7d_15C | 7d_30C | 0.041216 | yes |
| 7d_15C | 10d_25C | 0.060029 | no |
| 7d_30C | 10d_25C | 0.910323 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9019.t1 MNPLIAVVGATGTGKSKLAVDLASRFNGEIINGDAMQMYRGLPIITNQIPIEERNGIPHHLLSCIDLDAEAWRIG LFKREALRVIEDIHARGKVPILVGGTHYYTQAVLFKEQLVGEGVDDEGEREQLMEFSTTSNKWPILDSSPEVVLE KLREVDPVMAARWHPRDARKIRRSLEIYFQTGRRASEIYKEQFSQKRKAIDQEEGLLRFENTLVFWVHAEKEVLN ARLDARVDDMVKQGLMTEAEKMSNYLQEKASQGIEVDQTRGVWVSIGFKELAPYFKAIRDGEASEKEIEDLKRNS LELIRIATRQYGTSQVKWIRNKLWQALTEVGETRRLYLLDSSNVSDWSKCITEPSEEIMQLMQQNKLTPDPKSLS QLATAEFSAKEAQEKRVQADPIGKCYTCDVCQKTMASEDQWHIHLNSHQHKRGLKSARKRAQRDEYFRKKELEAQ GIQAPETEPGS* |
| Coding | >Pro_DTO377G3_2|g9019.t1 ATGAATCCGCTGATAGCTGTCGTGGGCGCCACAGGCACAGGCAAGTCAAAGCTTGCAGTGGACTTGGCCTCTCGA TTCAATGGTGAAATCATCAATGGCGACGCAATGCAGATGTACCGCGGTTTGCCGATCATAACGAACCAGATCCCG ATAGAGGAACGGAACGGTATCCCTCATCACCTCCTCAGTTGTATCGACTTAGACGCGGAAGCATGGCGCATAGGA CTGTTCAAACGAGAAGCCCTGAGAGTCATTGAAGACATCCACGCCCGTGGCAAGGTCCCCATTCTTGTTGGTGGC ACCCACTATTATACCCAAGCAGTGCTGTTCAAAGAACAGCTTGTGGGCGAGGGGGTGGACGACGAAGGCGAGCGG GAACAGCTCATGGAGTTTAGCACAACCTCGAATAAATGGCCGATTCTGGATTCGTCGCCTGAAGTTGTCTTGGAG AAGCTGCGCGAGGTGGATCCCGTTATGGCTGCGCGATGGCACCCGAGAGATGCACGGAAAATCCGGCGGTCATTA GAAATCTATTTTCAGACAGGGCGGCGAGCATCGGAGATTTATAAAGAGCAATTCTCTCAAAAGAGAAAGGCGATA GACCAGGAGGAAGGGCTGCTACGGTTCGAGAATACATTGGTATTTTGGGTCCATGCCGAGAAGGAGGTCCTCAAC GCACGCCTGGATGCGCGCGTCGATGACATGGTCAAGCAGGGCTTGATGACCGAGGCGGAGAAGATGTCGAACTAC TTGCAGGAGAAAGCCTCGCAGGGAATTGAAGTTGACCAAACACGGGGAGTCTGGGTGTCCATTGGATTCAAGGAA TTGGCGCCATACTTCAAGGCTATCCGGGACGGGGAAGCAAGCGAGAAAGAAATCGAAGATCTCAAACGAAACTCT CTTGAATTAATTCGGATCGCCACACGACAGTACGGAACATCGCAGGTCAAATGGATCCGCAATAAACTCTGGCAA GCACTCACAGAAGTCGGAGAGACACGTCGTCTTTATCTCCTAGACAGTTCCAATGTCAGCGACTGGAGCAAGTGC ATCACTGAGCCGTCCGAAGAGATTATGCAACTGATGCAGCAAAATAAGCTGACCCCCGATCCCAAATCGCTTTCT CAGTTAGCAACGGCGGAGTTCAGCGCGAAGGAAGCCCAGGAAAAGCGTGTGCAGGCAGACCCTATCGGGAAGTGC TACACCTGTGACGTCTGCCAGAAGACAATGGCATCCGAGGACCAGTGGCATATTCATTTAAATAGTCATCAGCAT AAAAGGGGACTCAAGTCTGCGAGGAAGAGGGCACAGCGAGATGAATATTTCCGAAAGAAGGAATTGGAAGCTCAG GGGATTCAGGCCCCTGAAACCGAACCTGGGTCATGA |
| Transcript | >Pro_DTO377G3_2|g9019.t1 ATGAATCCGCTGATAGCTGTCGTGGGCGCCACAGGCACAGGCAAGTCAAAGCTTGCAGTGGACTTGGCCTCTCGA TTCAATGGTGAAATCATCAATGGCGACGCAATGCAGATGTACCGCGGTTTGCCGATCATAACGAACCAGATCCCG ATAGAGGAACGGAACGGTATCCCTCATCACCTCCTCAGTTGTATCGACTTAGACGCGGAAGCATGGCGCATAGGA CTGTTCAAACGAGAAGCCCTGAGAGTCATTGAAGACATCCACGCCCGTGGCAAGGTCCCCATTCTTGTTGGTGGC ACCCACTATTATACCCAAGCAGTGCTGTTCAAAGAACAGCTTGTGGGCGAGGGGGTGGACGACGAAGGCGAGCGG GAACAGCTCATGGAGTTTAGCACAACCTCGAATAAATGGCCGATTCTGGATTCGTCGCCTGAAGTTGTCTTGGAG AAGCTGCGCGAGGTGGATCCCGTTATGGCTGCGCGATGGCACCCGAGAGATGCACGGAAAATCCGGCGGTCATTA GAAATCTATTTTCAGACAGGGCGGCGAGCATCGGAGATTTATAAAGAGCAATTCTCTCAAAAGAGAAAGGCGATA GACCAGGAGGAAGGGCTGCTACGGTTCGAGAATACATTGGTATTTTGGGTCCATGCCGAGAAGGAGGTCCTCAAC GCACGCCTGGATGCGCGCGTCGATGACATGGTCAAGCAGGGCTTGATGACCGAGGCGGAGAAGATGTCGAACTAC TTGCAGGAGAAAGCCTCGCAGGGAATTGAAGTTGACCAAACACGGGGAGTCTGGGTGTCCATTGGATTCAAGGAA TTGGCGCCATACTTCAAGGCTATCCGGGACGGGGAAGCAAGCGAGAAAGAAATCGAAGATCTCAAACGAAACTCT CTTGAATTAATTCGGATCGCCACACGACAGTACGGAACATCGCAGGTCAAATGGATCCGCAATAAACTCTGGCAA GCACTCACAGAAGTCGGAGAGACACGTCGTCTTTATCTCCTAGACAGTTCCAATGTCAGCGACTGGAGCAAGTGC ATCACTGAGCCGTCCGAAGAGATTATGCAACTGATGCAGCAAAATAAGCTGACCCCCGATCCCAAATCGCTTTCT CAGTTAGCAACGGCGGAGTTCAGCGCGAAGGAAGCCCAGGAAAAGCGTGTGCAGGCAGACCCTATCGGGAAGTGC TACACCTGTGACGTCTGCCAGAAGACAATGGCATCCGAGGACCAGTGGCATATTCATTTAAATAGTCATCAGCAT AAAAGGGGACTCAAGTCTGCGAGGAAGAGGGCACAGCGAGATGAATATTTCCGAAAGAAGGAATTGGAAGCTCAG GGGATTCAGGCCCCTGAAACCGAACCTGGGTCATGA |
| Gene | >Pro_DTO377G3_2|g9019.t1 ATGAATCCGCTGATAGCTGTCGTGGGCGCCACAGGCACAGGCAAGTCAAAGGTAATGACTCCAGGTACCTCCAAA ACTTCCTCCGAACACAATGACTGATAGCTGTAGACAGCTTGCAGTGGACTTGGCCTCTCGATTCAATGGTGAAAT CATCAATGGCGACGCAATGCAGATGTACCGCGGTTTGCCGATCATAACGAACCAGATCCCGATAGAGGAACGGAA CGGTATCCCTCATCACCTCCTCAGTTGTATCGACTTAGACGCGGAAGCATGGCGCATAGGACTGTTCAAACGAGA AGCCCTGAGAGTCATTGAAGACATCCACGCCCGTGGCAAGGTCCCCATTCTTGTTGGTGGCACCCACTATTATAC CCAAGCAGTGCTGTTCAAAGAACAGCTTGTGGGCGAGGGGGTGGACGACGAAGGCGAGCGGGAACAGCTCATGGA GTTTAGCACAACCTCGAATAAATGGCCGATTCTGGATTCGTCGCCTGAAGTTGTCTTGGAGAAGCTGCGCGAGGT GGATCCCGTTATGGCTGCGCGATGGCACCCGAGAGATGCACGGAAAATCCGGCGGTCATTAGAAATCTATTTTCA GACAGGGCGGCGAGCATCGGAGATTTATAAAGAGCAATTCTCTCAAAAGAGAAAGGCGATAGACCAGGAGGAAGG GCTGCTACGGTTCGAGAATACATTGGTATTTTGGGTCCATGCCGAGAAGGAGGTCCTCAACGCACGCCTGGATGC GCGCGTCGATGACATGGTCAAGCAGGGCTTGATGACCGAGGCGGAGAAGATGTCGAACTACTTGCAGGAGAAAGC CTCGCAGGGAATTGAAGTTGACCAAACACGGGGAGTCTGGGTGTCCATTGGATTCAAGGAATTGGCGCCATACTT CAAGGCTATCCGGGACGGGGAAGCAAGCGAGAAAGAAATCGAAGATCTCAAACGAAACTCTCTTGAATTAATTCG GATCGCCACACGACAGTACGGAACATCGCAGGTCAAATGGATCCGCAATAAACTCTGGCAAGCACTCACAGAAGT CGGAGAGACACGTCGTCTTTATCTCCTAGACAGTTCCAATGTCAGCGACTGGAGCAAGTGCATCACTGAGCCGTC CGAAGAGATTATGCAACTGATGCAGCAAAATAAGCTGACCCCCGATCCCAAATCGCTTTCTCAGTTAGCAACGGC GGAGTTCAGCGCGAAGGAAGCCCAGGAAAAGCGTGTGCAGGCAGACCCTATCGGGAAGTGCTACACCTGTGACGT CTGCCAGAAGACAATGGCATCCGAGGACCAGTGGCATATTCATTTAAATAGTCATCAGCATAAAAGGGGACTCAA GTCTGCGAGGAAGAGGGCACAGCGAGATGAATATTTCCGAAAGAAGGAATTGGAAGCTCAGGGGATTCAGGCCCC TGAAACCGAACCTGGGTCATGA |