© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8937.t1 |
| Gene name | |
| Location | scaffold_39:44356..45339 |
| Strand | + |
| Gene length (bp) | 983 |
| Transcript length (bp) | 771 |
| Coding sequence length (bp) | 771 |
| Protein length (aa) | 257 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00977 | His_biosynth | Histidine biosynthesis protein | 5.9E-31 | 6 | 236 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000105 | histidine biosynthetic process | Yes |
| GO:0044281 | small molecule metabolic process | No |
| GO:0019752 | carboxylic acid metabolic process | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006520 | cellular amino acid metabolic process | No |
| GO:0006547 | histidine metabolic process | No |
| GO:0046394 | carboxylic acid biosynthetic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0008652 | cellular amino acid biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0016053 | organic acid biosynthetic process | No |
| GO:0044283 | small molecule biosynthetic process | No |
| GO:0043436 | oxoacid metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 62.37 | 34.46 | 90.29 |
| 5d_25C | Five days - 25 degrees Celsius | 67.14 | 37.71 | 96.58 |
| 7d_25C | Seven days - 25 degrees Celsius | 66.03 | 36.86 | 95.21 |
| 10d_25C | Ten days - 25 degrees Celsius | 59.62 | 32.60 | 86.64 |
| 7d_15C | Seven days - 15 degrees Celsius | 74.00 | 42.11 | 105.90 |
| 7d_30C | Seven days - 30 degrees Celsius | 54.54 | 29.06 | 80.01 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.834789 | no |
| 3d_25C | 7d_25C | 0.876815 | no |
| 3d_25C | 7d_15C | 0.555459 | no |
| 3d_25C | 7d_30C | 0.680489 | no |
| 3d_25C | 10d_25C | 0.906873 | no |
| 5d_25C | 7d_25C | 0.968055 | no |
| 5d_25C | 7d_15C | 0.764510 | no |
| 5d_25C | 7d_30C | 0.473829 | no |
| 5d_25C | 10d_25C | 0.719167 | no |
| 7d_25C | 7d_15C | 0.716421 | no |
| 7d_25C | 7d_30C | 0.515316 | no |
| 7d_25C | 10d_25C | 0.761664 | no |
| 7d_15C | 7d_30C | 0.245212 | no |
| 7d_15C | 10d_25C | 0.443390 | no |
| 7d_30C | 10d_25C | 0.801745 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8937.t1 MTKFRPCIDLHSGQVKQIVGGTLSQVAADLKTNYVSKFPASHYAGLYQKHDLRGGHIVKLGPGNEEAAQEALQTW PGGLQVAGGITDKNAQYWIDQGADKVIITSFLFPGGKFSLERLESVLSALGGDKSKLILDLSCRRKDNTWFVAMD RWQTITEMEINQASIAMLEPYCAEFLIHAADVEGLQQGVDEELVSRLAEWCTIPVTYAGGARHLQDLEKVHTSSK GRVDLTIGSALDIFGGSGVTFDECIEWNKTH* |
| Coding | >Pro_DTO377G3_2|g8937.t1 ATGACTAAATTCAGACCGTGCATTGACCTGCATTCGGGGCAGGTCAAGCAGATTGTGGGTGGTACACTCAGCCAG GTGGCCGCAGACCTGAAGACCAATTACGTATCCAAGTTTCCGGCCAGCCACTATGCGGGATTGTATCAGAAGCAC GATTTGCGCGGCGGGCACATCGTGAAGCTTGGACCTGGGAATGAAGAAGCAGCCCAAGAGGCATTGCAGACATGG CCGGGTGGGCTGCAAGTGGCCGGTGGTATCACCGATAAGAATGCGCAATATTGGATCGATCAGGGTGCGGACAAG GTTATCATCACTTCATTCCTCTTCCCTGGGGGCAAGTTCTCGCTCGAGCGGCTGGAATCGGTTCTTTCTGCTCTG GGCGGCGACAAGTCAAAGCTGATCCTGGACCTGAGCTGCCGCAGAAAAGACAATACTTGGTTCGTTGCGATGGAC CGCTGGCAAACCATCACAGAGATGGAGATCAACCAGGCATCGATCGCAATGTTGGAACCATATTGCGCCGAGTTC CTAATCCACGCTGCAGACGTAGAGGGCCTGCAACAAGGCGTCGATGAAGAACTTGTTTCAAGATTGGCTGAATGG TGTACTATCCCCGTGACCTACGCAGGAGGTGCACGCCATTTACAAGATCTCGAAAAGGTCCACACTAGTAGCAAG GGAAGAGTGGATTTGACGATTGGAAGCGCGCTAGATATCTTTGGCGGCTCTGGAGTGACGTTCGATGAATGTATC GAATGGAACAAAACGCATTAA |
| Transcript | >Pro_DTO377G3_2|g8937.t1 ATGACTAAATTCAGACCGTGCATTGACCTGCATTCGGGGCAGGTCAAGCAGATTGTGGGTGGTACACTCAGCCAG GTGGCCGCAGACCTGAAGACCAATTACGTATCCAAGTTTCCGGCCAGCCACTATGCGGGATTGTATCAGAAGCAC GATTTGCGCGGCGGGCACATCGTGAAGCTTGGACCTGGGAATGAAGAAGCAGCCCAAGAGGCATTGCAGACATGG CCGGGTGGGCTGCAAGTGGCCGGTGGTATCACCGATAAGAATGCGCAATATTGGATCGATCAGGGTGCGGACAAG GTTATCATCACTTCATTCCTCTTCCCTGGGGGCAAGTTCTCGCTCGAGCGGCTGGAATCGGTTCTTTCTGCTCTG GGCGGCGACAAGTCAAAGCTGATCCTGGACCTGAGCTGCCGCAGAAAAGACAATACTTGGTTCGTTGCGATGGAC CGCTGGCAAACCATCACAGAGATGGAGATCAACCAGGCATCGATCGCAATGTTGGAACCATATTGCGCCGAGTTC CTAATCCACGCTGCAGACGTAGAGGGCCTGCAACAAGGCGTCGATGAAGAACTTGTTTCAAGATTGGCTGAATGG TGTACTATCCCCGTGACCTACGCAGGAGGTGCACGCCATTTACAAGATCTCGAAAAGGTCCACACTAGTAGCAAG GGAAGAGTGGATTTGACGATTGGAAGCGCGCTAGATATCTTTGGCGGCTCTGGAGTGACGTTCGATGAATGTATC GAATGGAACAAAACGCATTAA |
| Gene | >Pro_DTO377G3_2|g8937.t1 ATGACTAAATTCAGACCGTGCATTGACCTGCATTCGGGGCAGGTCAAGCAGATTGTGGGTGGTACACTCAGCCAG GTGGCCGCAGACCTGAAGACCAATTACGTATCCAAGTTTCCGGCCAGCCACTATGCGGGATTGTATCAGAAGCAC GATTTGCGCGGCGGGCACATCGTGAAGCTTGGACCTGGGAATGAAGAAGCAGCCCAAGAGGCATTGCAGACATGG CCGGGTGGGCTGCAAGTGGCCGGTGGTATCACCGATAAGAATGCGCAATATTGGATCGATCAGGGTGCGGACAAG GTAAGCCCCCGGATTCCAGACGGATTACTATTTCTTCGCCTGAATTAGGCTTGGTTGAGAACTCAATGATATATA TGCTTTTATTTTTACCTATTTGCTTGCGCTTCGTCATAGTAAGAGTCCAATGACGCTAACCATGTGGAATGCGGG CAATAGGTTATCATCACTTCATTCCTCTTCCCTGGGGGCAAGTTCTCGCTCGAGCGGCTGGAATCGGTTCTTTCT GCTCTGGGCGGCGACAAGTCAAAGCTGATCCTGGACCTGAGCTGCCGCAGAAAAGACAATACTTGGTTCGTTGCG ATGGACCGCTGGCAAACCATCACAGAGATGGAGATCAACCAGGGTATGTCCTACCTGCACTGAACCTAGGCTGGT TCTTAGCCCACTGACATTATGTAGCATCGATCGCAATGTTGGAACCATATTGCGCCGAGTTCCTAATCCACGCTG CAGACGTAGAGGGCCTGCAACAAGGCGTCGATGAAGAACTTGTTTCAAGATTGGCTGAATGGTGTACTATCCCCG TGACCTACGCAGGAGGTGCACGCCATTTACAAGATCTCGAAAAGGTCCACACTAGTAGCAAGGGAAGAGTGGATT TGACGATTGGAAGCGCGCTAGATATCTTTGGCGGCTCTGGAGTGACGTTCGATGAATGTATCGAATGGAACAAAA CGCATTAA |