© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8991.t1 |
| Gene name | |
| Location | scaffold_40:26618..27820 |
| Strand | + |
| Gene length (bp) | 1202 |
| Transcript length (bp) | 1086 |
| Coding sequence length (bp) | 1086 |
| Protein length (aa) | 362 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.4E-15 | 15 | 85 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.5E-15 | 103 | 172 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 87.79 | 53.18 | 122.39 |
| 5d_25C | Five days - 25 degrees Celsius | 88.23 | 53.48 | 122.97 |
| 7d_25C | Seven days - 25 degrees Celsius | 97.33 | 59.16 | 135.50 |
| 10d_25C | Ten days - 25 degrees Celsius | 93.67 | 57.04 | 130.29 |
| 7d_15C | Seven days - 15 degrees Celsius | 76.71 | 46.03 | 107.39 |
| 7d_30C | Seven days - 30 degrees Celsius | 83.90 | 50.65 | 117.14 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.988856 | no |
| 3d_25C | 7d_25C | 0.718289 | no |
| 3d_25C | 7d_15C | 0.619639 | no |
| 3d_25C | 7d_30C | 0.889137 | no |
| 3d_25C | 10d_25C | 0.836928 | no |
| 5d_25C | 7d_25C | 0.735987 | no |
| 5d_25C | 7d_15C | 0.605656 | no |
| 5d_25C | 7d_30C | 0.876241 | no |
| 5d_25C | 10d_25C | 0.851716 | no |
| 7d_25C | 7d_15C | 0.329390 | no |
| 7d_25C | 7d_30C | 0.585476 | no |
| 7d_25C | 10d_25C | 0.910799 | no |
| 7d_15C | 7d_30C | 0.764019 | no |
| 7d_15C | 10d_25C | 0.434782 | no |
| 7d_30C | 10d_25C | 0.698745 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8991.t1 MSNARHWEQDKEATVYIGNLDERVSDSLVWELMLQVGRIVNVHLPKDRVTQLHQGYGFVEFISEEDAEYASKIMN GIRLHSKPIRVNKASADKQKTVEIGAELFVGNLDPMVAEQVLFDTFSRFGNLVNPPKIARDDNNLSKGYGFVSFA DFESSDAAISNMNGQYLMNKQVSVQYAYKKDGKGERHGDEAERMLAAQARKHNVQPPTQQPQQPSQFPGAAPGVS ATPAMSNGDSSRPLITAQSQTPDLGMNRGIPPAMPYQSAPPPMPYQTVPPPNRHVPPPVPSINTPPPGLPARPPP SQAGYGGPQTFLPPGFNGAGQPPFVPQAAAPPGFGPPGFGPPAGAPSLPPGFQQPGYAGSR* |
| Coding | >Pro_DTO377G3_2|g8991.t1 ATGTCTAACGCAAGACATTGGGAACAAGATAAAGAGGCAACCGTGTACATCGGAAACCTTGATGAACGGGTTTCG GACAGCCTTGTATGGGAGCTGATGCTACAGGTTGGGCGCATCGTCAACGTCCACCTGCCCAAAGACCGGGTCACG CAGCTACACCAGGGGTATGGATTTGTTGAGTTCATCAGCGAGGAAGATGCCGAATATGCATCGAAGATCATGAAT GGAATCCGTCTCCATAGCAAGCCTATTCGCGTTAACAAAGCGTCAGCCGATAAACAAAAGACCGTGGAAATCGGC GCAGAGCTGTTTGTGGGTAACCTGGATCCTATGGTTGCCGAGCAGGTTCTGTTTGATACGTTCAGCCGGTTTGGC AATCTTGTCAATCCGCCCAAAATTGCTCGTGATGACAACAATCTCTCTAAGGGATACGGATTTGTTTCTTTTGCC GATTTCGAATCCTCGGACGCGGCCATCTCCAACATGAATGGCCAGTACCTGATGAACAAACAGGTTTCGGTACAG TATGCGTACAAGAAAGATGGGAAAGGCGAGAGACATGGGGATGAAGCGGAGCGAATGCTCGCAGCCCAGGCTCGC AAACACAACGTACAGCCACCGACTCAACAACCTCAGCAACCTTCGCAGTTCCCTGGCGCTGCGCCGGGCGTATCA GCAACACCTGCCATGTCGAACGGCGATAGCTCTCGCCCATTGATTACGGCTCAGTCACAAACACCCGATCTAGGA ATGAACCGGGGTATCCCGCCAGCTATGCCCTACCAGAGTGCACCCCCTCCAATGCCCTATCAGACCGTTCCCCCT CCAAACCGACATGTTCCACCTCCCGTCCCTTCAATCAATACCCCACCTCCCGGGCTCCCAGCTCGACCTCCGCCT TCCCAAGCTGGCTACGGTGGTCCACAGACGTTTCTACCACCTGGATTCAATGGTGCAGGTCAACCGCCCTTCGTC CCACAAGCTGCAGCTCCCCCTGGGTTTGGACCACCTGGGTTTGGACCTCCAGCGGGAGCCCCTTCATTGCCACCG GGCTTCCAACAGCCCGGATATGCAGGCAGTCGATGA |
| Transcript | >Pro_DTO377G3_2|g8991.t1 ATGTCTAACGCAAGACATTGGGAACAAGATAAAGAGGCAACCGTGTACATCGGAAACCTTGATGAACGGGTTTCG GACAGCCTTGTATGGGAGCTGATGCTACAGGTTGGGCGCATCGTCAACGTCCACCTGCCCAAAGACCGGGTCACG CAGCTACACCAGGGGTATGGATTTGTTGAGTTCATCAGCGAGGAAGATGCCGAATATGCATCGAAGATCATGAAT GGAATCCGTCTCCATAGCAAGCCTATTCGCGTTAACAAAGCGTCAGCCGATAAACAAAAGACCGTGGAAATCGGC GCAGAGCTGTTTGTGGGTAACCTGGATCCTATGGTTGCCGAGCAGGTTCTGTTTGATACGTTCAGCCGGTTTGGC AATCTTGTCAATCCGCCCAAAATTGCTCGTGATGACAACAATCTCTCTAAGGGATACGGATTTGTTTCTTTTGCC GATTTCGAATCCTCGGACGCGGCCATCTCCAACATGAATGGCCAGTACCTGATGAACAAACAGGTTTCGGTACAG TATGCGTACAAGAAAGATGGGAAAGGCGAGAGACATGGGGATGAAGCGGAGCGAATGCTCGCAGCCCAGGCTCGC AAACACAACGTACAGCCACCGACTCAACAACCTCAGCAACCTTCGCAGTTCCCTGGCGCTGCGCCGGGCGTATCA GCAACACCTGCCATGTCGAACGGCGATAGCTCTCGCCCATTGATTACGGCTCAGTCACAAACACCCGATCTAGGA ATGAACCGGGGTATCCCGCCAGCTATGCCCTACCAGAGTGCACCCCCTCCAATGCCCTATCAGACCGTTCCCCCT CCAAACCGACATGTTCCACCTCCCGTCCCTTCAATCAATACCCCACCTCCCGGGCTCCCAGCTCGACCTCCGCCT TCCCAAGCTGGCTACGGTGGTCCACAGACGTTTCTACCACCTGGATTCAATGGTGCAGGTCAACCGCCCTTCGTC CCACAAGCTGCAGCTCCCCCTGGGTTTGGACCACCTGGGTTTGGACCTCCAGCGGGAGCCCCTTCATTGCCACCG GGCTTCCAACAGCCCGGATATGCAGGCAGTCGATGA |
| Gene | >Pro_DTO377G3_2|g8991.t1 ATGTCTAACGCAAGACATTGGTAAGACCTTCTTTCCTCCCCACAGGGACCTGATGCTAACTTACCCCAGGGAACA AGATAAAGAGGCAACCGTGTACATCGGAAACCTTGATGAACGGGTTTCGGACAGCCTTGTATGGGAGCTGATGCT ACAGGTTGGGCGCATCGTCAACGTCCACCTGCCCAAAGACCGGGTCACGCAGCTACACCAGGGGTATGGATTTGT TGAGTTCATCAGCGAGGAAGATGCCGAATATGCATCGAAGATCATGAATGGAATCCGTCTCCATAGCAAGCCTAT TCGCGTTAACAAAGCGTCAGCCGATAAACAAAAGACCGTGGAAATCGGCGCAGAGCTGTTTGTGGGTAACCTGGA TCCTATGGTTGCCGAGCAGGTTCTGTTTGATACGTTCAGCCGGTTTGGCAATCTTGTCAATCCGCCCAAAGTGAG ATCTCCCCCAATACGAACAAGATGGAAATTTTTAACAGTCTCTTTTTCATATTACTTTACAGATTGCTCGTGATG ACAACAATCTCTCTAAGGGATACGGATTTGTTTCTTTTGCCGATTTCGAATCCTCGGACGCGGCCATCTCCAACA TGAATGGCCAGTACCTGATGAACAAACAGGTTTCGGTACAGTATGCGTACAAGAAAGATGGGAAAGGCGAGAGAC ATGGGGATGAAGCGGAGCGAATGCTCGCAGCCCAGGCTCGCAAACACAACGTACAGCCACCGACTCAACAACCTC AGCAACCTTCGCAGTTCCCTGGCGCTGCGCCGGGCGTATCAGCAACACCTGCCATGTCGAACGGCGATAGCTCTC GCCCATTGATTACGGCTCAGTCACAAACACCCGATCTAGGAATGAACCGGGGTATCCCGCCAGCTATGCCCTACC AGAGTGCACCCCCTCCAATGCCCTATCAGACCGTTCCCCCTCCAAACCGACATGTTCCACCTCCCGTCCCTTCAA TCAATACCCCACCTCCCGGGCTCCCAGCTCGACCTCCGCCTTCCCAAGCTGGCTACGGTGGTCCACAGACGTTTC TACCACCTGGATTCAATGGTGCAGGTCAACCGCCCTTCGTCCCACAAGCTGCAGCTCCCCCTGGGTTTGGACCAC CTGGGTTTGGACCTCCAGCGGGAGCCCCTTCATTGCCACCGGGCTTCCAACAGCCCGGATATGCAGGCAGTCGAT GA |