© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8970.t1 |
| Gene name | |
| Location | scaffold_39:135881..138089 |
| Strand | + |
| Gene length (bp) | 2208 |
| Transcript length (bp) | 1425 |
| Coding sequence length (bp) | 1425 |
| Protein length (aa) | 475 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 3.0E-13 | 34 | 325 |
| PF05978 | UNC-93 | Ion channel regulatory protein UNC-93 | 3.1E-12 | 63 | 274 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 36 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 57 | 79 | 22 |
| 3 | 84 | 106 | 22 |
| 4 | 111 | 133 | 22 |
| 5 | 154 | 176 | 22 |
| 6 | 186 | 208 | 22 |
| 7 | 244 | 263 | 19 |
| 8 | 273 | 295 | 22 |
| 9 | 308 | 327 | 19 |
| 10 | 409 | 431 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 4.84 | 1.46 | 8.21 |
| 5d_25C | Five days - 25 degrees Celsius | 18.67 | 9.14 | 28.20 |
| 7d_25C | Seven days - 25 degrees Celsius | 17.76 | 8.56 | 26.96 |
| 10d_25C | Ten days - 25 degrees Celsius | 40.51 | 23.26 | 57.76 |
| 7d_15C | Seven days - 15 degrees Celsius | 17.51 | 8.25 | 26.77 |
| 7d_30C | Seven days - 30 degrees Celsius | 25.04 | 13.01 | 37.08 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.906952 | no |
| 5d_25C | 7d_15C | 0.876731 | no |
| 5d_25C | 7d_30C | 0.314955 | no |
| 5d_25C | 10d_25C | 0.001278 | yes |
| 7d_25C | 7d_15C | 0.976285 | no |
| 7d_25C | 7d_30C | 0.230547 | no |
| 7d_25C | 10d_25C | 0.002297 | yes |
| 7d_15C | 7d_30C | 0.205339 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.044784 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8970.t1 MAERGSISASSGTPFEKRVWYRGTLFNACIIGAVGFTAPGLWNAMNALGAGGAQEPFLINAANALVFGLMGILCL FGGPIANRIGLRWTLMLGAVGYPLYSAALYTNNRFGNVWFVLVGSVFCGLSAGLFWASEGAVALGYPEPAKRGRY MNIWLWFRTGGPILGGAIVLGLNHAADAHAKGKVGSETYLIFVALQCTAVPIAFFLTSPDKVQRTDGSKVRIILQ DSWRDEMKELWKVCQRREILLLLPVFWAAYFNMYTGNFKTYYFGVRARALIGFVTYFATLLASTIISRFLDYRGL SIRNRIKYSFFYVIVVHIAAWVYCWVIQEKYTRNPPTLDWADKGFVEGFFVILLWEFAQQSLQNFLYYLLSTMTD NISELSRLSGILRGQESFSQAVSYGLNSKKWHGGRVPLIVNTILLVLAVWPTWLVIRVHVPIEHSKETSELPQAQ DEEQNNVSLSDKETFHVAEAVASK* |
| Coding | >Pro_DTO377G3_2|g8970.t1 ATGGCCGAACGAGGTTCTATCTCGGCATCGTCCGGTACGCCATTTGAAAAGCGAGTATGGTATCGCGGAACACTC TTCAATGCCTGTATTATCGGGGCCGTCGGATTCACAGCCCCGGGCTTGTGGAATGCCATGAATGCTTTGGGTGCT GGTGGCGCGCAGGAGCCTTTCTTGATTAATGCCGCCAATGCGCTTGTTTTCGGTCTTATGGGCATTTTGTGTCTG TTCGGTGGCCCAATTGCCAACCGGATTGGCCTGAGATGGACTCTGATGCTTGGTGCTGTGGGATATCCGCTGTAT TCTGCCGCCTTATACACAAATAACCGTTTTGGAAATGTATGGTTTGTGCTGGTTGGATCAGTATTTTGTGGTTTA TCCGCTGGTCTTTTCTGGGCTTCTGAGGGTGCTGTGGCACTAGGTTATCCCGAGCCTGCAAAGCGAGGCCGATAC ATGAACATCTGGCTTTGGTTCCGTACAGGTGGCCCTATACTGGGAGGTGCTATTGTCCTTGGTCTCAACCATGCT GCCGATGCCCATGCAAAAGGAAAAGTTGGATCTGAGACGTATCTCATCTTCGTCGCCCTCCAATGTACTGCCGTT CCTATAGCCTTCTTCCTCACGTCACCTGACAAGGTCCAACGCACCGACGGAAGCAAAGTCAGGATTATCCTGCAG GACTCGTGGCGTGATGAAATGAAAGAGCTCTGGAAGGTCTGCCAGCGGAGAGAGATTCTTTTGCTATTGCCTGTT TTCTGGGCCGCATACTTCAATATGTATACCGGAAATTTCAAAACGTACTACTTTGGCGTGCGCGCTCGCGCGCTG ATTGGATTCGTCACCTACTTCGCCACTCTTCTTGCATCAACGATCATTAGTAGATTCCTGGACTACCGTGGCCTT TCTATCAGAAACAGAATCAAGTACAGCTTTTTCTACGTAATTGTCGTCCACATCGCTGCCTGGGTCTACTGCTGG GTTATCCAAGAGAAGTACACTAGGAACCCACCAACACTTGATTGGGCCGACAAAGGTTTCGTTGAAGGATTCTTC GTTATCCTGCTCTGGGAATTCGCTCAGCAATCGCTGCAGAACTTCCTCTACTACCTTCTATCCACCATGACCGAC AATATCTCCGAACTCTCCCGCTTGTCCGGTATCCTCCGTGGCCAAGAGAGCTTTTCACAGGCTGTTTCTTACGGC CTCAACTCGAAGAAATGGCATGGTGGAAGAGTGCCACTTATCGTTAACACTATCCTTCTCGTTCTTGCGGTGTGG CCTACTTGGCTCGTTATCAGGGTCCACGTTCCCATCGAGCATTCCAAGGAGACTTCTGAGTTGCCCCAAGCCCAA GACGAGGAGCAGAACAACGTTAGTCTCTCTGACAAGGAGACATTTCATGTTGCCGAAGCAGTTGCTTCGAAATAA |
| Transcript | >Pro_DTO377G3_2|g8970.t1 ATGGCCGAACGAGGTTCTATCTCGGCATCGTCCGGTACGCCATTTGAAAAGCGAGTATGGTATCGCGGAACACTC TTCAATGCCTGTATTATCGGGGCCGTCGGATTCACAGCCCCGGGCTTGTGGAATGCCATGAATGCTTTGGGTGCT GGTGGCGCGCAGGAGCCTTTCTTGATTAATGCCGCCAATGCGCTTGTTTTCGGTCTTATGGGCATTTTGTGTCTG TTCGGTGGCCCAATTGCCAACCGGATTGGCCTGAGATGGACTCTGATGCTTGGTGCTGTGGGATATCCGCTGTAT TCTGCCGCCTTATACACAAATAACCGTTTTGGAAATGTATGGTTTGTGCTGGTTGGATCAGTATTTTGTGGTTTA TCCGCTGGTCTTTTCTGGGCTTCTGAGGGTGCTGTGGCACTAGGTTATCCCGAGCCTGCAAAGCGAGGCCGATAC ATGAACATCTGGCTTTGGTTCCGTACAGGTGGCCCTATACTGGGAGGTGCTATTGTCCTTGGTCTCAACCATGCT GCCGATGCCCATGCAAAAGGAAAAGTTGGATCTGAGACGTATCTCATCTTCGTCGCCCTCCAATGTACTGCCGTT CCTATAGCCTTCTTCCTCACGTCACCTGACAAGGTCCAACGCACCGACGGAAGCAAAGTCAGGATTATCCTGCAG GACTCGTGGCGTGATGAAATGAAAGAGCTCTGGAAGGTCTGCCAGCGGAGAGAGATTCTTTTGCTATTGCCTGTT TTCTGGGCCGCATACTTCAATATGTATACCGGAAATTTCAAAACGTACTACTTTGGCGTGCGCGCTCGCGCGCTG ATTGGATTCGTCACCTACTTCGCCACTCTTCTTGCATCAACGATCATTAGTAGATTCCTGGACTACCGTGGCCTT TCTATCAGAAACAGAATCAAGTACAGCTTTTTCTACGTAATTGTCGTCCACATCGCTGCCTGGGTCTACTGCTGG GTTATCCAAGAGAAGTACACTAGGAACCCACCAACACTTGATTGGGCCGACAAAGGTTTCGTTGAAGGATTCTTC GTTATCCTGCTCTGGGAATTCGCTCAGCAATCGCTGCAGAACTTCCTCTACTACCTTCTATCCACCATGACCGAC AATATCTCCGAACTCTCCCGCTTGTCCGGTATCCTCCGTGGCCAAGAGAGCTTTTCACAGGCTGTTTCTTACGGC CTCAACTCGAAGAAATGGCATGGTGGAAGAGTGCCACTTATCGTTAACACTATCCTTCTCGTTCTTGCGGTGTGG CCTACTTGGCTCGTTATCAGGGTCCACGTTCCCATCGAGCATTCCAAGGAGACTTCTGAGTTGCCCCAAGCCCAA GACGAGGAGCAGAACAACGTTAGTCTCTCTGACAAGGAGACATTTCATGTTGCCGAAGCAGTTGCTTCGAAATAA |
| Gene | >Pro_DTO377G3_2|g8970.t1 ATGGCCGAACGAGGTTCTATCTCGGCATCGTCCGGTACGCCATTTGAAAAGCGAGTATGGTATCGCGGAACACTC TTCAATGCCTGTATTATCGGGGCCGTCGGATTCACAGCCCCGGGCTTGTGGAATGCCATGAATGCTTTGGGTGCT GGTGGCGCGCAGGAGCCTTTCTTGATTAATGCCGCCAATGCGCTTGTTTTCGGTCTTAGTATGTGATATGTTGCT GTAATCGCATTGGATTTGAATCGGGCTTCTCGCTAACTTGATTTGCTTGCTAGTGGGCATTTTGTGTCTGTTCGG TGGCCCAATTGCCAACCGGATTGGCCTGAGATGGACTCTGATGCTTGGTGCTGTGGGATATCCGCTGTATTCGTA TGTATCATGAGAACAAGGTGTGAAATTGTGTTATTTGAAGACTGACTTTATATACAGTGCCGCCTTATACACAAA TAACCGTTTTGTGAGTTCTTCGTCAACTTGTACAACCCAGGGAAGAAGACTAATTTCCATATAGGGAAATGTATG GTTTGTGCTGGTTGGATCAGTATTTTGTGGTTTATCGTGAGTATCCTATACTGATCAAATAAATAATATCGTTGA CTAACATTTATAGCGCTGGTCTTTTCTGGGCTTCTGAGGGTGCTGTGGCACTAGGTTATCCCGAGCCTGCAAAGC GAGGCCGATACATGAAGTGAGATATTTCAAAAAGCCCTACAGTGACAAAAAGACTGACTTAAAAAGCATCTGGCT TTGGTTCCGTACAGGTGGCCCTATACTGGGAGGTGCTATTGTCCTTGGTCTCAACCAGTATGTTAATTCCAATTT GAATTCACATCACGGACATATTTACTGACGACTGGAAAGTGCTGCCGATGCCCATGCAAAAGGAAAAGTTGGATC TGGTAGGTCTATTCAAGCTAGATTGAACAAAACGATTGCTAACACACGACAGAGACGTATCTCATCTTCGTCGCC CTCCAATGTACTGCCGTTCCTATAGCCTTCTTCCTCACGTCACCTGACAAGGTCCAACGCACCGACGGAAGCAAA GTCAGGATTATCCTGCAGGACTCGTGGCGTGATGAAATGAAAGAGCTCTGGAAGGTCTGCCAGCGGAGAGAGGTA TGTTTAAGATCATTGGTTCCATCGTGCCTATGTGCTATATGTGACTAACATTCCTAGATTCTTTTGCTATTGCCT GTTTTCTGGGCCGCATACTTCAATATGTATACCGGAAGTATGTATCGTGTGTTTCCTCTTATATGCAATTGCTGA TAACTTGATCCAGATTTCAAAACGTACTACTTTGGCGTGCGCGCTCGCGCGCTGATTGGATTCGTCAGTATGTTT ACACACTCACAAGAGTTAGACACCTTTTGCATCAGTGCTAACATGGAACAAAGCCTACTTCGCCACTCTTCTTGC ATCAACGATCATTAGTAGATTCCTGGACTACCGTGGCCTTTCTATCAGAAACAGAATCAAGTACAGGTACAAAAC CACACCATCCAAAATTGAACTTAGAAGCAAAACTAACAAGCCACAGCTTTTTCTACGTAATTGTCGTCCACATCG CTGCCTGGGTCTACTGCTGGGTTATCCAAGAGAAGTACACTAGGAACCCACCAACACTTGATTGGGCCGACAAAG GTTTCGTTGAAGGATTCTTCGTTATCCTGCTCTGGGGTGAGTCTTATAGATTGATCAACATCCCACACAGTGCTA ACCTATTTCATCAGAATTCGCTCAGCAATCGCTGCAGAACTTCCTCTACTACCTTCTATCCACCATGACCGACAA TATCTCCGAACTCTGTAAGTCGAAAATTCAAACCGATCGTCCTATCTCCAGATTACTAATACCATATAGCCCGCT TGTCCGGTATCCTCCGTGGCCAAGAGAGCTTTTCACAGGCTGTTTCTTACGGCCTCAACTCGAAGAAATGGCATG GTGGAAGAGTGCCACTTATCGTTAACACTATCCTTCTCGGTAAGTGATACAAATTGACTGATTATAAAGAAGTAG TGCTAACTTTTATTTACAGTTCTTGCGGTGTGGCCTACTTGGCTCGTTATCAGGGTCCACGTTCCCATCGAGCAT TCCAAGGAGACTTCTGAGTTGCCCCAAGCCCAAGACGAGGAGCAGAACAACGTTAGTCTCTCTGACAAGGAGACA TTTCATGTTGCCGAAGCAGTTGCTTCGAAATAA |