Protein ID | Pro_DTO377G3_2|g8998.t1 |
Gene name | |
Location | scaffold_40:37154..40106 |
Strand | + |
Gene length (bp) | 2952 |
Transcript length (bp) | 2580 |
Coding sequence length (bp) | 2580 |
Protein length (aa) | 860 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF19316 | PIGO_PIGG | GPI ethanolamine phosphate transferase membrane region | 4.6E-154 | 433 | 851 |
PF01663 | Phosphodiest | Type I phosphodiesterase / nucleotide pyrophosphatase | 2.1E-07 | 187 | 263 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 27 | 0.5 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 7 | 29 | 22 |
2 | 438 | 460 | 22 |
3 | 467 | 489 | 22 |
4 | 573 | 590 | 17 |
5 | 597 | 619 | 22 |
6 | 644 | 666 | 22 |
7 | 712 | 734 | 22 |
8 | 754 | 776 | 22 |
9 | 796 | 818 | 22 |
10 | 828 | 850 | 22 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 19.33 | 11.08 | 27.57 |
5d_25C | Five days - 25 degrees Celsius | 24.43 | 14.44 | 34.43 |
7d_25C | Seven days - 25 degrees Celsius | 25.13 | 14.95 | 35.32 |
10d_25C | Ten days - 25 degrees Celsius | 31.32 | 18.92 | 43.72 |
7d_15C | Seven days - 15 degrees Celsius | 21.27 | 12.41 | 30.12 |
7d_30C | Seven days - 30 degrees Celsius | 24.49 | 14.49 | 34.49 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 0.370874 | no |
3d_25C | 7d_25C | 0.292891 | no |
3d_25C | 7d_15C | 0.765441 | no |
3d_25C | 7d_30C | 0.364628 | no |
3d_25C | 10d_25C | 0.026091 | yes |
5d_25C | 7d_25C | 0.936115 | no |
5d_25C | 7d_15C | 0.634732 | no |
5d_25C | 7d_30C | 0.995129 | no |
5d_25C | 10d_25C | 0.302605 | no |
7d_25C | 7d_15C | 0.540332 | no |
7d_25C | 7d_30C | 0.940247 | no |
7d_25C | 10d_25C | 0.366914 | no |
7d_15C | 7d_30C | 0.626341 | no |
7d_15C | 10d_25C | 0.082934 | no |
7d_30C | 10d_25C | 0.307873 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g8998.t1 MAGFRSWTTVIANLLVPVGILTFSSGFFPYKPLIPGLATFDETGQNVIVPAAFDKVIFMVVDALRSDFVYSNESG FLFTQSLIRSGAALPFTAYASAPTVTMPRLKAITTGSVPSFLDVILNIAESDTSSTLAYQDTWLAQLKATGGRLV MYGDDTWLKLFPGMFDRADGTTSFFVSDFTEVDHNVTRHVPHELAQDDWSALIMHYLGLDHIGHKAGPKSPFMIP KQHEMDSVVTEIYTAMQQQDHLQSTLFVLCGDHGMNEAGNHGGSSAGETSPALLFISPKFEALGGRRESPVEPSG DMQYYQTVEQADIAPTLAGLLGIPIPLNSLGVFIPEFLEMWDHGSHKLRILYQNAEQLLNTLTTTFPGSTFGPDS PTSCAPGLPSGIEGAQCAWARVQQLLSGRDEADDSYSTAGPDLLQFLRIAQEVMSRTASNYDVSRLILGLLITGI AGLLVLPATYKECTRHGSSGMFLTLMIITCGMMMFASSYVEEEQQFWYWICSGWIVYLHMKSQSSAKPLSHKRSG LLLYWSDKCIILVLAITQRLLRRWNQTGQKFAAEPDIARTFFARHPEIFWGLFILAYVDAGRHLLGSIPIPGLLR LGVLAPSALAFTFKLHFVTSESPELLDGTFISQIMKEWPYSLSLVLHARLVFYGLAVVVLLSLFAGKRSRVPRVP YDTIHEALHIFLMTQSRATNVPLFLIFRIQAGILSSMNLTGIEVTITTLIFQYMTFFAFGGSNAISSVDLASGYN GVDSYSVVLVGVLTFASNWAGPIWWASQSHRLRPKSPVGQDPSALLTFHVAVSLVSVMAACTALRTHLFIWTVFS PKYLYSMAWATANHVGVNLLGEVIFSRSRSRHSS* |
Coding | >Pro_DTO377G3_2|g8998.t1 ATGGCGGGCTTCCGCAGTTGGACGACAGTCATTGCCAATTTGCTGGTGCCCGTGGGCATACTCACCTTCTCTTCA GGGTTCTTCCCTTATAAACCGTTGATCCCTGGATTAGCGACTTTTGATGAAACCGGCCAGAATGTCATAGTGCCT GCGGCTTTTGATAAAGTTATCTTCATGGTTGTTGATGCGCTGAGGAGCGACTTTGTATATTCGAACGAGTCGGGT TTCTTGTTTACACAGAGCTTGATCCGGTCCGGTGCTGCATTGCCATTCACTGCCTATGCAAGCGCTCCAACTGTC ACAATGCCTCGATTAAAAGCTATCACAACTGGTTCAGTTCCATCTTTTCTAGATGTTATTCTCAATATCGCAGAA TCGGATACCTCGTCAACACTGGCATACCAGGACACCTGGTTGGCACAATTGAAGGCTACAGGAGGACGGCTTGTG ATGTATGGGGATGATACCTGGCTCAAGCTCTTCCCGGGAATGTTTGACCGAGCTGATGGAACTACAAGCTTCTTC GTGTCGGACTTCACGGAAGTAGACCATAATGTGACTCGACACGTTCCTCACGAGCTTGCCCAGGATGACTGGTCT GCTCTGATAATGCATTACCTAGGTCTCGATCACATAGGACATAAGGCTGGCCCCAAAAGTCCATTCATGATACCG AAACAGCACGAGATGGACTCTGTGGTGACTGAAATCTATACCGCAATGCAGCAACAAGATCATCTTCAATCCACA CTTTTCGTGTTGTGCGGAGATCATGGCATGAACGAGGCTGGAAACCATGGCGGGTCATCTGCTGGAGAAACATCC CCCGCGTTACTTTTCATTTCACCCAAGTTTGAAGCCTTGGGTGGCCGAAGAGAAAGCCCAGTGGAACCGTCGGGT GATATGCAGTACTACCAAACGGTTGAGCAGGCGGACATTGCTCCGACCTTGGCGGGGCTTCTTGGTATCCCAATT CCTTTAAACAGTCTTGGGGTATTCATCCCAGAATTTTTAGAGATGTGGGATCATGGTTCTCATAAACTTCGAATC TTATATCAAAATGCTGAGCAGCTGCTGAACACGTTGACAACAACATTCCCTGGATCTACGTTTGGCCCCGATAGT CCTACATCCTGTGCTCCAGGACTTCCATCAGGTATTGAGGGAGCTCAATGTGCGTGGGCTCGAGTCCAGCAACTT CTCTCAGGTAGGGATGAAGCAGATGATTCTTACTCTACAGCTGGCCCCGATTTGCTGCAATTTTTAAGGATTGCA CAGGAAGTTATGAGTCGTACTGCCAGTAACTACGATGTCTCCAGACTCATTCTGGGCTTGTTGATCACGGGGATT GCAGGCCTGCTTGTCCTTCCGGCCACATACAAGGAATGCACACGTCACGGATCTTCCGGGATGTTTTTGACGCTT ATGATCATCACCTGTGGGATGATGATGTTTGCTAGTAGCTATGTGGAAGAAGAGCAGCAGTTCTGGTATTGGATC TGCTCGGGGTGGATTGTCTACCTGCACATGAAATCGCAATCGTCTGCAAAGCCGCTCTCACACAAACGCTCTGGA TTATTATTATATTGGTCTGACAAATGTATCATTCTTGTGCTCGCCATCACCCAGCGGCTCTTGCGACGATGGAAC CAAACTGGTCAGAAATTCGCGGCCGAGCCTGATATTGCTCGCACATTCTTTGCACGCCACCCGGAAATCTTCTGG GGTCTTTTTATCCTCGCGTACGTGGATGCCGGTCGTCATCTTCTCGGGAGTATACCAATCCCTGGATTATTGAGG CTAGGTGTCTTGGCCCCCTCCGCGTTGGCCTTTACGTTCAAATTGCACTTTGTGACTTCGGAATCGCCCGAACTC CTTGATGGGACATTCATCTCGCAAATCATGAAGGAATGGCCCTACAGTCTATCATTGGTCTTGCATGCCAGGCTC GTGTTTTACGGACTTGCTGTCGTTGTCCTACTATCGCTCTTTGCCGGAAAACGATCAAGAGTCCCCCGAGTACCA TATGATACAATCCATGAAGCTCTGCACATCTTCCTAATGACGCAGTCCCGTGCCACTAACGTCCCCCTGTTCCTA ATTTTCCGAATCCAGGCCGGCATTCTCTCTTCCATGAACCTCACAGGGATTGAGGTGACAATCACAACCTTGATC TTCCAATATATGACGTTCTTCGCGTTTGGCGGATCCAATGCAATCTCCTCTGTAGACCTTGCTAGTGGATATAAC GGTGTTGACAGCTACAGCGTGGTGTTGGTGGGAGTTCTCACCTTTGCGAGCAACTGGGCAGGGCCTATCTGGTGG GCATCACAAAGCCATCGTCTCCGGCCGAAGAGTCCCGTAGGACAAGACCCCTCGGCACTGTTGACATTCCATGTT GCCGTGTCCTTGGTTTCTGTCATGGCCGCCTGTACAGCCCTCCGGACGCATCTTTTCATCTGGACCGTTTTCTCG CCCAAGTATCTCTACAGTATGGCGTGGGCCACTGCCAATCATGTTGGTGTCAATTTATTGGGCGAGGTTATTTTC TCTCGATCGCGATCTCGTCATTCTTCATAA |
Transcript | >Pro_DTO377G3_2|g8998.t1 ATGGCGGGCTTCCGCAGTTGGACGACAGTCATTGCCAATTTGCTGGTGCCCGTGGGCATACTCACCTTCTCTTCA GGGTTCTTCCCTTATAAACCGTTGATCCCTGGATTAGCGACTTTTGATGAAACCGGCCAGAATGTCATAGTGCCT GCGGCTTTTGATAAAGTTATCTTCATGGTTGTTGATGCGCTGAGGAGCGACTTTGTATATTCGAACGAGTCGGGT TTCTTGTTTACACAGAGCTTGATCCGGTCCGGTGCTGCATTGCCATTCACTGCCTATGCAAGCGCTCCAACTGTC ACAATGCCTCGATTAAAAGCTATCACAACTGGTTCAGTTCCATCTTTTCTAGATGTTATTCTCAATATCGCAGAA TCGGATACCTCGTCAACACTGGCATACCAGGACACCTGGTTGGCACAATTGAAGGCTACAGGAGGACGGCTTGTG ATGTATGGGGATGATACCTGGCTCAAGCTCTTCCCGGGAATGTTTGACCGAGCTGATGGAACTACAAGCTTCTTC GTGTCGGACTTCACGGAAGTAGACCATAATGTGACTCGACACGTTCCTCACGAGCTTGCCCAGGATGACTGGTCT GCTCTGATAATGCATTACCTAGGTCTCGATCACATAGGACATAAGGCTGGCCCCAAAAGTCCATTCATGATACCG AAACAGCACGAGATGGACTCTGTGGTGACTGAAATCTATACCGCAATGCAGCAACAAGATCATCTTCAATCCACA CTTTTCGTGTTGTGCGGAGATCATGGCATGAACGAGGCTGGAAACCATGGCGGGTCATCTGCTGGAGAAACATCC CCCGCGTTACTTTTCATTTCACCCAAGTTTGAAGCCTTGGGTGGCCGAAGAGAAAGCCCAGTGGAACCGTCGGGT GATATGCAGTACTACCAAACGGTTGAGCAGGCGGACATTGCTCCGACCTTGGCGGGGCTTCTTGGTATCCCAATT CCTTTAAACAGTCTTGGGGTATTCATCCCAGAATTTTTAGAGATGTGGGATCATGGTTCTCATAAACTTCGAATC TTATATCAAAATGCTGAGCAGCTGCTGAACACGTTGACAACAACATTCCCTGGATCTACGTTTGGCCCCGATAGT CCTACATCCTGTGCTCCAGGACTTCCATCAGGTATTGAGGGAGCTCAATGTGCGTGGGCTCGAGTCCAGCAACTT CTCTCAGGTAGGGATGAAGCAGATGATTCTTACTCTACAGCTGGCCCCGATTTGCTGCAATTTTTAAGGATTGCA CAGGAAGTTATGAGTCGTACTGCCAGTAACTACGATGTCTCCAGACTCATTCTGGGCTTGTTGATCACGGGGATT GCAGGCCTGCTTGTCCTTCCGGCCACATACAAGGAATGCACACGTCACGGATCTTCCGGGATGTTTTTGACGCTT ATGATCATCACCTGTGGGATGATGATGTTTGCTAGTAGCTATGTGGAAGAAGAGCAGCAGTTCTGGTATTGGATC TGCTCGGGGTGGATTGTCTACCTGCACATGAAATCGCAATCGTCTGCAAAGCCGCTCTCACACAAACGCTCTGGA TTATTATTATATTGGTCTGACAAATGTATCATTCTTGTGCTCGCCATCACCCAGCGGCTCTTGCGACGATGGAAC CAAACTGGTCAGAAATTCGCGGCCGAGCCTGATATTGCTCGCACATTCTTTGCACGCCACCCGGAAATCTTCTGG GGTCTTTTTATCCTCGCGTACGTGGATGCCGGTCGTCATCTTCTCGGGAGTATACCAATCCCTGGATTATTGAGG CTAGGTGTCTTGGCCCCCTCCGCGTTGGCCTTTACGTTCAAATTGCACTTTGTGACTTCGGAATCGCCCGAACTC CTTGATGGGACATTCATCTCGCAAATCATGAAGGAATGGCCCTACAGTCTATCATTGGTCTTGCATGCCAGGCTC GTGTTTTACGGACTTGCTGTCGTTGTCCTACTATCGCTCTTTGCCGGAAAACGATCAAGAGTCCCCCGAGTACCA TATGATACAATCCATGAAGCTCTGCACATCTTCCTAATGACGCAGTCCCGTGCCACTAACGTCCCCCTGTTCCTA ATTTTCCGAATCCAGGCCGGCATTCTCTCTTCCATGAACCTCACAGGGATTGAGGTGACAATCACAACCTTGATC TTCCAATATATGACGTTCTTCGCGTTTGGCGGATCCAATGCAATCTCCTCTGTAGACCTTGCTAGTGGATATAAC GGTGTTGACAGCTACAGCGTGGTGTTGGTGGGAGTTCTCACCTTTGCGAGCAACTGGGCAGGGCCTATCTGGTGG GCATCACAAAGCCATCGTCTCCGGCCGAAGAGTCCCGTAGGACAAGACCCCTCGGCACTGTTGACATTCCATGTT GCCGTGTCCTTGGTTTCTGTCATGGCCGCCTGTACAGCCCTCCGGACGCATCTTTTCATCTGGACCGTTTTCTCG CCCAAGTATCTCTACAGTATGGCGTGGGCCACTGCCAATCATGTTGGTGTCAATTTATTGGGCGAGGTTATTTTC TCTCGATCGCGATCTCGTCATTCTTCATAA |
Gene | >Pro_DTO377G3_2|g8998.t1 ATGGCGGGCTTCCGCAGTTGGACGACAGTCATTGCCAATTTGCTGGTGCCCGTGGGCATACTCACCTTCTCTTCA GGGTTCTTCCCTTATAAACCGTTGATCCCTGGATTAGCGACTTTTGATGAAACCGGCCAGAATGTCATAGTGCCT GCGGCTTTTGATAAAGTTATCTTCATGGTTGTTGATGCGCTGAGGAGGTATGATTTGAATAATTCAACTCCGAGC TATATCAGTAACTAACAAGGTGCTCACATATAGCGACTTTGTATATTCGAACGAGTCGGGTTTCTTGTTTACACA GAGGTGGGTGTCGCTTTTGAAATACACCATTTATTCGTTCGAAACAAGTGACTGATTGGATACTAGCTTGATCCG GTCCGGTGCTGCATTGCCATTCACTGCCTATGCAAGCGCTCCAACTGTCACAATGCCTCGATTAAAAGCTATCAC AACTGGTTCAGTTCCATCTTTTCTAGATGTTATTCTCAATATCGCAGAATCGGATACCTCGTCAACACTGGCATA CCAGGACACCTGGTTGGCACAATTGAAGGCTACAGGAGGACGGCTTGTGATGTATGGGGATGATACCTGGCTCAA GCTCTTCCCGGGAATGTTTGACCGAGCTGATGGAACTACAAGCTTCTTCGTGTCGGTCAGTTGTACTTTAGGTGT TTGTGTATCCGCAGTATTAGTATTGAAACTGAGATTCTCCTCGCAGGACTTCACGGAAGTAGACCATAATGTGAC TCGACACGTTCCTCACGAGCTTGCCCAGGATGACTGGTCTGCTCTGATAATGCATTACCTAGGTCTCGATCACAT AGGACATAAGGCTGGCCCCAAAAGGTAAATTCAGCTCCCGATTTCATTATTAGCTGCTCTCTATCCTCTAACTCT CCTAGTCCATTCATGATACCGAAACAGCACGAGATGGACTCTGTGGTGACTGAAATCTATACCGCAATGCAGCAA CAAGATCATCTTCAATCCACACTTTTCGTGTTGTGCGGAGATCATGGCATGAACGAGGCTGGAAACCATGGCGGG TCATCTGCTGGAGAAACATCCCCCGCGTTACTTTTCATTTCACCCAAGTTTGAAGCCTTGGGTGGCCGAAGAGAA AGCCCAGTGGAACCGTCGGGTGATATGCAGTACTACCAAACGGTTGAGCAGGCGGACATTGCTCCGACCTTGGCG GGGCTTCTTGGTATCCCAATTCCTTTAAACAGTCTTGGGGTATTCATCCCAGAATTTTTAGAGATGTGGGATCAT GGTATGTAATCTATTCCTAATGGCGTCCAAGCGAAGAAAGATCCGGAACTGACTCGGGAACAGGTTCTCATAAAC TTCGAATCTTATATCAAAATGCTGAGCAGCTGCTGAACACGTTGACAACAACATTCCCTGGATCTACGTTTGGCC CCGATAGTCCTACATCCTGTGCTCCAGGACTTCCATCAGGTATTGAGGGAGCTCAATGTGCGTGGGCTCGAGTCC AGCAACTTCTCTCAGGTAGGGATGAAGCAGATGATTCTTACTCTACAGCTGGCCCCGATTTGCTGCAATTTTTAA GGATTGCACAGGAAGTTATGAGTCGTACTGCCAGTAACTACGATGTCTCCAGACTCATTCTGGGCTTGTTGATCA CGGGGATTGCAGGCCTGCTTGTCCTTCCGGCCACATACAAGGAATGCACACGTCACGGATCTTCCGGGATGTTTT TGACGCTTATGATCATCACCTGTGGGATGATGATGTTTGCTAGTAGCTATGTGGAAGAAGAGCAGCAGTTCTGGT ATTGGATCTGCTCGGGGTGGATTGTCTACCTGCACATGAAATCGCAATCGTCTGCAAAGCCGCTCTCACACAAAC GCTCTGGATTATTATTATATTGGTCTGACAAATGTATCATTCTTGTGCTCGCCATCACCCAGCGGCTCTTGCGAC GATGGAACCAAACTGGTCAGAAATTCGCGGCCGAGCCTGATATTGCTCGCACATTCTTTGCACGCCACCCGGAAA TCTTCTGGGGTCTTTTTATCCTCGCGTACGTGGATGCCGGTCGTCATCTTCTCGGGAGTATACCAATCCCTGGAT TATTGAGGCTAGGTGTCTTGGCCCCCTCCGCGTTGGCCTTTACGTTCAAATTGCACTTTGTGACTTCGGAATCGC CCGAACTCCTTGATGGGACATTCATCTCGCAAATCATGAAGGAATGGCCCTACAGTCTATCATTGGTCTTGCATG CCAGGCTCGTGTTTTACGGACTTGCTGTCGTTGTCCTACTATCGCTCTTTGCCGGAAAACGATCAAGAGTCCCCC GAGGTAAGCCCACACATGCGCTAGATTGCCTCTGAGCTTGGAGGTCATTACTGACCAGACTCTGTAGTACCATAT GATACAATCCATGAAGCTCTGCACATCTTCCTAATGACGCAGTCCCGTGCCACTAACGTCCCCCTGTTCCTAATT TTCCGAATCCAGGCCGGCATTCTCTCTTCCATGAACCTCACAGGGATTGAGGTGACAATCACAACCTTGATCTTC CAATATATGACGTTCTTCGCGTTTGGCGGATCCAATGCAATCTCCTCTGTAGACCTTGCTAGTGGATATAACGGT GTTGACAGCTACAGCGTGGTGTTGGTGGGAGTTCTCACCTTTGCGAGCAACTGGGCAGGGCCTATCTGGTGGGCA TCACAAAGCCATCGTCTCCGGCCGAAGAGTCCCGTAGGACAAGACCCCTCGGCACTGTTGACATTCCATGTTGCC GTGTCCTTGGTTTCTGTCATGGCCGCCTGTACAGCCCTCCGGACGCATCTTTTCATCTGGACCGTTTTCTCGCCC AAGTATCTCTACAGTATGGCGTGGGCCACTGCCAATCATGTTGGTGTCAATTTATTGGGCGAGGTTATTTTCTCT CGATCGCGATCTCGTCATTCTTCATAA |