© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8988.t1 |
| Gene name | |
| Location | scaffold_39:182623..183592 |
| Strand | - |
| Gene length (bp) | 969 |
| Transcript length (bp) | 969 |
| Coding sequence length (bp) | 969 |
| Protein length (aa) | 323 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00704 | Glyco_hydro_18 | Glycosyl hydrolases family 18 | 1.6E-12 | 33 | 225 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 21.09 | 9.58 | 32.60 |
| 5d_25C | Five days - 25 degrees Celsius | 19.48 | 8.75 | 30.21 |
| 7d_25C | Seven days - 25 degrees Celsius | 22.71 | 10.66 | 34.75 |
| 10d_25C | Ten days - 25 degrees Celsius | 33.88 | 17.56 | 50.20 |
| 7d_15C | Seven days - 15 degrees Celsius | 54.60 | 30.90 | 78.30 |
| 7d_30C | Seven days - 30 degrees Celsius | 18.59 | 8.20 | 28.97 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.857620 | no |
| 3d_25C | 7d_25C | 0.864683 | no |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.757264 | no |
| 3d_25C | 10d_25C | 0.095564 | no |
| 5d_25C | 7d_25C | 0.704449 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.921946 | no |
| 5d_25C | 10d_25C | 0.056162 | no |
| 7d_25C | 7d_15C | 0.001278 | yes |
| 7d_25C | 7d_30C | 0.591689 | no |
| 7d_25C | 10d_25C | 0.176458 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.059343 | no |
| 7d_30C | 10d_25C | 0.035014 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8988.t1 MPPIRGGLGERPRVILYHQTLIPGGGQYVSMLPLLENNTGITHVILAAFHLNAAPGDITLNDDPPDNPKFDPLWA EVPVVQRQGVKVMGMLGGAAPGTFTRLDGSRMEFEEFYYPFLTMIRRHGLDGIDLDVEEAMSLQGIVRLIDRLKA DLGDAFIITLAPVAVALLGIGNLSGFDYRELEQARASQISWYNTQFYNGWGLAEDPRMYATMVAQGWSPRRIVYG LLTNPGNGSQGYVSQERMGPVLAMLIEQFPNFGGVMGWEYYNALPGGMAEPWQWAAEMTLTMGMKDLVVAARQLM SAGPMASSLNALFQDMLDQGRQ* |
| Coding | >Pro_DTO377G3_2|g8988.t1 ATGCCACCGATCCGAGGTGGACTCGGCGAGCGTCCGCGGGTGATCTTGTACCACCAAACACTCATCCCAGGCGGG GGTCAGTATGTCTCCATGCTCCCGCTCCTCGAAAACAACACCGGAATAACACATGTTATTCTCGCCGCTTTTCAC TTGAACGCTGCACCAGGGGACATCACTCTCAACGATGATCCACCAGACAACCCCAAATTCGACCCCCTATGGGCC GAAGTGCCAGTCGTGCAGCGGCAAGGCGTGAAAGTGATGGGCATGTTAGGCGGGGCCGCCCCGGGCACCTTCACG CGGCTTGACGGCAGCCGGATGGAATTTGAAGAATTTTATTATCCTTTCCTGACCATGATTCGCCGCCATGGCCTT GATGGAATTGATCTCGATGTGGAAGAGGCCATGTCTTTGCAAGGCATCGTCCGACTCATCGACCGGCTCAAGGCT GACCTGGGCGACGCATTCATCATTACCCTGGCCCCTGTGGCAGTTGCATTACTTGGTATTGGGAACTTATCAGGG TTCGACTACCGTGAACTCGAGCAGGCTCGTGCTTCTCAGATCAGCTGGTACAATACCCAGTTCTACAATGGCTGG GGTCTTGCTGAGGATCCACGGATGTACGCTACTATGGTTGCCCAGGGGTGGTCTCCGCGACGGATTGTATACGGC CTGTTGACAAACCCGGGTAATGGATCGCAGGGTTATGTGTCTCAGGAGAGGATGGGACCTGTTCTGGCAATGTTG ATTGAGCAGTTTCCCAACTTTGGTGGCGTTATGGGTTGGGAGTATTACAATGCTCTGCCTGGGGGCATGGCGGAA CCGTGGCAGTGGGCTGCGGAGATGACATTGACCATGGGTATGAAAGATCTTGTCGTGGCAGCTCGCCAGTTAATG TCGGCAGGGCCGATGGCGAGCAGTCTCAATGCTTTGTTCCAAGATATGCTAGATCAGGGACGCCAATGA |
| Transcript | >Pro_DTO377G3_2|g8988.t1 ATGCCACCGATCCGAGGTGGACTCGGCGAGCGTCCGCGGGTGATCTTGTACCACCAAACACTCATCCCAGGCGGG GGTCAGTATGTCTCCATGCTCCCGCTCCTCGAAAACAACACCGGAATAACACATGTTATTCTCGCCGCTTTTCAC TTGAACGCTGCACCAGGGGACATCACTCTCAACGATGATCCACCAGACAACCCCAAATTCGACCCCCTATGGGCC GAAGTGCCAGTCGTGCAGCGGCAAGGCGTGAAAGTGATGGGCATGTTAGGCGGGGCCGCCCCGGGCACCTTCACG CGGCTTGACGGCAGCCGGATGGAATTTGAAGAATTTTATTATCCTTTCCTGACCATGATTCGCCGCCATGGCCTT GATGGAATTGATCTCGATGTGGAAGAGGCCATGTCTTTGCAAGGCATCGTCCGACTCATCGACCGGCTCAAGGCT GACCTGGGCGACGCATTCATCATTACCCTGGCCCCTGTGGCAGTTGCATTACTTGGTATTGGGAACTTATCAGGG TTCGACTACCGTGAACTCGAGCAGGCTCGTGCTTCTCAGATCAGCTGGTACAATACCCAGTTCTACAATGGCTGG GGTCTTGCTGAGGATCCACGGATGTACGCTACTATGGTTGCCCAGGGGTGGTCTCCGCGACGGATTGTATACGGC CTGTTGACAAACCCGGGTAATGGATCGCAGGGTTATGTGTCTCAGGAGAGGATGGGACCTGTTCTGGCAATGTTG ATTGAGCAGTTTCCCAACTTTGGTGGCGTTATGGGTTGGGAGTATTACAATGCTCTGCCTGGGGGCATGGCGGAA CCGTGGCAGTGGGCTGCGGAGATGACATTGACCATGGGTATGAAAGATCTTGTCGTGGCAGCTCGCCAGTTAATG TCGGCAGGGCCGATGGCGAGCAGTCTCAATGCTTTGTTCCAAGATATGCTAGATCAGGGACGCCAATGA |
| Gene | >Pro_DTO377G3_2|g8988.t1 ATGCCACCGATCCGAGGTGGACTCGGCGAGCGTCCGCGGGTGATCTTGTACCACCAAACACTCATCCCAGGCGGG GGTCAGTATGTCTCCATGCTCCCGCTCCTCGAAAACAACACCGGAATAACACATGTTATTCTCGCCGCTTTTCAC TTGAACGCTGCACCAGGGGACATCACTCTCAACGATGATCCACCAGACAACCCCAAATTCGACCCCCTATGGGCC GAAGTGCCAGTCGTGCAGCGGCAAGGCGTGAAAGTGATGGGCATGTTAGGCGGGGCCGCCCCGGGCACCTTCACG CGGCTTGACGGCAGCCGGATGGAATTTGAAGAATTTTATTATCCTTTCCTGACCATGATTCGCCGCCATGGCCTT GATGGAATTGATCTCGATGTGGAAGAGGCCATGTCTTTGCAAGGCATCGTCCGACTCATCGACCGGCTCAAGGCT GACCTGGGCGACGCATTCATCATTACCCTGGCCCCTGTGGCAGTTGCATTACTTGGTATTGGGAACTTATCAGGG TTCGACTACCGTGAACTCGAGCAGGCTCGTGCTTCTCAGATCAGCTGGTACAATACCCAGTTCTACAATGGCTGG GGTCTTGCTGAGGATCCACGGATGTACGCTACTATGGTTGCCCAGGGGTGGTCTCCGCGACGGATTGTATACGGC CTGTTGACAAACCCGGGTAATGGATCGCAGGGTTATGTGTCTCAGGAGAGGATGGGACCTGTTCTGGCAATGTTG ATTGAGCAGTTTCCCAACTTTGGTGGCGTTATGGGTTGGGAGTATTACAATGCTCTGCCTGGGGGCATGGCGGAA CCGTGGCAGTGGGCTGCGGAGATGACATTGACCATGGGTATGAAAGATCTTGTCGTGGCAGCTCGCCAGTTAATG TCGGCAGGGCCGATGGCGAGCAGTCTCAATGCTTTGTTCCAAGATATGCTAGATCAGGGACGCCAATGA |