© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8922.t1 |
| Gene name | |
| Location | scaffold_38:203993..205698 |
| Strand | + |
| Gene length (bp) | 1705 |
| Transcript length (bp) | 1389 |
| Coding sequence length (bp) | 1389 |
| Protein length (aa) | 463 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01490 | Aa_trans | Transmembrane amino acid transporter protein | 8.4E-45 | 51 | 438 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 68 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 54 | 73 | 19 |
| 2 | 77 | 99 | 22 |
| 3 | 137 | 159 | 22 |
| 4 | 164 | 181 | 17 |
| 5 | 193 | 212 | 19 |
| 6 | 232 | 254 | 22 |
| 7 | 267 | 289 | 22 |
| 8 | 309 | 331 | 22 |
| 9 | 352 | 374 | 22 |
| 10 | 379 | 401 | 22 |
| 11 | 414 | 436 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 13.49 | 6.01 | 20.97 |
| 5d_25C | Five days - 25 degrees Celsius | 17.73 | 8.57 | 26.88 |
| 7d_25C | Seven days - 25 degrees Celsius | 17.31 | 8.24 | 26.39 |
| 10d_25C | Ten days - 25 degrees Celsius | 25.92 | 13.79 | 38.06 |
| 7d_15C | Seven days - 15 degrees Celsius | 14.56 | 6.66 | 22.46 |
| 7d_30C | Seven days - 30 degrees Celsius | 24.77 | 12.88 | 36.66 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.431312 | no |
| 3d_25C | 7d_25C | 0.477629 | no |
| 3d_25C | 7d_15C | 0.865333 | no |
| 3d_25C | 7d_30C | 0.032612 | yes |
| 3d_25C | 10d_25C | 0.022435 | yes |
| 5d_25C | 7d_25C | 0.960158 | no |
| 5d_25C | 7d_15C | 0.586869 | no |
| 5d_25C | 7d_30C | 0.253534 | no |
| 5d_25C | 10d_25C | 0.178866 | no |
| 7d_25C | 7d_15C | 0.639826 | no |
| 7d_25C | 7d_30C | 0.211485 | no |
| 7d_25C | 10d_25C | 0.146409 | no |
| 7d_15C | 7d_30C | 0.052547 | no |
| 7d_15C | 10d_25C | 0.033043 | yes |
| 7d_30C | 10d_25C | 0.912126 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8922.t1 MNTSQSDIDLQSLRSVKRKLDPENDSVVPKPDLEESDPFGDESQSGVKYKTMAWWQAGMIMIAETISLGILALPK ALAVLGLVPGILTILGVGIISTYTAYTIGRFKCRHVQVHSMADAGDLLMGRVGRTTLDVAQLVFFVLVMGSHILT FSIMMNVLTEHSSCTIVFSVVGLLASFMLTLPRRLERLSHISSVSFVSIVGAVLTGMIGVTLVKQGPVEVPAFSP PPKVHDACLAIANIIFAYAGHVAFFTLFSELKELKDFPKALALLQMSEMVLYTVASIMIYAYVGPTVNSPALNSS GQLFRKISYAIALPTILIGGVVNAHVAVKFIYVRVFRGTNSMHTQSFRARVVWTVTCAGLWILSWIIAEAIPVFN DVLGLASSLFASWFSFGLPGLFWLYLNRTCWYMTWRQRALFGFNLFLVFLGFVICIVGLYSSIRSIFNNLREGVG GGSFSCADNSLY* |
| Coding | >Pro_DTO377G3_2|g8922.t1 ATGAATACCAGTCAGTCTGATATTGACCTCCAGTCGCTGCGCTCTGTGAAGCGCAAGTTGGACCCGGAGAACGAT TCTGTTGTACCAAAGCCAGATCTGGAGGAGTCCGATCCCTTTGGAGACGAAAGCCAATCTGGCGTGAAGTACAAG ACCATGGCGTGGTGGCAAGCCGGCATGATCATGATCGCAGAAACCATCTCGCTTGGTATTCTCGCGCTGCCCAAA GCGCTTGCTGTTCTAGGTCTTGTTCCCGGCATCCTAACCATCCTCGGGGTTGGGATCATCTCGACGTATACCGCA TATACCATCGGGCGATTCAAATGCCGCCATGTCCAAGTGCACAGTATGGCTGATGCTGGTGATCTTCTGATGGGA AGGGTTGGACGGACTACACTGGATGTGGCCCAGCTCGTCTTTTTTGTGTTGGTCATGGGAAGCCATATCCTCACT TTTTCCATCATGATGAACGTTCTCACCGAACATTCTTCCTGCACCATCGTATTTTCGGTTGTCGGTCTACTCGCC TCGTTCATGTTGACCCTTCCACGGCGACTTGAGAGGCTTTCTCACATCTCCTCCGTGAGCTTTGTGAGTATCGTC GGAGCGGTTCTTACTGGTATGATTGGAGTCACCCTTGTCAAACAAGGCCCAGTGGAGGTCCCAGCTTTTTCGCCT CCGCCCAAAGTGCATGATGCGTGCCTTGCTATTGCAAACATAATATTTGCGTACGCAGGACATGTTGCATTCTTT ACCCTTTTCTCCGAGCTCAAAGAGCTCAAGGACTTCCCAAAGGCTCTGGCGCTTTTGCAGATGAGTGAAATGGTC TTGTACACAGTGGCTTCTATTATGATATATGCCTATGTTGGGCCAACTGTCAACTCACCTGCTCTCAATTCTTCG GGACAATTGTTTCGCAAGATTTCCTATGCAATCGCACTACCTACGATCCTGATCGGGGGTGTGGTGAACGCCCAT GTTGCCGTCAAGTTCATTTACGTTCGTGTCTTCCGGGGGACCAACTCGATGCATACCCAGTCATTTAGGGCGCGG GTAGTTTGGACTGTTACATGTGCGGGGCTTTGGATCTTGTCGTGGATCATCGCCGAGGCAATACCGGTTTTCAAC GATGTACTAGGGCTTGCGAGTTCCTTATTTGCTAGCTGGTTTTCATTCGGTCTACCTGGGCTATTCTGGCTCTAT CTGAACCGAACTTGTTGGTACATGACCTGGCGACAGAGGGCATTGTTTGGCTTCAATCTTTTTCTGGTGTTTCTT GGATTTGTCATTTGCATTGTCGGGTTGTACTCGTCTATTCGGTCGATCTTTAACAACCTTCGCGAGGGTGTCGGA GGAGGTAGCTTCTCATGTGCCGACAATTCCCTCTATTGA |
| Transcript | >Pro_DTO377G3_2|g8922.t1 ATGAATACCAGTCAGTCTGATATTGACCTCCAGTCGCTGCGCTCTGTGAAGCGCAAGTTGGACCCGGAGAACGAT TCTGTTGTACCAAAGCCAGATCTGGAGGAGTCCGATCCCTTTGGAGACGAAAGCCAATCTGGCGTGAAGTACAAG ACCATGGCGTGGTGGCAAGCCGGCATGATCATGATCGCAGAAACCATCTCGCTTGGTATTCTCGCGCTGCCCAAA GCGCTTGCTGTTCTAGGTCTTGTTCCCGGCATCCTAACCATCCTCGGGGTTGGGATCATCTCGACGTATACCGCA TATACCATCGGGCGATTCAAATGCCGCCATGTCCAAGTGCACAGTATGGCTGATGCTGGTGATCTTCTGATGGGA AGGGTTGGACGGACTACACTGGATGTGGCCCAGCTCGTCTTTTTTGTGTTGGTCATGGGAAGCCATATCCTCACT TTTTCCATCATGATGAACGTTCTCACCGAACATTCTTCCTGCACCATCGTATTTTCGGTTGTCGGTCTACTCGCC TCGTTCATGTTGACCCTTCCACGGCGACTTGAGAGGCTTTCTCACATCTCCTCCGTGAGCTTTGTGAGTATCGTC GGAGCGGTTCTTACTGGTATGATTGGAGTCACCCTTGTCAAACAAGGCCCAGTGGAGGTCCCAGCTTTTTCGCCT CCGCCCAAAGTGCATGATGCGTGCCTTGCTATTGCAAACATAATATTTGCGTACGCAGGACATGTTGCATTCTTT ACCCTTTTCTCCGAGCTCAAAGAGCTCAAGGACTTCCCAAAGGCTCTGGCGCTTTTGCAGATGAGTGAAATGGTC TTGTACACAGTGGCTTCTATTATGATATATGCCTATGTTGGGCCAACTGTCAACTCACCTGCTCTCAATTCTTCG GGACAATTGTTTCGCAAGATTTCCTATGCAATCGCACTACCTACGATCCTGATCGGGGGTGTGGTGAACGCCCAT GTTGCCGTCAAGTTCATTTACGTTCGTGTCTTCCGGGGGACCAACTCGATGCATACCCAGTCATTTAGGGCGCGG GTAGTTTGGACTGTTACATGTGCGGGGCTTTGGATCTTGTCGTGGATCATCGCCGAGGCAATACCGGTTTTCAAC GATGTACTAGGGCTTGCGAGTTCCTTATTTGCTAGCTGGTTTTCATTCGGTCTACCTGGGCTATTCTGGCTCTAT CTGAACCGAACTTGTTGGTACATGACCTGGCGACAGAGGGCATTGTTTGGCTTCAATCTTTTTCTGGTGTTTCTT GGATTTGTCATTTGCATTGTCGGGTTGTACTCGTCTATTCGGTCGATCTTTAACAACCTTCGCGAGGGTGTCGGA GGAGGTAGCTTCTCATGTGCCGACAATTCCCTCTATTGA |
| Gene | >Pro_DTO377G3_2|g8922.t1 ATGAATACCAGTCAGTCTGATATTGACCTCCAGTCGCTGCGCTCTGTGAAGCGCAAGTTGGACCCGGAGAACGAT TCTGTTGTACCAAAGCCAGATCTGGAGGAGTCCGATCCCTTTGGAGACGAAAGCCAATCTGGCGTGAAGTACAAG ACCATGGCGTGGTGGTAAGTGTTTCCTTTTCCACAGGCAGGATGAAGCTCATCCTTTCAATAGGCAAGCCGGCAT GAGTAAGTCAATGTCTTACATATTGCCCAGCTTTCTCTAACAAACCGGTCAGTCATGATCGCAGAAACCATCTCG CTTGGTATTCTCGCGCTGCCCAAAGCGCTTGCTGTTCTAGGTCTTGTTCCGTACATTCTCCTCCCCGCTGGCTGC AAAGGCCGATGAGCTAACCTGTTTGTTCAGCGGCATCCTAACCATCCTCGGGGTTGGGATCATCTCGACGTATAC CGCATATACCATCGGGCGATTCAAATGCCGCCATGTCCAAGTGCACAGTATGGCTGATGCTGGTGATCTTCTGAT GGGAAGGGTTGGACGGACTACACTGGATGTGGCCCAGCTCGTCTTTTTTGTGTTGGTCATGGGAAGCCATATCCT CACTTTTTCCATCATGATGAACGTTCTCACCGAACATTCTTCCTGCACCATCGTATTTTCGGTTGTCGGTCTACT CGCCTCGTTCATGTTGACCCTTCCACGGCGACTTGAGAGGCTTTCTCACATCTCCTCCGTGAGCTTTGTGAGTAT CGTCGGAGCGGTTCTTACTGGTATGATTGGAGTCACCCTTGTCAAACAAGGCCCAGTGGAGGTCCCAGCTTTTTC GCCTCCGCCCAAAGTGCATGATGCGTGCCTTGCTATTGCAAACATAATATTTGCGTACGCAGGACATGTTGCATT CTTTACCCTTTTCTCCGAGCTCAAAGAGCTCAAGGACTTCCCAAAGGCTCTGGCGCTTTTGCAGATGAGTGAAAT GGTCTTGTACACAGTGGCTTCTATTATGATATATGCCTATGTTGGGCCAACTGTCAACTCACCTGCTCTCAATTC TTCGGGACAATTGTTTCGCAAGATTTCCTATGCAATCGCACTACCTACGGTACGTATCTTTTTCCGTGTACTTCT TTTGGATATGAGCTTAACCAATGCACAGATCCTGATCGGGGGTGTGGTGAACGCCCATGTTGCCGTCAAGTTCAT TTACGTTCGTGTCTTCCGGGGGACCAACTCGATGCATACCCAGTCATTTAGGGCGCGGGTAGTTTGGACTGTTAC ATGTGCGGGGCTTTGGATCTTGTCGTGGATCATCGCCGAGGCAATACCGGTTTTCAACGATGTACTAGGGCTTGC GGTGTGTACTACCTGTCCCTGACCCCACCTGCAGCGAGTACTAATCATTCCAACCAGAGTTCCTTATTTGCTAGC TGGTTTTCATTCGGTCTACCTGGGCTATTCTGGCTCTATCTGAACCGAACTTGTTGGTACATGACCTGGCGACAG AGGGCATTGTTTGGCTTCAATCTTTTTCTGGTGTTTCTTGGATTTGTCATTGTAAGTTGAGCTCTACTGTGGTTT GAAGGGTCGAGTTAACCTACGCCACCAGTGCATTGTCGGGTTGTACTCGTCTATTCGGTCGATCTTTAACAACCT TCGCGAGGGTGTCGGAGGAGGTAGCTTCTCATGTGCCGACAATTCCCTCTATTGA |