© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9010.t1 |
| Gene name | |
| Location | scaffold_40:63508..65958 |
| Strand | + |
| Gene length (bp) | 2450 |
| Transcript length (bp) | 1779 |
| Coding sequence length (bp) | 1779 |
| Protein length (aa) | 593 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00400 | WD40 | WD domain, G-beta repeat | 2.8E-04 | 279 | 313 |
| PF00400 | WD40 | WD domain, G-beta repeat | 2.4E-07 | 331 | 361 |
| PF00400 | WD40 | WD domain, G-beta repeat | 2.0E-09 | 368 | 403 |
| PF00400 | WD40 | WD domain, G-beta repeat | 2.0E-06 | 409 | 444 |
| PF00400 | WD40 | WD domain, G-beta repeat | 2.3E-06 | 456 | 488 |
| PF00400 | WD40 | WD domain, G-beta repeat | 2.8E-09 | 505 | 543 |
| PF00400 | WD40 | WD domain, G-beta repeat | 5.5E-05 | 549 | 584 |
| PF08581 | Tup_N | Tup N-terminal | 1.9E-18 | 15 | 86 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 118.28 | 72.27 | 164.29 |
| 5d_25C | Five days - 25 degrees Celsius | 99.91 | 61.01 | 138.81 |
| 7d_25C | Seven days - 25 degrees Celsius | 101.20 | 61.89 | 140.51 |
| 10d_25C | Ten days - 25 degrees Celsius | 126.51 | 77.19 | 175.84 |
| 7d_15C | Seven days - 15 degrees Celsius | 130.24 | 78.89 | 181.60 |
| 7d_30C | Seven days - 30 degrees Celsius | 109.84 | 67.25 | 152.42 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.514385 | no |
| 3d_25C | 7d_25C | 0.555886 | no |
| 3d_25C | 7d_15C | 0.742881 | no |
| 3d_25C | 7d_30C | 0.806227 | no |
| 3d_25C | 10d_25C | 0.827065 | no |
| 5d_25C | 7d_25C | 0.971501 | no |
| 5d_25C | 7d_15C | 0.255193 | no |
| 5d_25C | 7d_30C | 0.740389 | no |
| 5d_25C | 10d_25C | 0.315816 | no |
| 7d_25C | 7d_15C | 0.290696 | no |
| 7d_25C | 7d_30C | 0.783249 | no |
| 7d_25C | 10d_25C | 0.355469 | no |
| 7d_15C | 7d_30C | 0.504981 | no |
| 7d_15C | 10d_25C | 0.931822 | no |
| 7d_30C | 10d_25C | 0.596716 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9010.t1 MYNAHRGMVPAPNSRLTELLDQLRQEFESQSRNTGEFEHQYHAVTGQLQEMEMIRQKVYQLEQAQIKIKQDYEAE IRMLRHELESRGVQSIPSHIGGPAAAHTAPSQAPPPALGHGPSNLFGGIMTNPPGSGPGLAPSLPQDQQPPQHPL QQPASVAQPGAPQPQQSSFGGYPAGAAVNGYGPPPPPTASPGPGKGRGRVPPGPGTPQQTHIAYPDPRASPQIPR PTPPNPPLGRTAERPGNMLANWNPDDLPPSQKREGSDWYAVFNPEVQRVLDVELVHHLNHDSVVCCVRFSRDGKY LATGCNRSAQIFDVTTGQNVATLQDENVDKDGDLYIRSVCFSPDGKYLATGAEDKQIRVWDINQRTIKHIFSGHE QDIYSLDFAGNGRFIASGSGDKTVRLWDILDGKLVYTLSIEDGVTTVAMSPDGRYVAAGSLDKSVRVWDTTTGYL VERLESPDGHKDSVYSVAFAPNGRDLVSGSLDKTIKLWELTVPRGMHPHSAVKGGKCIRTFEGHKDFVLSVCLTP DGAWVMSGSKDRGVQFWDPVTGNAQMMLQGHKNSVISVAPSPTGNLFATGSGDMRARIWRYSAYTGR* |
| Coding | >Pro_DTO377G3_2|g9010.t1 ATGTACAACGCTCATCGCGGGATGGTACCCGCTCCCAACTCCCGTCTGACGGAGTTGTTGGATCAACTGCGCCAG GAGTTTGAGAGCCAGTCGCGAAACACCGGTGAATTCGAGCATCAGTATCATGCAGTGACCGGACAGCTCCAGGAG ATGGAGATGATCCGTCAGAAGGTCTATCAACTGGAACAGGCGCAGATCAAGATCAAGCAAGACTATGAAGCTGAG ATCCGAATGCTGCGACACGAACTTGAGTCCCGTGGCGTGCAATCTATCCCTTCCCACATCGGCGGACCCGCGGCG GCTCATACAGCTCCTTCCCAGGCTCCCCCACCTGCCTTGGGCCACGGCCCCAGCAATCTGTTTGGCGGTATCATG ACCAACCCACCAGGTAGTGGCCCCGGTCTTGCACCTTCCCTTCCCCAGGATCAGCAGCCTCCCCAGCATCCCCTT CAACAGCCTGCTTCGGTCGCTCAGCCTGGCGCGCCGCAACCCCAGCAGAGCTCCTTTGGAGGATATCCGGCTGGC GCTGCTGTGAACGGCTATGGGCCGCCTCCACCTCCTACTGCATCCCCAGGCCCTGGTAAGGGCCGTGGTCGCGTT CCCCCAGGCCCCGGTACCCCCCAGCAAACGCACATCGCCTACCCGGATCCTCGTGCTTCCCCTCAGATCCCTCGC CCGACTCCTCCGAACCCCCCTCTCGGCCGCACAGCCGAACGTCCAGGAAATATGCTGGCAAACTGGAACCCCGAT GATTTGCCTCCGTCGCAGAAGCGTGAGGGTTCTGATTGGTATGCCGTGTTCAACCCCGAGGTCCAGCGTGTTCTC GATGTGGAACTGGTACATCACTTGAACCACGACAGCGTCGTTTGCTGTGTGCGCTTTAGCCGTGACGGCAAATAC TTGGCTACAGGCTGTAACCGCTCGGCTCAAATCTTCGACGTGACCACCGGTCAAAATGTGGCCACCTTGCAGGAT GAAAACGTCGACAAGGACGGCGACTTATACATTCGCAGCGTTTGCTTCAGTCCGGATGGCAAATATCTTGCGACT GGTGCTGAAGATAAGCAGATTCGGGTTTGGGATATCAACCAGCGCACCATCAAACATATCTTCAGTGGACACGAG CAGGACATCTACTCTTTGGACTTTGCTGGCAACGGTCGATTCATCGCCTCTGGCAGTGGAGATAAGACCGTGCGC CTTTGGGATATTCTCGACGGCAAGCTTGTCTACACCCTTAGCATTGAGGATGGTGTCACTACTGTGGCCATGTCT CCGGATGGCCGTTACGTAGCCGCGGGCTCGTTGGACAAGAGCGTGCGCGTTTGGGACACTACAACTGGATACCTG GTAGAACGCCTAGAGAGCCCAGATGGCCACAAGGACAGTGTTTACTCGGTCGCGTTTGCACCCAATGGCCGTGAC CTTGTCAGTGGCAGTCTGGACAAGACTATCAAGCTCTGGGAGCTTACCGTTCCCCGGGGCATGCACCCTCACAGT GCCGTCAAGGGCGGCAAGTGTATTCGTACATTCGAGGGCCACAAGGACTTTGTTCTCAGTGTGTGCCTGACACCC GACGGTGCTTGGGTGATGAGTGGTTCCAAGGACCGTGGTGTTCAGTTCTGGGACCCAGTGACTGGAAATGCCCAA ATGATGCTTCAAGGCCACAAGAACTCTGTCATCTCGGTTGCACCCAGTCCTACTGGCAACCTGTTCGCGACCGGC AGTGGAGACATGCGTGCACGAATCTGGAGATACTCGGCGTATACTGGACGATGA |
| Transcript | >Pro_DTO377G3_2|g9010.t1 ATGTACAACGCTCATCGCGGGATGGTACCCGCTCCCAACTCCCGTCTGACGGAGTTGTTGGATCAACTGCGCCAG GAGTTTGAGAGCCAGTCGCGAAACACCGGTGAATTCGAGCATCAGTATCATGCAGTGACCGGACAGCTCCAGGAG ATGGAGATGATCCGTCAGAAGGTCTATCAACTGGAACAGGCGCAGATCAAGATCAAGCAAGACTATGAAGCTGAG ATCCGAATGCTGCGACACGAACTTGAGTCCCGTGGCGTGCAATCTATCCCTTCCCACATCGGCGGACCCGCGGCG GCTCATACAGCTCCTTCCCAGGCTCCCCCACCTGCCTTGGGCCACGGCCCCAGCAATCTGTTTGGCGGTATCATG ACCAACCCACCAGGTAGTGGCCCCGGTCTTGCACCTTCCCTTCCCCAGGATCAGCAGCCTCCCCAGCATCCCCTT CAACAGCCTGCTTCGGTCGCTCAGCCTGGCGCGCCGCAACCCCAGCAGAGCTCCTTTGGAGGATATCCGGCTGGC GCTGCTGTGAACGGCTATGGGCCGCCTCCACCTCCTACTGCATCCCCAGGCCCTGGTAAGGGCCGTGGTCGCGTT CCCCCAGGCCCCGGTACCCCCCAGCAAACGCACATCGCCTACCCGGATCCTCGTGCTTCCCCTCAGATCCCTCGC CCGACTCCTCCGAACCCCCCTCTCGGCCGCACAGCCGAACGTCCAGGAAATATGCTGGCAAACTGGAACCCCGAT GATTTGCCTCCGTCGCAGAAGCGTGAGGGTTCTGATTGGTATGCCGTGTTCAACCCCGAGGTCCAGCGTGTTCTC GATGTGGAACTGGTACATCACTTGAACCACGACAGCGTCGTTTGCTGTGTGCGCTTTAGCCGTGACGGCAAATAC TTGGCTACAGGCTGTAACCGCTCGGCTCAAATCTTCGACGTGACCACCGGTCAAAATGTGGCCACCTTGCAGGAT GAAAACGTCGACAAGGACGGCGACTTATACATTCGCAGCGTTTGCTTCAGTCCGGATGGCAAATATCTTGCGACT GGTGCTGAAGATAAGCAGATTCGGGTTTGGGATATCAACCAGCGCACCATCAAACATATCTTCAGTGGACACGAG CAGGACATCTACTCTTTGGACTTTGCTGGCAACGGTCGATTCATCGCCTCTGGCAGTGGAGATAAGACCGTGCGC CTTTGGGATATTCTCGACGGCAAGCTTGTCTACACCCTTAGCATTGAGGATGGTGTCACTACTGTGGCCATGTCT CCGGATGGCCGTTACGTAGCCGCGGGCTCGTTGGACAAGAGCGTGCGCGTTTGGGACACTACAACTGGATACCTG GTAGAACGCCTAGAGAGCCCAGATGGCCACAAGGACAGTGTTTACTCGGTCGCGTTTGCACCCAATGGCCGTGAC CTTGTCAGTGGCAGTCTGGACAAGACTATCAAGCTCTGGGAGCTTACCGTTCCCCGGGGCATGCACCCTCACAGT GCCGTCAAGGGCGGCAAGTGTATTCGTACATTCGAGGGCCACAAGGACTTTGTTCTCAGTGTGTGCCTGACACCC GACGGTGCTTGGGTGATGAGTGGTTCCAAGGACCGTGGTGTTCAGTTCTGGGACCCAGTGACTGGAAATGCCCAA ATGATGCTTCAAGGCCACAAGAACTCTGTCATCTCGGTTGCACCCAGTCCTACTGGCAACCTGTTCGCGACCGGC AGTGGAGACATGCGTGCACGAATCTGGAGATACTCGGCGTATACTGGACGATGA |
| Gene | >Pro_DTO377G3_2|g9010.t1 ATGTACAACGCTCATCGCGGGATGGTACCCGCTCCCAACTCCCGTCTGACGGAGTTGTTGGATCAACTGCGCCAG GAGTTTGAGAGCCAGTCGCGAAACACCGGTGAATTCGAGCATCAGTGTATGTTATCTTCTCCTTTCCGACATATT GTTTCCCCTCCCCTATGCTCGGGCTATTCGCGCCTTGAGCTCCTCCCCCCCCNNNNNNNNNNATAACCCTGGTTA TTGTGTATCTGTTTTTTTTTTTATTTCCTTTTGTCTATTTTTTTTCCCACACCACTTTTGCGGGGTTTTTTCGAG CTTTTCTGCCCCCCCCCCCCCCCCCCCTTGTCCAATCATTTCATACAAGCAGCTGCAGCTCATTTCCCCCAATGA CTGCAGCTCCATGGTTTCCGACATTCGCTGAAGTGTTATCTAACTGACAGATCATGCAGTGACCGGACAGCTCCA GGAGATGGAGATGATCCGTCAGAAGGTCTATCAACTGGAACAGGCGCAGATCAAGATCAAGCAAGAGTTCGTCCC TCCTACCTTCTTGAAAGCTTGAATAACCCTTTCTGACATTACATTTTTCCTTTTTAGCTATGAAGCTGAGATCCG AATGCTGCGACACGAACTTGAGTCCCGTGGCGTGCAATCTATCCCTTCCCACATCGGCGGACCCGCGGCGGCTCA TACAGCTCCTTCCCAGGCTCCCCCACCTGCCTTGGGCCACGGCCCCAGCAATCTGTTTGGCGGTATCATGACCAA CCCACCAGGTAGTGGCCCCGGTCTTGCACCTTCCCTTCCCCAGGATCAGCAGCCTCCCCAGCATCCCCTTCAACA GCCTGCTTCGGTCGCTCAGCCTGGCGCGCCGCAACCCCAGCAGAGCTCCTTTGGAGGATATCCGGCTGGCGCTGC TGTGAACGGTATGTCGTTGTGTTTATGAAAGTTGTCGCCCAGTTTGCTGACCTGTTGGATTGTTCATCTCCTAGG CTATGGGCCGCCTCCACCTCCTACTGCATCCCCAGGCCCTGGTAAGGGCCGTGGTCGCGTTCCCCCAGGCCCCGG TACCCCCCAGCAAACGCACATCGCCTACCCGGATCCTCGTGCTTCCCCTCAGATCCCTCGCCCGACTCCTCCGAA CCCCCCTCTCGGCCGCACAGCCGAACGTCCAGGAAATATGCTGGCAAACTGGAACCCCGATGATTTGCCTCCGTC GCAGAAGCGTGAGGGTTCTGATTGGTATGCCGTGTTCAACCCCGAGGTCCAGCGTGTTCTCGATGTGGAACTGGT ACATCACTTGAACCACGACAGCGTCGTTTGCTGTGTGCGCTTTAGCCGTGACGGCAAATACTTGGCTACAGGCTG TAACCGCTCGGCTCAAATCTTCGACGTGACCACCGGTCAAAATGTGGCCACCTTGCAGGATGAAAACGTCGACAA GGACGGCGACTTATACATTCGCAGCGTTTGCTTCAGTCCGGATGGCAAATATCTTGCGACTGGTGCTGAAGATAA GCAGATTCGGGTAAGTCTTGAGATTATATGGAACCAGCTATGTAGGAAGATTACTGACTGAATGCGATTGGCTCT AGGTTTGGGATATCAACCAGCGCACCATCAAACATATCTTCAGTGGACACGAGCAGGACATCTACTCTTTGGACT TTGCTGGCAACGGTCGATTCATCGCCTCTGGCAGTGGAGATAAGACCGTGCGCCTTTGGGATATTCTCGACGGCA AGCTTGTCTACACCCTTAGCATTGAGGATGGTGTCACTACTGTGGCCATGTCTCCGGATGGCCGTTACGTAGCCG CGGGCTCGTTGGACAAGAGCGTGCGCGTTTGGGACACTACAACTGGATACCTGGTAGAACGCCTAGAGAGCCCAG ATGGCCACAAGGACAGTGTTTACTCGGTCGCGTTTGCACCCAATGGCCGTGACCTTGTCAGTGGCAGTCTGGACA AGACTATCAAGCTCTGGGAGCTTACCGTTCCCCGGGGCATGCACCCTCACAGTGCCGTCAAGGGCGGCAAGTGTA TTCGTACATTCGAGGGCCACAAGGTTAGATCTGAGATTACTTGAGCGAGATAGGCAGAAGCTAACCTTTTGACTA CAATATAGGACTTTGTTCTCAGTGTGTGCCTGACACCCGACGGTGCTTGGGTGATGAGTGGTTCCAAGGACCGTG GTGTTCAGTTCTGGGACCCAGTGACTGGAAATGCCCAAATGATGCTTCAAGGCCACAAGAACTCTGGTGAGTTTC ATACAATCCTAGCTTGCATTATCATCTCTGACTCTCTAACTCCGAATAGTCATCTCGGTTGCACCCAGTCCTACT GGCAACCTGTTCGCGACCGGCAGTGGAGACATGCGTGCACGAATCTGGAGGTGAGTTGTCCCGAGTGTGTTTCAG GATCGTAAGCTGACTTGTTTTCTAGATACTCGGCGTATACTGGACGATGA |