© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8921.t1 |
| Gene name | |
| Location | scaffold_38:201469..203750 |
| Strand | + |
| Gene length (bp) | 2281 |
| Transcript length (bp) | 2097 |
| Coding sequence length (bp) | 2097 |
| Protein length (aa) | 699 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01266 | DAO | FAD dependent oxidoreductase | 5.1E-51 | 82 | 453 |
| PF16901 | DAO_C | C-terminal domain of alpha-glycerophosphate oxidase | 1.7E-42 | 499 | 626 |
| PF00890 | FAD_binding_2 | FAD binding domain | 4.6E-09 | 82 | 315 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 9 | 31 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 91.68 | 55.97 | 127.40 |
| 5d_25C | Five days - 25 degrees Celsius | 75.97 | 46.59 | 105.34 |
| 7d_25C | Seven days - 25 degrees Celsius | 66.37 | 40.71 | 92.03 |
| 10d_25C | Ten days - 25 degrees Celsius | 56.76 | 34.70 | 78.83 |
| 7d_15C | Seven days - 15 degrees Celsius | 89.30 | 54.54 | 124.05 |
| 7d_30C | Seven days - 30 degrees Celsius | 57.68 | 35.35 | 80.02 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.440854 | no |
| 3d_25C | 7d_25C | 0.135418 | no |
| 3d_25C | 7d_15C | 0.937523 | no |
| 3d_25C | 7d_30C | 0.021921 | yes |
| 3d_25C | 10d_25C | 0.020393 | yes |
| 5d_25C | 7d_25C | 0.602276 | no |
| 5d_25C | 7d_15C | 0.523518 | no |
| 5d_25C | 7d_30C | 0.212879 | no |
| 5d_25C | 10d_25C | 0.183361 | no |
| 7d_25C | 7d_15C | 0.177767 | no |
| 7d_25C | 7d_30C | 0.590804 | no |
| 7d_25C | 10d_25C | 0.540389 | no |
| 7d_15C | 7d_30C | 0.033480 | yes |
| 7d_15C | 10d_25C | 0.032181 | yes |
| 7d_30C | 10d_25C | 0.964042 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 7407 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8921.t1 MAARHSRKFLRPLLYTSAAAAAGAGVIYISYRPRNIPGLEAPAVPPPGYYKGKLVPPSFPSIKSRLEQIEDLKRS EEEEEYDLLVIGAGATGAGIALDAATRGLKVAVVERDDFSSGTSSKSTKLVHGGVRYLEKAVWELDYNQYALVKE ALRERKYFLNTAPHLSSWLPIMVPVQKWWQAPYFWAGTKAYDFLAGSEGIETSYFLTKSKAIDAFPMLKRDNIIG AMVYYDGAHNDSRMNVSLAMTAALYGTTVVNHLEVTGLNKDASGRLCGARAKDIVAEKNGEVAKEFNIRAKGVIN ATGPFSDSIRKMDEPNVKEIVAPSAGVHIILPGYFSPSNMGLIDPSTSDGRVIFFLPWQGNTIAGTTDQPCEIEA QPQPTEKDINWILSEIRGYIAPDITVDRSDVLAAWSGIRPLVRDPKVKNSEALVRNHLVTVSQSGLLTCAGGKWT TYRQMAEEAVDEAVKSFKLKPRQLNSLPDISGVGGSDLVADGAVLDGSCQTHQVRLIGAHGYSKTLFINLIQHFG LETDVAKHLTESYGDRSWQVAALSSPTSERFPVRGCRISPMYPFVDGEIRYAVRHEYAQTAVDVIARRTRLAFLN AEAALESLPTVIDTMAEELKWTNARKDLEWKDSLTFLSSMGLPKSFMGLSRHDVQNGRVTQVDDAERATFSRKEP PADMIESDVRATIEPPAATPALG* |
| Coding | >Pro_DTO377G3_2|g8921.t1 ATGGCCGCTCGGCACTCGCGCAAGTTTTTGCGACCTCTCCTCTACACATCGGCGGCCGCCGCCGCAGGAGCAGGT GTTATCTACATTTCTTACCGTCCGCGAAATATTCCAGGCCTCGAAGCCCCTGCCGTTCCTCCGCCAGGTTACTAC AAAGGCAAGCTGGTCCCGCCCAGTTTCCCTTCCATCAAGTCTCGCCTCGAACAGATTGAGGACCTCAAGCGCAGT GAGGAGGAGGAGGAATATGATCTGCTTGTCATTGGTGCCGGAGCCACTGGAGCCGGTATCGCATTAGATGCCGCC ACACGAGGCCTGAAGGTCGCGGTGGTGGAGAGAGATGATTTCAGTTCGGGTACTAGTAGTAAGAGTACCAAGCTG GTACACGGTGGTGTCCGTTACCTTGAAAAGGCCGTGTGGGAGTTGGACTACAACCAATATGCGCTAGTCAAGGAG GCTCTCAGAGAGCGCAAGTACTTCCTAAACACAGCTCCCCATCTGTCATCATGGCTGCCAATCATGGTGCCTGTT CAGAAATGGTGGCAGGCTCCGTATTTCTGGGCTGGCACCAAGGCCTATGACTTCTTGGCTGGTTCCGAGGGCATT GAGACCTCGTACTTCCTCACCAAGAGTAAGGCCATTGATGCGTTCCCCATGCTGAAGCGTGACAACATCATTGGA GCAATGGTGTACTATGATGGTGCTCACAACGACTCCCGCATGAACGTCTCCCTCGCTATGACCGCTGCGCTCTAC GGTACCACTGTCGTGAACCACTTGGAGGTCACCGGACTGAACAAGGATGCATCCGGCAGGCTGTGCGGTGCGCGC GCCAAGGACATCGTCGCAGAGAAGAACGGCGAGGTCGCCAAGGAGTTCAACATTCGCGCCAAGGGTGTCATCAAC GCCACTGGTCCCTTCTCTGATTCCATCCGCAAGATGGATGAGCCCAATGTCAAGGAGATTGTGGCCCCCAGTGCT GGTGTTCACATCATCCTGCCCGGTTACTTCAGCCCCTCAAACATGGGTCTCATTGACCCTTCCACCTCGGATGGA CGTGTGATTTTCTTCCTGCCGTGGCAGGGTAACACCATCGCCGGTACCACTGACCAGCCCTGTGAGATTGAGGCT CAGCCCCAGCCCACTGAGAAGGATATAAACTGGATTCTTTCGGAGATTCGTGGCTACATCGCCCCCGATATCACC GTCGACCGAAGCGACGTCCTTGCTGCCTGGTCTGGCATCCGTCCCTTGGTGCGCGATCCCAAGGTGAAGAACTCG GAGGCTCTCGTCCGCAACCACCTGGTGACCGTCTCTCAGTCTGGACTGTTGACTTGCGCCGGTGGTAAGTGGACT ACTTACCGCCAGATGGCCGAGGAGGCCGTGGACGAGGCAGTCAAATCGTTCAAGCTCAAGCCCCGCCAGCTCAAC AGCCTTCCCGACATCAGTGGTGTCGGAGGCAGTGATCTGGTTGCTGACGGTGCCGTTCTCGACGGTAGCTGCCAG ACCCACCAGGTGCGCCTCATTGGTGCCCACGGTTACTCCAAGACCCTCTTCATCAACCTTATCCAGCACTTCGGT CTCGAGACCGATGTGGCCAAGCACCTCACCGAGTCGTACGGTGATCGCTCATGGCAGGTCGCTGCCTTGTCTTCC CCTACCAGCGAACGTTTCCCCGTGCGCGGCTGCCGTATCTCCCCTATGTACCCCTTCGTTGATGGTGAGATTCGC TACGCCGTTCGTCACGAGTATGCCCAGACTGCCGTCGACGTGATTGCCCGTCGCACTCGTCTGGCTTTCCTGAAC GCCGAGGCCGCCCTTGAATCCCTCCCCACTGTGATTGACACAATGGCCGAGGAGTTGAAGTGGACCAACGCCCGT AAGGATCTCGAGTGGAAGGATTCCTTGACTTTCCTTTCATCCATGGGTCTGCCTAAGAGCTTCATGGGCCTGTCG CGTCATGATGTCCAGAATGGCCGTGTTACGCAGGTTGATGATGCCGAGCGTGCGACTTTCTCCCGTAAAGAACCC CCCGCGGATATGATTGAGAGTGACGTTCGTGCTACTATTGAACCCCCTGCCGCAACACCCGCGCTCGGCTAG |
| Transcript | >Pro_DTO377G3_2|g8921.t1 ATGGCCGCTCGGCACTCGCGCAAGTTTTTGCGACCTCTCCTCTACACATCGGCGGCCGCCGCCGCAGGAGCAGGT GTTATCTACATTTCTTACCGTCCGCGAAATATTCCAGGCCTCGAAGCCCCTGCCGTTCCTCCGCCAGGTTACTAC AAAGGCAAGCTGGTCCCGCCCAGTTTCCCTTCCATCAAGTCTCGCCTCGAACAGATTGAGGACCTCAAGCGCAGT GAGGAGGAGGAGGAATATGATCTGCTTGTCATTGGTGCCGGAGCCACTGGAGCCGGTATCGCATTAGATGCCGCC ACACGAGGCCTGAAGGTCGCGGTGGTGGAGAGAGATGATTTCAGTTCGGGTACTAGTAGTAAGAGTACCAAGCTG GTACACGGTGGTGTCCGTTACCTTGAAAAGGCCGTGTGGGAGTTGGACTACAACCAATATGCGCTAGTCAAGGAG GCTCTCAGAGAGCGCAAGTACTTCCTAAACACAGCTCCCCATCTGTCATCATGGCTGCCAATCATGGTGCCTGTT CAGAAATGGTGGCAGGCTCCGTATTTCTGGGCTGGCACCAAGGCCTATGACTTCTTGGCTGGTTCCGAGGGCATT GAGACCTCGTACTTCCTCACCAAGAGTAAGGCCATTGATGCGTTCCCCATGCTGAAGCGTGACAACATCATTGGA GCAATGGTGTACTATGATGGTGCTCACAACGACTCCCGCATGAACGTCTCCCTCGCTATGACCGCTGCGCTCTAC GGTACCACTGTCGTGAACCACTTGGAGGTCACCGGACTGAACAAGGATGCATCCGGCAGGCTGTGCGGTGCGCGC GCCAAGGACATCGTCGCAGAGAAGAACGGCGAGGTCGCCAAGGAGTTCAACATTCGCGCCAAGGGTGTCATCAAC GCCACTGGTCCCTTCTCTGATTCCATCCGCAAGATGGATGAGCCCAATGTCAAGGAGATTGTGGCCCCCAGTGCT GGTGTTCACATCATCCTGCCCGGTTACTTCAGCCCCTCAAACATGGGTCTCATTGACCCTTCCACCTCGGATGGA CGTGTGATTTTCTTCCTGCCGTGGCAGGGTAACACCATCGCCGGTACCACTGACCAGCCCTGTGAGATTGAGGCT CAGCCCCAGCCCACTGAGAAGGATATAAACTGGATTCTTTCGGAGATTCGTGGCTACATCGCCCCCGATATCACC GTCGACCGAAGCGACGTCCTTGCTGCCTGGTCTGGCATCCGTCCCTTGGTGCGCGATCCCAAGGTGAAGAACTCG GAGGCTCTCGTCCGCAACCACCTGGTGACCGTCTCTCAGTCTGGACTGTTGACTTGCGCCGGTGGTAAGTGGACT ACTTACCGCCAGATGGCCGAGGAGGCCGTGGACGAGGCAGTCAAATCGTTCAAGCTCAAGCCCCGCCAGCTCAAC AGCCTTCCCGACATCAGTGGTGTCGGAGGCAGTGATCTGGTTGCTGACGGTGCCGTTCTCGACGGTAGCTGCCAG ACCCACCAGGTGCGCCTCATTGGTGCCCACGGTTACTCCAAGACCCTCTTCATCAACCTTATCCAGCACTTCGGT CTCGAGACCGATGTGGCCAAGCACCTCACCGAGTCGTACGGTGATCGCTCATGGCAGGTCGCTGCCTTGTCTTCC CCTACCAGCGAACGTTTCCCCGTGCGCGGCTGCCGTATCTCCCCTATGTACCCCTTCGTTGATGGTGAGATTCGC TACGCCGTTCGTCACGAGTATGCCCAGACTGCCGTCGACGTGATTGCCCGTCGCACTCGTCTGGCTTTCCTGAAC GCCGAGGCCGCCCTTGAATCCCTCCCCACTGTGATTGACACAATGGCCGAGGAGTTGAAGTGGACCAACGCCCGT AAGGATCTCGAGTGGAAGGATTCCTTGACTTTCCTTTCATCCATGGGTCTGCCTAAGAGCTTCATGGGCCTGTCG CGTCATGATGTCCAGAATGGCCGTGTTACGCAGGTTGATGATGCCGAGCGTGCGACTTTCTCCCGTAAAGAACCC CCCGCGGATATGATTGAGAGTGACGTTCGTGCTACTATTGAACCCCCTGCCGCAACACCCGCGCTCGGCTAG |
| Gene | >Pro_DTO377G3_2|g8921.t1 ATGGCCGCTCGGCACTCGCGCAAGTTTTTGCGACCTCTCCTCTACACATCGGCGGCCGCCGCCGCAGGAGCAGGT GTTATCTACATTTCTTACCGTCCGCGAAATATTCCAGGCCTCGAAGCCCCTGCCGTTCCTCCGCCAGGTTACTAC AAAGGCAAGCTGGTCCCGCCCAGTTTCCCTTCCATCAAGTCTCGCCTCGAACAGATTGAGGACCTCAAGCGCAGT GAGGAGGAGGAGGAATATGATCTGCTTGTCATTGGTGCCGGAGCCACTGGAGCCGGTATCGCATTAGATGCCGCC ACACGAGGCCTGAAGGTCGCGGTGGTGGAGAGAGATGATTTCAGTTCGGGTACTAGTAGTAAGAGTACCAAGCTG GTACACGGTGGTGTCCGTTACCTTGAAAAGGCCGTGTGGGAGTTGGACTACAACCAGTGAGATTGTCCTTTCTTC CTCGGAAAGAGATGAGGTCGGAATGACCGCATCCCCGCGCATCCCTTCTAACAATCGCATCGCAGATATGCGCTA GTCAAGGAGGCTCTCAGAGAGCGCAAGTACTTCCTAAACACAGCTCCCCATCTGTCATCATGGCTGCCAATCATG GTGCCTGTTCAGAAATGGTGGCAGGCTCCGTATTTCTGGGCTGGCACCAAGGCCTATGACTTCTTGGCTGGTTCC GAGGGCATTGAGACCTCGTACTTCCTCACCAAGAGTAAGGCCATTGATGCGTTCCCCATGCTGAAGCGTGACAAC ATCATTGGAGCAATGGTGTACTATGGTGAGTAGCCAACACGGACCCCGCAAATGATCTAGGCTAATTCCCGATCA GATGGTGCTCACAACGACTCCCGCATGAACGTCTCCCTCGCTATGACCGCTGCGCTCTACGGTACCACTGTCGTG AACCACTTGGAGGTCACCGGACTGAACAAGGATGCATCCGGCAGGCTGTGCGGTGCGCGCGCCAAGGACATCGTC GCAGAGAAGAACGGCGAGGTCGCCAAGGAGTTCAACATTCGCGCCAAGGGTGTCATCAACGCCACTGGTCCCTTC TCTGATTCCATCCGCAAGATGGATGAGCCCAATGTCAAGGAGATTGTGGCCCCCAGTGCTGGTGTTCACATCATC CTGCCCGGTTACTTCAGCCCCTCAAACATGGGTCTCATTGACCCTTCCACCTCGGATGGACGTGTGATTTTCTTC CTGCCGTGGCAGGGTAACACCATCGCCGGTACCACTGACCAGCCCTGTGAGATTGAGGCTCAGCCCCAGCCCACT GAGAAGGATATAAACTGGATTCTTTCGGAGATTCGTGGCTACATCGCCCCCGATATCACCGTCGACCGAAGCGAC GTCCTTGCTGCCTGGTCTGGCATCCGTCCCTTGGTGCGCGATCCCAAGGTGAAGAACTCGGAGGCTCTCGTCCGC AACCACCTGGTGACCGTCTCTCAGTCTGGACTGTTGACTTGCGCCGGTGGTAAGTGGACTACTTACCGCCAGATG GCCGAGGAGGCCGTGGACGAGGCAGTCAAATCGTTCAAGCTCAAGCCCCGCCAGCTCAACAGCCTTCCCGACATC AGTGGTGTCGGAGGCAGTGATCTGGTTGCTGACGGTGCCGTTCTCGACGGTAGCTGCCAGACCCACCAGGTGCGC CTCATTGGTGCCCACGGTTACTCCAAGACCCTCTTCATCAACCTTATCCAGCACTTCGGTCTCGAGACCGATGTG GCCAAGCACCTCACCGAGTCGTACGGTGATCGCTCATGGCAGGTCGCTGCCTTGTCTTCCCCTACCAGCGAACGT TTCCCCGTGCGCGGCTGCCGTATCTCCCCTATGTACCCCTTCGTTGATGGTGAGATTCGCTACGCCGTTCGTCAC GAGTATGCCCAGACTGCCGTCGACGTGATTGCCCGTCGCACTCGTCTGGCTTTCCTGAACGCCGAGGCCGCCCTT GAATCCCTCCCCACTGTGATTGACACAATGGCCGAGGAGTTGAAGTGGACCAACGCCCGTAAGGATCTCGAGTGG AAGGATTCCTTGACTTTCCTTTCATCCATGGGTCTGCCTAAGAGCTTCATGGGCCTGTCGCGTCATGATGTCCAG AATGGCCGTGTTACGCAGGTTGATGATGCCGAGCGTGCGACTTTCTCCCGTAAAGGTATGTTTGTAACAAACATT TCGATGAACCACAGTGCTGACCATTCTAGAACCCCCCGCGGATATGATTGAGAGTGACGTTCGTGCTACTATTGA ACCCCCTGCCGCAACACCCGCGCTCGGCTAG |