Penicillium roqueforti LCP96 04111

General Properties

Protein ID	Pro_DTO377G3_2\|g8964.t1
Gene name
Location	scaffold_39:119204..120818
Strand	-
Gene length (bp)	1614
Transcript length (bp)	1494
Coding sequence length (bp)	1494
Protein length (aa)	498

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF06870	RNA_pol_I_A49	A49-like RNA polymerase I associated factor	4.9E-61	84	489

GO

GO Term	Description	Terminal node
GO:0006351	transcription, DNA-templated	Yes
GO:0003677	DNA binding	Yes
GO:0006725	cellular aromatic compound metabolic process	No
GO:0005488	binding	No
GO:0008152	metabolic process	No
GO:0019438	aromatic compound biosynthetic process	No
GO:0003676	nucleic acid binding	No
GO:0071704	organic substance metabolic process	No
GO:1901360	organic cyclic compound metabolic process	No
GO:0008150	biological_process	No
GO:0009058	biosynthetic process	No
GO:0034654	nucleobase-containing compound biosynthetic process	No
GO:0032774	RNA biosynthetic process	No
GO:0016070	RNA metabolic process	No
GO:0006139	nucleobase-containing compound metabolic process	No
GO:0044271	cellular nitrogen compound biosynthetic process	No
GO:0043170	macromolecule metabolic process	No
GO:0034641	cellular nitrogen compound metabolic process	No
GO:0044238	primary metabolic process	No
GO:0046483	heterocycle metabolic process	No
GO:0003674	molecular_function	No
GO:1901362	organic cyclic compound biosynthetic process	No
GO:0006807	nitrogen compound metabolic process	No
GO:0044249	cellular biosynthetic process	No
GO:0097159	organic cyclic compound binding	No
GO:0018130	heterocycle biosynthetic process	No
GO:0097659	nucleic acid-templated transcription	No
GO:1901363	heterocyclic compound binding	No
GO:0090304	nucleic acid metabolic process	No
GO:0044237	cellular metabolic process	No
GO:0009987	cellular process	No
GO:0009059	macromolecule biosynthetic process	No
GO:1901576	organic substance biosynthetic process	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 26	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	15.02	7.04	23.00
5d_25C	Five days - 25 degrees Celsius	11.64	4.99	18.28
7d_25C	Seven days - 25 degrees Celsius	11.41	4.96	17.86
10d_25C	Ten days - 25 degrees Celsius	7.16	2.52	11.81
7d_15C	Seven days - 15 degrees Celsius	11.39	4.91	17.86
7d_30C	Seven days - 30 degrees Celsius	12.86	5.69	20.03

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.473829	no
3d_25C	7d_25C	0.448854	no
3d_25C	7d_15C	0.440632	no
3d_25C	7d_30C	0.696925	no
3d_25C	10d_25C	0.021163	yes
5d_25C	7d_25C	0.969891	no
5d_25C	7d_15C	0.965448	no
5d_25C	7d_30C	0.817463	no
5d_25C	10d_25C	0.158964	no
7d_25C	7d_15C	0.996497	no
7d_25C	7d_30C	0.782165	no
7d_25C	10d_25C	0.196488	no
7d_15C	7d_30C	0.778160	no
7d_15C	10d_25C	0.195514	no
7d_30C	10d_25C	0.084587	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g8964.t1 MPSNKTDHKRKRSSGNDRPSKKPALQQLPPLAASVVEDKSELAPVIVDTPGLQSSKSLHWNPYIKNRANVSKSAA STRNPGIVSSEILLQSSDHPKLDFVGREGTGDDTDSQVKHYVAVIDPERKTWKVVEVRRATLRGAVRSRKPEDDS DEEMNTMRAQRTALTNTFGTKQSRKAVQSMAENAQLSNAPTGAVPQAGAALISSLPANTASGLAKALAMQAEVQA AKPLPTPNLAVSHPSDVYTIETLVPGSHSTLSQLNGVDEWKSQVEAGLGVTTVSRYVSNRVGAVVNSENITHLQV LRFIQLLIEFGRCLKNAGANAKGGGPGSKRLPPREDLRRILSNTTGSVTKPKPGAAAPDAASADLLPESVIDAVR RRFAPSGGYVSKNDFTLLQTTICALSLHIPPQPARDGGSSSLGGNAPNELATDPSDLRDDLRLDPNTIHQYFREL GCRIDKPRETEFAKWNIKGGRAEAHARRVARLRVPVEFPKVSRGGRR*
Coding	>Pro_DTO377G3_2\|g8964.t1 ATGCCGTCCAATAAAACAGATCACAAGCGGAAGCGTTCATCAGGCAATGATCGCCCAAGCAAAAAGCCCGCGCTG CAGCAGCTGCCCCCGCTGGCCGCCAGCGTTGTTGAAGATAAGAGCGAGCTGGCACCGGTAATTGTCGACACACCT GGTCTTCAAAGCTCGAAATCCCTCCACTGGAATCCATATATCAAAAACCGCGCCAATGTCTCCAAGTCTGCGGCA TCGACTCGGAACCCGGGCATTGTCTCTTCAGAGATACTGCTCCAGTCCTCAGACCACCCTAAGTTGGACTTTGTC GGCCGTGAGGGCACAGGAGATGATACCGACTCCCAAGTGAAGCACTATGTCGCAGTTATAGACCCAGAGCGCAAG ACATGGAAAGTCGTGGAGGTGCGGCGAGCGACACTGCGAGGAGCAGTGAGAAGCCGCAAGCCCGAGGACGACTCA GATGAAGAGATGAACACTATGCGCGCCCAACGCACAGCTCTAACAAACACCTTCGGAACCAAACAATCCCGCAAG GCCGTGCAATCCATGGCCGAGAACGCCCAGCTCTCCAACGCCCCCACCGGCGCCGTCCCCCAAGCCGGCGCAGCC CTCATCTCCTCGCTGCCCGCAAACACAGCCTCCGGCCTCGCCAAGGCCCTCGCCATGCAAGCCGAAGTGCAAGCC GCCAAGCCCCTCCCAACCCCGAACCTAGCCGTCTCGCACCCCTCCGACGTCTACACAATTGAGACACTCGTTCCA GGCAGCCACTCAACCCTCAGCCAACTAAACGGCGTAGACGAGTGGAAGTCACAAGTGGAAGCCGGTCTTGGCGTG ACAACCGTCTCACGCTACGTCTCGAACCGCGTCGGTGCAGTCGTCAACTCCGAAAACATAACTCACCTCCAAGTC CTCCGCTTCATCCAGCTGCTAATCGAGTTCGGACGCTGTCTCAAAAACGCAGGCGCGAACGCCAAGGGCGGCGGC CCAGGCAGCAAGCGTCTCCCGCCCCGCGAAGACCTCCGCCGCATCCTGTCAAACACCACGGGGTCCGTCACGAAG CCCAAGCCCGGCGCCGCTGCACCGGACGCCGCTTCCGCAGACCTGCTTCCGGAGTCCGTGATCGATGCCGTGCGT CGCCGCTTCGCGCCCAGCGGCGGCTACGTCTCCAAGAACGACTTCACCCTCCTGCAAACTACCATCTGTGCGCTC TCGCTGCATATCCCGCCCCAGCCGGCACGCGACGGTGGCTCCAGCTCACTCGGTGGTAATGCGCCCAACGAGCTT GCGACTGATCCTTCGGATCTGCGTGATGATCTGCGTCTCGATCCGAATACTATTCACCAGTACTTCCGTGAACTC GGTTGTCGCATTGATAAGCCGCGTGAGACGGAGTTCGCCAAGTGGAATATTAAGGGTGGACGTGCGGAGGCGCAT GCGCGTCGTGTTGCTCGCTTGCGCGTGCCTGTTGAGTTCCCTAAGGTTAGCCGTGGTGGTCGGAGGTAG
Transcript	>Pro_DTO377G3_2\|g8964.t1 ATGCCGTCCAATAAAACAGATCACAAGCGGAAGCGTTCATCAGGCAATGATCGCCCAAGCAAAAAGCCCGCGCTG CAGCAGCTGCCCCCGCTGGCCGCCAGCGTTGTTGAAGATAAGAGCGAGCTGGCACCGGTAATTGTCGACACACCT GGTCTTCAAAGCTCGAAATCCCTCCACTGGAATCCATATATCAAAAACCGCGCCAATGTCTCCAAGTCTGCGGCA TCGACTCGGAACCCGGGCATTGTCTCTTCAGAGATACTGCTCCAGTCCTCAGACCACCCTAAGTTGGACTTTGTC GGCCGTGAGGGCACAGGAGATGATACCGACTCCCAAGTGAAGCACTATGTCGCAGTTATAGACCCAGAGCGCAAG ACATGGAAAGTCGTGGAGGTGCGGCGAGCGACACTGCGAGGAGCAGTGAGAAGCCGCAAGCCCGAGGACGACTCA GATGAAGAGATGAACACTATGCGCGCCCAACGCACAGCTCTAACAAACACCTTCGGAACCAAACAATCCCGCAAG GCCGTGCAATCCATGGCCGAGAACGCCCAGCTCTCCAACGCCCCCACCGGCGCCGTCCCCCAAGCCGGCGCAGCC CTCATCTCCTCGCTGCCCGCAAACACAGCCTCCGGCCTCGCCAAGGCCCTCGCCATGCAAGCCGAAGTGCAAGCC GCCAAGCCCCTCCCAACCCCGAACCTAGCCGTCTCGCACCCCTCCGACGTCTACACAATTGAGACACTCGTTCCA GGCAGCCACTCAACCCTCAGCCAACTAAACGGCGTAGACGAGTGGAAGTCACAAGTGGAAGCCGGTCTTGGCGTG ACAACCGTCTCACGCTACGTCTCGAACCGCGTCGGTGCAGTCGTCAACTCCGAAAACATAACTCACCTCCAAGTC CTCCGCTTCATCCAGCTGCTAATCGAGTTCGGACGCTGTCTCAAAAACGCAGGCGCGAACGCCAAGGGCGGCGGC CCAGGCAGCAAGCGTCTCCCGCCCCGCGAAGACCTCCGCCGCATCCTGTCAAACACCACGGGGTCCGTCACGAAG CCCAAGCCCGGCGCCGCTGCACCGGACGCCGCTTCCGCAGACCTGCTTCCGGAGTCCGTGATCGATGCCGTGCGT CGCCGCTTCGCGCCCAGCGGCGGCTACGTCTCCAAGAACGACTTCACCCTCCTGCAAACTACCATCTGTGCGCTC TCGCTGCATATCCCGCCCCAGCCGGCACGCGACGGTGGCTCCAGCTCACTCGGTGGTAATGCGCCCAACGAGCTT GCGACTGATCCTTCGGATCTGCGTGATGATCTGCGTCTCGATCCGAATACTATTCACCAGTACTTCCGTGAACTC GGTTGTCGCATTGATAAGCCGCGTGAGACGGAGTTCGCCAAGTGGAATATTAAGGGTGGACGTGCGGAGGCGCAT GCGCGTCGTGTTGCTCGCTTGCGCGTGCCTGTTGAGTTCCCTAAGGTTAGCCGTGGTGGTCGGAGGTAG
Gene	>Pro_DTO377G3_2\|g8964.t1 ATGCCGTCCAATAAAACAGATCACAAGCGGAAGCGTTCATCAGGCAATGATCGCCCAAGCAAAAAGCCCGCGCTG CAGCAGCTGCCCCCGCTGGCCGCCAGCGTTGTTGAAGATAAGAGCGAGCTGGCACCGGTAATTGGTGAGTCGAAG GCTTTCATCCAGGCTGTAAACCATCGCTAATCGAATTCTTGCGTTACAGTCGACACACCTGGTCTTCAAAGCTCG AAATCCCTCCACTGGAATCCATATATCAAAAACCGCGCCAATGTCTCCAAGTCTGCGGCATCGACTCGGAACCCG GGCATTGTCTCTTCAGAGATACTGCTCCAGTCCTCAGACCACCCTAAGTTGGACTTTGTCGGCCGTGAGGGCACA GGAGATGATACCGACTCCCAAGTGAAGCACTATGTCGCAGTTATAGACCCAGAGCGCAAGACATGGAAAGTCGTG GAGGTGCGGCGAGCGACACTGCGAGGAGCAGTGAGAAGCCGCAAGCCCGAGGACGACTCAGATGAAGAGATGGTA TGCCCTTCGATCCGCAAGTCCGTACATCAACGGCATCCAACTAACAACCAGCACCAGAACACTATGCGCGCCCAA CGCACAGCTCTAACAAACACCTTCGGAACCAAACAATCCCGCAAGGCCGTGCAATCCATGGCCGAGAACGCCCAG CTCTCCAACGCCCCCACCGGCGCCGTCCCCCAAGCCGGCGCAGCCCTCATCTCCTCGCTGCCCGCAAACACAGCC TCCGGCCTCGCCAAGGCCCTCGCCATGCAAGCCGAAGTGCAAGCCGCCAAGCCCCTCCCAACCCCGAACCTAGCC GTCTCGCACCCCTCCGACGTCTACACAATTGAGACACTCGTTCCAGGCAGCCACTCAACCCTCAGCCAACTAAAC GGCGTAGACGAGTGGAAGTCACAAGTGGAAGCCGGTCTTGGCGTGACAACCGTCTCACGCTACGTCTCGAACCGC GTCGGTGCAGTCGTCAACTCCGAAAACATAACTCACCTCCAAGTCCTCCGCTTCATCCAGCTGCTAATCGAGTTC GGACGCTGTCTCAAAAACGCAGGCGCGAACGCCAAGGGCGGCGGCCCAGGCAGCAAGCGTCTCCCGCCCCGCGAA GACCTCCGCCGCATCCTGTCAAACACCACGGGGTCCGTCACGAAGCCCAAGCCCGGCGCCGCTGCACCGGACGCC GCTTCCGCAGACCTGCTTCCGGAGTCCGTGATCGATGCCGTGCGTCGCCGCTTCGCGCCCAGCGGCGGCTACGTC TCCAAGAACGACTTCACCCTCCTGCAAACTACCATCTGTGCGCTCTCGCTGCATATCCCGCCCCAGCCGGCACGC GACGGTGGCTCCAGCTCACTCGGTGGTAATGCGCCCAACGAGCTTGCGACTGATCCTTCGGATCTGCGTGATGAT CTGCGTCTCGATCCGAATACTATTCACCAGTACTTCCGTGAACTCGGTTGTCGCATTGATAAGCCGCGTGAGACG GAGTTCGCCAAGTGGAATATTAAGGGTGGACGTGCGGAGGCGCATGCGCGTCGTGTTGCTCGCTTGCGCGTGCCT GTTGAGTTCCCTAAGGTTAGCCGTGGTGGTCGGAGGTAG

Fungal Genomics

General Properties

PFAM Domains

GO

SignalP

Transmembrane Domains

Transcription Factor Class

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Sequences