© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9007.t1 |
| Gene name | |
| Location | scaffold_40:57191..58777 |
| Strand | + |
| Gene length (bp) | 1586 |
| Transcript length (bp) | 1446 |
| Coding sequence length (bp) | 1446 |
| Protein length (aa) | 482 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00026 | Asp | Eukaryotic aspartyl protease | 3.9E-70 | 66 | 395 |
| PF14543 | TAXi_N | Xylanase inhibitor N-terminal | 2.6E-11 | 66 | 226 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 237.42 | 141.40 | 333.44 |
| 5d_25C | Five days - 25 degrees Celsius | 131.80 | 80.37 | 183.22 |
| 7d_25C | Seven days - 25 degrees Celsius | 66.19 | 39.81 | 92.58 |
| 10d_25C | Ten days - 25 degrees Celsius | 45.39 | 26.77 | 64.01 |
| 7d_15C | Seven days - 15 degrees Celsius | 203.05 | 119.32 | 286.77 |
| 7d_30C | Seven days - 30 degrees Celsius | 65.29 | 38.82 | 91.76 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.003625 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.577913 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.000700 | yes |
| 5d_25C | 7d_15C | 0.041414 | yes |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.969974 | no |
| 7d_25C | 10d_25C | 0.089066 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.105124 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9007.t1 MKNAWVLLVTGLALPVWGLTLHRRDNPAVVQMDIQRKDILDPVARDQARRKRSTVSQALDNEETLYFCNITLGTP EQSVRLVLDTGSSDLWCNTPNSTLCAASKDACAESGTYNSSSSSSYSFVNSDFNITYADGSGAAGDYVTDTLTIG GTTIKDFQFGLGFTSGSSEGVLGIGYTTNEVQVGRNGDSAYANLPKAMVSKGVIQSNAYSLWLNDLDASTGSILF GGVNTKKYHGTLQTVPVQKVNGQYSEFIIALTGLSLTNSSGKNTYSSSALPAGVLLDSGSSLTYLPDALVQDIYN DLSVSYESDSGIGYVECSMADKNITLGYTFSSPTISVEIKEMIIDVGDLYFRNGKRACVFGIVPAGTSTAVLGDT FLRSAYVVYDLANNEISLANTNFNTTENDVLEIGTGTDSVPGATAVSNPVTTASVGGTAARIGAPQGETGLSGTS SVTGNMAIPMATAMPKHMAVGLVGVGALLAF* |
| Coding | >Pro_DTO377G3_2|g9007.t1 ATGAAAAATGCTTGGGTCTTATTGGTCACCGGCCTGGCGCTGCCAGTCTGGGGTTTAACCCTCCATCGAAGAGAT AACCCCGCCGTGGTGCAAATGGATATTCAACGAAAGGATATTCTCGACCCCGTCGCTAGAGATCAAGCAAGGAGG AAACGTTCGACCGTCAGTCAGGCATTGGACAATGAGGAAACTTTATACTTCTGTAATATTACCCTGGGTACCCCG GAGCAGAGTGTACGCCTGGTTCTCGACACTGGAAGTAGTGATTTGTGGTGCAATACGCCGAATTCGACTCTCTGT GCAGCCAGCAAAGACGCCTGCGCTGAATCTGGTACTTACAACTCGAGCTCTTCCTCTTCATATTCATTCGTGAAC TCGGACTTCAATATCACCTATGCCGATGGATCCGGCGCCGCCGGAGACTATGTCACCGACACCCTTACCATTGGA GGCACAACTATTAAAGACTTCCAGTTTGGCCTTGGGTTTACCTCTGGCTCTTCGGAGGGTGTGCTGGGTATAGGA TATACTACGAATGAAGTTCAGGTTGGCAGAAATGGAGACTCGGCTTATGCCAACCTGCCCAAGGCAATGGTCAGC AAAGGAGTAATCCAATCAAATGCCTACAGTCTCTGGCTGAACGATCTGGATGCGAGTACAGGCTCGATTTTGTTT GGTGGAGTCAACACTAAGAAATACCACGGCACCCTGCAAACAGTTCCCGTCCAGAAGGTCAACGGACAGTATTCG GAGTTCATCATTGCGCTCACTGGACTTTCCCTCACCAATTCATCCGGCAAAAATACCTATTCTTCCAGTGCCCTT CCTGCGGGCGTGTTGCTGGATTCGGGAAGCTCTCTTACATACCTTCCGGACGCCCTGGTTCAGGATATCTACAAT GATCTCAGTGTCTCCTACGAGTCGGACAGTGGCATTGGCTATGTTGAATGCAGCATGGCAGATAAGAACATCACC CTCGGTTACACATTCTCATCCCCGACGATCAGTGTGGAAATCAAAGAGATGATCATCGATGTTGGCGATCTCTAT TTCCGGAACGGCAAACGGGCCTGCGTTTTCGGTATTGTTCCTGCGGGGACCAGCACGGCAGTCCTGGGAGATACC TTCCTTCGCAGCGCATATGTGGTATACGATCTCGCCAATAATGAGATCTCCCTCGCCAACACCAACTTCAACACC ACCGAGAATGATGTTTTGGAAATCGGGACTGGCACTGATTCCGTCCCTGGTGCAACTGCAGTATCGAACCCAGTG ACTACCGCGTCGGTTGGTGGCACCGCTGCTCGAATCGGAGCACCGCAGGGAGAGACCGGACTTTCCGGCACCTCC TCTGTCACTGGGAATATGGCCATTCCTATGGCGACCGCTATGCCGAAACACATGGCTGTCGGCCTTGTCGGCGTG GGAGCTCTTCTGGCTTTCTAA |
| Transcript | >Pro_DTO377G3_2|g9007.t1 ATGAAAAATGCTTGGGTCTTATTGGTCACCGGCCTGGCGCTGCCAGTCTGGGGTTTAACCCTCCATCGAAGAGAT AACCCCGCCGTGGTGCAAATGGATATTCAACGAAAGGATATTCTCGACCCCGTCGCTAGAGATCAAGCAAGGAGG AAACGTTCGACCGTCAGTCAGGCATTGGACAATGAGGAAACTTTATACTTCTGTAATATTACCCTGGGTACCCCG GAGCAGAGTGTACGCCTGGTTCTCGACACTGGAAGTAGTGATTTGTGGTGCAATACGCCGAATTCGACTCTCTGT GCAGCCAGCAAAGACGCCTGCGCTGAATCTGGTACTTACAACTCGAGCTCTTCCTCTTCATATTCATTCGTGAAC TCGGACTTCAATATCACCTATGCCGATGGATCCGGCGCCGCCGGAGACTATGTCACCGACACCCTTACCATTGGA GGCACAACTATTAAAGACTTCCAGTTTGGCCTTGGGTTTACCTCTGGCTCTTCGGAGGGTGTGCTGGGTATAGGA TATACTACGAATGAAGTTCAGGTTGGCAGAAATGGAGACTCGGCTTATGCCAACCTGCCCAAGGCAATGGTCAGC AAAGGAGTAATCCAATCAAATGCCTACAGTCTCTGGCTGAACGATCTGGATGCGAGTACAGGCTCGATTTTGTTT GGTGGAGTCAACACTAAGAAATACCACGGCACCCTGCAAACAGTTCCCGTCCAGAAGGTCAACGGACAGTATTCG GAGTTCATCATTGCGCTCACTGGACTTTCCCTCACCAATTCATCCGGCAAAAATACCTATTCTTCCAGTGCCCTT CCTGCGGGCGTGTTGCTGGATTCGGGAAGCTCTCTTACATACCTTCCGGACGCCCTGGTTCAGGATATCTACAAT GATCTCAGTGTCTCCTACGAGTCGGACAGTGGCATTGGCTATGTTGAATGCAGCATGGCAGATAAGAACATCACC CTCGGTTACACATTCTCATCCCCGACGATCAGTGTGGAAATCAAAGAGATGATCATCGATGTTGGCGATCTCTAT TTCCGGAACGGCAAACGGGCCTGCGTTTTCGGTATTGTTCCTGCGGGGACCAGCACGGCAGTCCTGGGAGATACC TTCCTTCGCAGCGCATATGTGGTATACGATCTCGCCAATAATGAGATCTCCCTCGCCAACACCAACTTCAACACC ACCGAGAATGATGTTTTGGAAATCGGGACTGGCACTGATTCCGTCCCTGGTGCAACTGCAGTATCGAACCCAGTG ACTACCGCGTCGGTTGGTGGCACCGCTGCTCGAATCGGAGCACCGCAGGGAGAGACCGGACTTTCCGGCACCTCC TCTGTCACTGGGAATATGGCCATTCCTATGGCGACCGCTATGCCGAAACACATGGCTGTCGGCCTTGTCGGCGTG GGAGCTCTTCTGGCTTTCTAA |
| Gene | >Pro_DTO377G3_2|g9007.t1 ATGAAAAATGCTTGGGTCTTATTGGTCACCGGCCTGGCGCTGCCAGTCTGGGGTTTAACCCTCCATCGAAGAGAT AACCCCGCCGTGGTGCAAATGGATATTCAACGAAAGGATATTCTCGACCCCGTCGCTAGAGATCAAGCAAGGAGG AAACGTTCGACCGTCAGTCAGGCATTGGACAATGAGGTACACATGATATCTATTTATATATCTATTTATTGGTAT ATATAATTCTTACGCAGCTGCTAATGTGTCTGCCTAGGAAACTTTATACTTCTGTAATATTACCCTGGGTACCCC GGAGCAGAGTGTACGCCTGGTTCTCGACACTGGAAGTAGTGATTTGTGGTGCAATACGCCGAATTCGACTCTCTG TGCAGCCAGCAAAGACGCCTGCGCTGAATCTGGTACTTACAACTCGAGCTCTTCCTCTTCATATTCATTCGTGAA CTCGGACTTCAATATCACCTATGCCGATGGATCCGGCGCCGCCGGAGACTATGTCACCGACACCCTTACCATTGG AGGCACAACTATTAAAGACTTCCAGTTTGGCCTTGGGTTTACCTCTGGCTCTTCGGGTGAGTGATTTCTGTCGGA TATAACGCTGATTACCACAGAGCTAACATGGATGTCTGTATACAGAGGGTGTGCTGGGTATAGGATATACTACGA ATGAAGTTCAGGTTGGCAGAAATGGAGACTCGGCTTATGCCAACCTGCCCAAGGCAATGGTCAGCAAAGGAGTAA TCCAATCAAATGCCTACAGTCTCTGGCTGAACGATCTGGATGCGAGTACAGGCTCGATTTTGTTTGGTGGAGTCA ACACTAAGAAATACCACGGCACCCTGCAAACAGTTCCCGTCCAGAAGGTCAACGGACAGTATTCGGAGTTCATCA TTGCGCTCACTGGACTTTCCCTCACCAATTCATCCGGCAAAAATACCTATTCTTCCAGTGCCCTTCCTGCGGGCG TGTTGCTGGATTCGGGAAGCTCTCTTACATACCTTCCGGACGCCCTGGTTCAGGATATCTACAATGATCTCAGTG TCTCCTACGAGTCGGACAGTGGCATTGGCTATGTTGAATGCAGCATGGCAGATAAGAACATCACCCTCGGTTACA CATTCTCATCCCCGACGATCAGTGTGGAAATCAAAGAGATGATCATCGATGTTGGCGATCTCTATTTCCGGAACG GCAAACGGGCCTGCGTTTTCGGTATTGTTCCTGCGGGGACCAGCACGGCAGTCCTGGGAGATACCTTCCTTCGCA GCGCATATGTGGTATACGATCTCGCCAATAATGAGATCTCCCTCGCCAACACCAACTTCAACACCACCGAGAATG ATGTTTTGGAAATCGGGACTGGCACTGATTCCGTCCCTGGTGCAACTGCAGTATCGAACCCAGTGACTACCGCGT CGGTTGGTGGCACCGCTGCTCGAATCGGAGCACCGCAGGGAGAGACCGGACTTTCCGGCACCTCCTCTGTCACTG GGAATATGGCCATTCCTATGGCGACCGCTATGCCGAAACACATGGCTGTCGGCCTTGTCGGCGTGGGAGCTCTTC TGGCTTTCTAA |