© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8959.t1 |
| Gene name | |
| Location | scaffold_39:99210..101296 |
| Strand | + |
| Gene length (bp) | 2086 |
| Transcript length (bp) | 1539 |
| Coding sequence length (bp) | 1539 |
| Protein length (aa) | 513 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 8.0E-64 | 57 | 472 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 33 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 53 | 75 | 22 |
| 2 | 148 | 170 | 22 |
| 3 | 177 | 196 | 19 |
| 4 | 216 | 238 | 22 |
| 5 | 259 | 281 | 22 |
| 6 | 312 | 334 | 22 |
| 7 | 369 | 391 | 22 |
| 8 | 395 | 417 | 22 |
| 9 | 430 | 452 | 22 |
| 10 | 467 | 486 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 4.09 | 1.12 | 7.06 |
| 5d_25C | Five days - 25 degrees Celsius | 3.85 | 1.07 | 6.63 |
| 7d_25C | Seven days - 25 degrees Celsius | 3.90 | 1.09 | 6.71 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.65 | 0.22 | 3.08 |
| 7d_15C | Seven days - 15 degrees Celsius | 2.60 | 0.53 | 4.68 |
| 7d_30C | Seven days - 30 degrees Celsius | 2.66 | 0.58 | 4.75 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.924656 | no |
| 3d_25C | 7d_25C | 0.940628 | no |
| 3d_25C | 7d_15C | 0.334475 | no |
| 3d_25C | 7d_30C | 0.373531 | no |
| 3d_25C | 10d_25C | 0.048648 | yes |
| 5d_25C | 7d_25C | 0.984986 | no |
| 5d_25C | 7d_15C | 0.410423 | no |
| 5d_25C | 7d_30C | 0.449070 | no |
| 5d_25C | 10d_25C | 0.065131 | no |
| 7d_25C | 7d_15C | 0.391764 | no |
| 7d_25C | 7d_30C | 0.435401 | no |
| 7d_25C | 10d_25C | 0.057587 | no |
| 7d_15C | 7d_30C | 0.975900 | no |
| 7d_15C | 10d_25C | 0.384047 | no |
| 7d_30C | 10d_25C | 0.365931 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8959.t1 MDDTMEKVLSHKVKRRQSTATGHDSMPQAGDTELLATLGYKQELRRHYSTIEIFAVAFRWFVASCFIFLVALAMA DMASAMPTAGGLYFWTHYYSSEKWKNPLSFLVGYSNTIGLIGGVCSIDYGFANMLLSVISLARDGEWSATRPVIY GTYAATVVAHGFIAIFFARIMPRIQSACIFLNIALVVATVIALPIGKAKNSPPVNPGTYVFGEVQNFTTWPAGWA FMLAWLSPIWTIGAFDSCVHMSEEATHAARAVPLGIISSAGLCGILGFVSLAVIAASMDTDIEGILNSKYGQPMT QIYYDALGKSGALGFMVVVMIVQFFMGLSIVLAASRQSWAFSRDGALPLSSFFRKVSQRKFTRYQPVRMVCGIVL ASIIIGLLCLIDEAAANALFSLAVAGNDLAWLTPILARLLWGGERFVPGEFYTGAYLSKPIGWVAVIYMMYVIVL TMIPTEGPNPSPQNMNYTVVINGSLWLGALLYYYLHARKTYKGPQTTVSPEDEGKALEQDSK* |
| Coding | >Pro_DTO377G3_2|g8959.t1 ATGGATGATACAATGGAGAAAGTGTTATCCCATAAGGTCAAGAGGCGTCAGTCGACGGCTACAGGTCATGACTCG ATGCCCCAGGCTGGAGATACCGAGTTGCTAGCAACACTCGGGTACAAGCAGGAATTGCGGCGTCATTATTCGACG ATTGAGATTTTTGCTGTCGCTTTTAGATGGTTCGTTGCGAGTTGCTTCATCTTCCTTGTGGCCTTGGCAATGGCC GACATGGCATCCGCAATGCCCACCGCAGGCGGACTCTATTTCTGGACACACTACTACTCATCCGAGAAATGGAAG AACCCGCTCAGTTTCCTCGTCGGATACAGCAATACCATCGGCCTGATCGGAGGCGTATGCTCGATCGACTACGGT TTCGCCAACATGCTCCTCTCAGTGATCTCTCTAGCCCGCGACGGCGAATGGTCCGCCACACGACCAGTCATATAC GGCACATACGCAGCAACCGTCGTCGCACACGGCTTCATCGCTATCTTCTTTGCCCGGATCATGCCGAGGATCCAA TCCGCCTGTATCTTCCTCAACATCGCTCTCGTGGTGGCTACCGTCATCGCCCTGCCCATAGGCAAAGCGAAGAAT AGCCCGCCTGTCAACCCGGGCACGTATGTCTTTGGGGAGGTACAGAATTTCACTACTTGGCCTGCTGGATGGGCG TTCATGCTGGCGTGGCTCTCGCCTATCTGGACTATTGGTGCGTTCGATTCCTGCGTGCATATGAGTGAGGAGGCG ACGCATGCTGCTCGCGCCGTGCCGCTGGGAATTATCTCTTCTGCTGGACTATGTGGTATTCTTGGGTTCGTTTCG CTGGCGGTTATTGCGGCGTCGATGGATACGGATATCGAGGGGATTCTGAATTCGAAGTATGGACAGCCTATGACT CAGATCTACTACGACGCCCTTGGCAAAAGCGGTGCCCTTGGCTTCATGGTCGTGGTAATGATTGTTCAATTCTTC ATGGGACTGAGTATTGTCCTAGCCGCCTCCCGCCAAAGCTGGGCCTTCTCCCGCGACGGCGCCCTCCCCCTATCC TCCTTCTTCCGCAAAGTAAGCCAACGCAAGTTCACACGCTACCAGCCAGTCCGCATGGTCTGCGGCATAGTACTC GCATCGATAATCATCGGCCTCCTCTGCCTAATCGACGAAGCAGCCGCCAACGCCCTCTTCTCGCTCGCCGTAGCC GGCAACGACCTCGCCTGGCTAACGCCCATCCTGGCGCGTCTGCTCTGGGGCGGCGAGCGCTTCGTCCCTGGTGAG TTCTATACAGGCGCTTATCTCAGTAAGCCCATCGGGTGGGTTGCCGTCATCTACATGATGTACGTTATTGTTCTT ACTATGATTCCTACCGAGGGGCCGAATCCGTCGCCTCAAAATATGAATTATACGGTTGTTATCAATGGGAGTCTT TGGCTTGGGGCGTTGCTTTATTATTATCTTCATGCGAGGAAGACGTATAAGGGACCGCAGACTACTGTTAGTCCC GAGGATGAGGGCAAGGCTTTGGAGCAGGACTCGAAATAG |
| Transcript | >Pro_DTO377G3_2|g8959.t1 ATGGATGATACAATGGAGAAAGTGTTATCCCATAAGGTCAAGAGGCGTCAGTCGACGGCTACAGGTCATGACTCG ATGCCCCAGGCTGGAGATACCGAGTTGCTAGCAACACTCGGGTACAAGCAGGAATTGCGGCGTCATTATTCGACG ATTGAGATTTTTGCTGTCGCTTTTAGATGGTTCGTTGCGAGTTGCTTCATCTTCCTTGTGGCCTTGGCAATGGCC GACATGGCATCCGCAATGCCCACCGCAGGCGGACTCTATTTCTGGACACACTACTACTCATCCGAGAAATGGAAG AACCCGCTCAGTTTCCTCGTCGGATACAGCAATACCATCGGCCTGATCGGAGGCGTATGCTCGATCGACTACGGT TTCGCCAACATGCTCCTCTCAGTGATCTCTCTAGCCCGCGACGGCGAATGGTCCGCCACACGACCAGTCATATAC GGCACATACGCAGCAACCGTCGTCGCACACGGCTTCATCGCTATCTTCTTTGCCCGGATCATGCCGAGGATCCAA TCCGCCTGTATCTTCCTCAACATCGCTCTCGTGGTGGCTACCGTCATCGCCCTGCCCATAGGCAAAGCGAAGAAT AGCCCGCCTGTCAACCCGGGCACGTATGTCTTTGGGGAGGTACAGAATTTCACTACTTGGCCTGCTGGATGGGCG TTCATGCTGGCGTGGCTCTCGCCTATCTGGACTATTGGTGCGTTCGATTCCTGCGTGCATATGAGTGAGGAGGCG ACGCATGCTGCTCGCGCCGTGCCGCTGGGAATTATCTCTTCTGCTGGACTATGTGGTATTCTTGGGTTCGTTTCG CTGGCGGTTATTGCGGCGTCGATGGATACGGATATCGAGGGGATTCTGAATTCGAAGTATGGACAGCCTATGACT CAGATCTACTACGACGCCCTTGGCAAAAGCGGTGCCCTTGGCTTCATGGTCGTGGTAATGATTGTTCAATTCTTC ATGGGACTGAGTATTGTCCTAGCCGCCTCCCGCCAAAGCTGGGCCTTCTCCCGCGACGGCGCCCTCCCCCTATCC TCCTTCTTCCGCAAAGTAAGCCAACGCAAGTTCACACGCTACCAGCCAGTCCGCATGGTCTGCGGCATAGTACTC GCATCGATAATCATCGGCCTCCTCTGCCTAATCGACGAAGCAGCCGCCAACGCCCTCTTCTCGCTCGCCGTAGCC GGCAACGACCTCGCCTGGCTAACGCCCATCCTGGCGCGTCTGCTCTGGGGCGGCGAGCGCTTCGTCCCTGGTGAG TTCTATACAGGCGCTTATCTCAGTAAGCCCATCGGGTGGGTTGCCGTCATCTACATGATGTACGTTATTGTTCTT ACTATGATTCCTACCGAGGGGCCGAATCCGTCGCCTCAAAATATGAATTATACGGTTGTTATCAATGGGAGTCTT TGGCTTGGGGCGTTGCTTTATTATTATCTTCATGCGAGGAAGACGTATAAGGGACCGCAGACTACTGTTAGTCCC GAGGATGAGGGCAAGGCTTTGGAGCAGGACTCGAAATAG |
| Gene | >Pro_DTO377G3_2|g8959.t1 ATGGATGATACAATGGAGAAAGTGTTATCCCATAAGGTCAAGAGGCGTCAGTCGACGGCTACAGGTCATGACTCG ATGCCCCAGGCTGGAGATACCGAGTTGCTAGGTGTGTATAATCCCCGGCTTATTGGAAATTGGTGTTACGATATG AGATCTTGTCACTGACGGATCAAACAGCAACACTCGGGTACAAGCAGGAATTGCGGCGTCATTATTCGACGATTG AGATTTTTGCTGTCGCTTTTAGTATTATGGGGCTTTTGCCTTCCATTGCATCTTCGTTGGCGTTTTCAATGCCCG CTGGGCCTGTGGGAATGGTTTGGGTAATATACTCCTCAGCCTGAAATTGGTTCGCATTGTGACTGACATAATGGA TAGGGTATGCATCTATTCTTTCAGGAGTATCGTCTGGCAATTGCTAACAGACTCCTTGGTTAGGATGGTTCGTTG CGAGTTGCTTCATCTTCCTTGTGGCCTTGGCAATGGTATGATTTACTCCTTATATAACCCTAAAAACCACAGAAC TAATAACCACCAGGCCGACATGGCATCCGCAATGCCCACCGCAGGCGGACTCTATTTCTGGACACACTACTACTC ATCCGAGAAATGGAAGAACCCGCTCAGTTTCCTCGTCGGATACAGCAATACCATCGGCCTGATCGGAGGCGTATG CTCGATCGACTGTGAGTCAGATGCAATCTCAAACAAAAAGCCCATAATTAACACATCCTCATCAGACGGTTTCGC CAACATGCTCCTCTCAGTGATCTCTCTAGCCCGCGACGGCGAATGGTCCGCCACACGACCAGTCATATACGGCAC ATACGCAGCAACCGTCGTCGCACACGGCTTCATCGCTATCTTCTTTGCCCGGATCATGCCGAGGATCCAATCCGC CTGTATCTTCCTCAACATCGCTCTCGTGGTGGCTACCGTCATCGCCCTGCCCATAGGCAAAGCGAAGAATAGCCC GCCTGTCAACCCGGGCACGTATGTCTTTGGGGAGGTACAGAATTTCACTACTTGGCCTGCTGGATGGGCGTTCAT GCTGGCGTGGCTCTCGCCTATCTGGACTATTGGTGCGTTCGATTCCTGCGTGCATATGAGTGAGGAGGCGACGCA TGCTGCTCGCGCCGTGCCGCTGGGAATTATCTCTTCTGCTGGACTATGTGGTATTCTTGGGTTCGTTTCGCTGGC GGTTATTGCGGCGTCGATGGATACGGATATCGAGGGGATTCTGAATTCGAAGTATGGACAGCCTATGACTCAGGT ATGTTTTCGTCTTCTTTCTTTTATGGGGTCGTACTTTCTAATCTGGGTTCTTTATAGATCTACTACGACGCCCTT GGCAAAAGCGGTGCCCTTGGCTTCATGGTCGTGGTAATGATTGTTCAATTCTTCATGGGACTGAGTATTGTGAGT TCCCGTCTTACCATCTACTCGAAATCCCAGAACCCATTCACTAATCCACCCACCCAGGTCCTAGCCGCCTCCCGC CAAAGCTGGGCCTTCTCCCGCGACGGCGCCCTCCCCCTATCCTCCTTCTTCCGCAAAGTAAGCCAACGCAAGTTC ACACGCTACCAGCCAGTCCGCATGGTCTGCGGCATAGTACTCGCATCGATAATCATCGGCCTCCTCTGCCTAATC GACGAAGCAGCCGCCAACGCCCTCTTCTCGCTCGCCGTAGCCGGCAACGACCTCGCCTGGCTAACGCCCATCCTG GCGCGTCTGCTCTGGGGCGGCGAGCGCTTCGTCCCTGGTGAGTTCTATACAGGCGCTTATCTCAGTAAGCCCATC GGGTGGGTTGCCGTCATCTACATGATGTACGTTATTGTTCTTACTATGATTCCTACCGAGGGGCCGAATCCGTCG CGTGAGTTCTATTACTATTCCCGGTGCTTTTGCTTTTGCTGACAGTCTGTTTGAAGCTCAAAATATGAATTATAC GGTTGTTATCAATGGGAGTCTTTGGCTTGGGGCGTTGCTTTATTATTATCTTCATGCGAGGAAGACGTATAAGGG ACCGCAGACTACTGTTAGTCCCGAGGATGAGGGCAAGGCTTTGGAGCAGGACTCGAAATAG |