© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8932.t1 |
| Gene name | |
| Location | scaffold_39:30315..31914 |
| Strand | + |
| Gene length (bp) | 1599 |
| Transcript length (bp) | 1410 |
| Coding sequence length (bp) | 1410 |
| Protein length (aa) | 470 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00150 | Cellulase | Cellulase (glycosyl hydrolase family 5) | 9.1E-30 | 68 | 335 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0071704 | organic substance metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 59 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.73 | 0.00 | 1.47 |
| 5d_25C | Five days - 25 degrees Celsius | 0.90 | 0.02 | 1.79 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.60 | 0.00 | 1.26 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.47 | 0.00 | 1.04 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.43 | 0.00 | 0.98 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.71 | 0.23 | 3.18 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.782067 | no |
| 3d_25C | 7d_25C | 0.817335 | no |
| 3d_25C | 7d_15C | 0.496378 | no |
| 3d_25C | 7d_30C | 0.123554 | no |
| 3d_25C | 10d_25C | 0.567274 | no |
| 5d_25C | 7d_25C | 0.552931 | no |
| 5d_25C | 7d_15C | 0.305142 | no |
| 5d_25C | 7d_30C | 0.268492 | no |
| 5d_25C | 10d_25C | 0.340433 | no |
| 7d_25C | 7d_15C | 1.000000 | no |
| 7d_25C | 7d_30C | 0.058634 | no |
| 7d_25C | 10d_25C | 1.000000 | no |
| 7d_15C | 7d_30C | 0.049382 | yes |
| 7d_15C | 10d_25C | 1.000000 | no |
| 7d_30C | 10d_25C | 0.037576 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8932.t1 MATSFLHVKGDIIVDGNGKAVVMRGAALGGWMNMENFITGFAGHEAQHRAAMRRVLGKQRYEFFFDKWLEYFFTE ADAKFFAELGLNCLRLPFNYRHFEDDMNPRVLKESGFKHLDRVVDLCAAHGIYTILDMHAVPGGQNPDWHSDNPT GYAAFWDYKDHQDRTVWLWEQIAARYRDNPWVAGYNPLNEPCDPEHVRLPAFYARVEKAIRNIDPNHIMWLDGNT FAMEWKGFDEVLPNCVYAMHDYSSMGFPTGDRYKGTNEQKERLEQGYLRKARFMSENKTPVWNGEFGPVYADHIF DFDAETVNQERYNLLGDQLRIYDKYNISWSIWLYKDIGLQGMIYTNPASKWNKTLKPFLDKKRDFWLDKWGRRPK SEPEAALKPLLEWIDRVSPTAKETYPTSWNTELHVMRNVFYTFLAASFVDEFAELFRGSSEKDLEELARSFHFES CIQREGLNRILKDHAHGSH* |
| Coding | >Pro_DTO377G3_2|g8932.t1 ATGGCTACCAGCTTCCTTCACGTGAAGGGTGATATTATTGTTGACGGAAATGGAAAGGCAGTTGTGATGCGAGGA GCTGCTCTTGGAGGGTGGATGAATATGGAGAATTTCATCACAGGCTTCGCAGGCCACGAAGCCCAGCACCGCGCC GCCATGCGCCGAGTCCTAGGAAAACAGAGATATGAATTCTTCTTCGACAAATGGCTGGAGTACTTCTTCACCGAA GCGGATGCCAAATTCTTCGCCGAGTTAGGGTTGAACTGTCTGCGTCTGCCTTTCAACTACCGCCACTTTGAAGAC GATATGAATCCCCGGGTGTTAAAGGAATCAGGGTTCAAACATTTGGACCGAGTCGTCGATCTGTGCGCAGCCCAC GGGATCTATACCATCCTGGATATGCACGCTGTCCCCGGTGGTCAGAACCCAGACTGGCATTCTGACAATCCTACC GGCTATGCTGCTTTCTGGGATTACAAAGACCACCAAGACCGGACTGTTTGGCTCTGGGAGCAGATTGCCGCCAGG TACAGAGATAATCCTTGGGTTGCTGGGTACAACCCGCTCAATGAACCTTGCGATCCTGAGCATGTACGACTACCC GCATTCTATGCTCGTGTTGAAAAGGCAATTCGCAATATCGATCCGAATCATATAATGTGGCTGGATGGTAATACG TTTGCGATGGAATGGAAGGGGTTTGACGAGGTGCTGCCGAACTGCGTGTATGCCATGCATGATTACTCATCAATG GGCTTCCCTACCGGCGATCGCTACAAAGGCACAAATGAACAAAAAGAACGCCTTGAACAGGGGTACCTGCGCAAA GCGCGATTCATGAGCGAGAACAAGACCCCCGTCTGGAATGGGGAGTTCGGACCCGTCTACGCAGATCATATTTTT GACTTCGATGCCGAGACTGTTAATCAGGAGCGATACAACCTCCTTGGTGACCAGCTGCGCATCTACGACAAGTAT AACATCAGTTGGTCGATCTGGCTCTACAAGGACATTGGTCTGCAGGGTATGATCTACACGAATCCTGCGAGCAAG TGGAACAAGACACTCAAGCCTTTTCTGGACAAGAAGAGAGACTTCTGGCTGGATAAATGGGGCCGTCGGCCTAAG TCTGAGCCCGAGGCGGCTTTGAAGCCTTTGCTCGAGTGGATTGACCGCGTTAGTCCAACTGCGAAGGAAACTTAT CCCACGTCGTGGAATACGGAGTTGCATGTCATGCGCAATGTGTTTTACACTTTCTTAGCGGCTTCGTTTGTGGAT GAGTTTGCTGAATTGTTTCGAGGAAGCAGTGAGAAGGATCTGGAAGAACTGGCCAGGAGTTTCCACTTTGAGAGT TGTATACAGCGAGAGGGTTTGAATCGCATACTCAAGGATCACGCACATGGGTCTCATTGA |
| Transcript | >Pro_DTO377G3_2|g8932.t1 ATGGCTACCAGCTTCCTTCACGTGAAGGGTGATATTATTGTTGACGGAAATGGAAAGGCAGTTGTGATGCGAGGA GCTGCTCTTGGAGGGTGGATGAATATGGAGAATTTCATCACAGGCTTCGCAGGCCACGAAGCCCAGCACCGCGCC GCCATGCGCCGAGTCCTAGGAAAACAGAGATATGAATTCTTCTTCGACAAATGGCTGGAGTACTTCTTCACCGAA GCGGATGCCAAATTCTTCGCCGAGTTAGGGTTGAACTGTCTGCGTCTGCCTTTCAACTACCGCCACTTTGAAGAC GATATGAATCCCCGGGTGTTAAAGGAATCAGGGTTCAAACATTTGGACCGAGTCGTCGATCTGTGCGCAGCCCAC GGGATCTATACCATCCTGGATATGCACGCTGTCCCCGGTGGTCAGAACCCAGACTGGCATTCTGACAATCCTACC GGCTATGCTGCTTTCTGGGATTACAAAGACCACCAAGACCGGACTGTTTGGCTCTGGGAGCAGATTGCCGCCAGG TACAGAGATAATCCTTGGGTTGCTGGGTACAACCCGCTCAATGAACCTTGCGATCCTGAGCATGTACGACTACCC GCATTCTATGCTCGTGTTGAAAAGGCAATTCGCAATATCGATCCGAATCATATAATGTGGCTGGATGGTAATACG TTTGCGATGGAATGGAAGGGGTTTGACGAGGTGCTGCCGAACTGCGTGTATGCCATGCATGATTACTCATCAATG GGCTTCCCTACCGGCGATCGCTACAAAGGCACAAATGAACAAAAAGAACGCCTTGAACAGGGGTACCTGCGCAAA GCGCGATTCATGAGCGAGAACAAGACCCCCGTCTGGAATGGGGAGTTCGGACCCGTCTACGCAGATCATATTTTT GACTTCGATGCCGAGACTGTTAATCAGGAGCGATACAACCTCCTTGGTGACCAGCTGCGCATCTACGACAAGTAT AACATCAGTTGGTCGATCTGGCTCTACAAGGACATTGGTCTGCAGGGTATGATCTACACGAATCCTGCGAGCAAG TGGAACAAGACACTCAAGCCTTTTCTGGACAAGAAGAGAGACTTCTGGCTGGATAAATGGGGCCGTCGGCCTAAG TCTGAGCCCGAGGCGGCTTTGAAGCCTTTGCTCGAGTGGATTGACCGCGTTAGTCCAACTGCGAAGGAAACTTAT CCCACGTCGTGGAATACGGAGTTGCATGTCATGCGCAATGTGTTTTACACTTTCTTAGCGGCTTCGTTTGTGGAT GAGTTTGCTGAATTGTTTCGAGGAAGCAGTGAGAAGGATCTGGAAGAACTGGCCAGGAGTTTCCACTTTGAGAGT TGTATACAGCGAGAGGGTTTGAATCGCATACTCAAGGATCACGCACATGGGTCTCATTGA |
| Gene | >Pro_DTO377G3_2|g8932.t1 ATGGCTACCAGCTTCCTTCACGTGAAGGGTGATATTATTGTTGACGGAAATGGAAAGGCAGTTGTGATGCGAGGA GCTGCTCTTGGAGGGTGGATGAAGTATGCAAATGATCGGATTGCCGTATCATTCCCCTGTCCTCAAACTGACATC CCATCTTAGTATGGAGAATTTCATCACAGGCTTCGCAGGCCACGAAGCCCAGCACCGCGCCGCCATGCGCCGAGT CCTAGGAAAACAGAGATATGAATTCTTCTTCGACAAATGGCTGGAGTACTTCTTCACCGAAGCGGATGCCAAATT CTTCGCCGAGTTAGGGTTGAACTGTCTGCGTCTGCCTTTCAACTACCGCCACTTTGAAGACGATATGAATCCCCG GGTGTTAAAGGAATCAGGGTTCAAACATTTGGACCGAGTCGTCGATCTGGTCGGTGTTTCACATATTCATCTGCA TGGGGGTAGCGACTAATCTCGATAGCCTTATAGTGCGCAGCCCACGGGATCTATACCATCCTGGATATGCACGCT GTCCCCGGTGGTCAGAACCCAGACTGGCATTCTGACAATCCTACCGGCTATGCTGCTTTCTGGGATTACAAAGAC CACCAAGACCGGACTGTTTGGCTCTGGGAGCAGATTGCCGCCAGGTACAGAGATAATCCTTGGGTTGCTGGGTAC AACCCGCTCAATGAACCTTGCGATCCTGAGCATGTACGACTACCCGCATTCTATGCTCGTGTTGAAAAGGCAATT CGCAATATCGATCCGAATCATATAATGTGGCTGGATGGTAATACGTTTGCGATGGAATGGAAGGGGTTTGACGAG GTGCTGCCGAACTGCGTGTATGCCATGCATGATTACTCAGTGAGCTTCACATTCCTTTCGAGGTCGTGAGATAAG GGCGTTCTTGTTCTAATACGATATAATCTCTAGTCAATGGGCTTCCCTACCGGCGATCGCTACAAAGGCACAAAT GAACAAAAAGAACGCCTTGAACAGGGGTACCTGCGCAAAGCGCGATTCATGAGCGAGAACAAGACCCCCGTCTGG AATGGGGAGTTCGGACCCGTCTACGCAGATCATATTTTTGACTTCGATGCCGAGACTGTTAATCAGGAGCGATAC AACCTCCTTGGTGACCAGCTGCGCATCTACGACAAGTATAACATCAGTTGGTCGATCTGGCTCTACAAGGACATT GGTCTGCAGGGTATGATCTACACGAATCCTGCGAGCAAGTGGAACAAGACACTCAAGCCTTTTCTGGACAAGAAG AGAGACTTCTGGCTGGATAAATGGGGCCGTCGGCCTAAGTCTGAGCCCGAGGCGGCTTTGAAGCCTTTGCTCGAG TGGATTGACCGCGTTAGTCCAACTGCGAAGGAAACTTATCCCACGTCGTGGAATACGGAGTTGCATGTCATGCGC AATGTGTTTTACACTTTCTTAGCGGCTTCGTTTGTGGATGAGTTTGCTGAATTGTTTCGAGGAAGCAGTGAGAAG GATCTGGAAGAACTGGCCAGGAGTTTCCACTTTGAGAGTTGTATACAGCGAGAGGGTTTGAATCGCATACTCAAG GATCACGCACATGGGTCTCATTGA |