© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8886.t1 |
| Gene name | |
| Location | scaffold_38:108911..110842 |
| Strand | + |
| Gene length (bp) | 1931 |
| Transcript length (bp) | 1683 |
| Coding sequence length (bp) | 1683 |
| Protein length (aa) | 561 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 9.1E-10 | 46 | 335 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 3.2E-09 | 327 | 469 |
| PF03209 | PUCC | PUCC protein | 3.5E-06 | 385 | 471 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 54 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 33 | 55 | 22 |
| 2 | 75 | 94 | 19 |
| 3 | 101 | 120 | 19 |
| 4 | 130 | 152 | 22 |
| 5 | 165 | 184 | 19 |
| 6 | 194 | 216 | 22 |
| 7 | 249 | 271 | 22 |
| 8 | 276 | 298 | 22 |
| 9 | 319 | 341 | 22 |
| 10 | 356 | 378 | 22 |
| 11 | 385 | 403 | 18 |
| 12 | 413 | 435 | 22 |
| 13 | 448 | 470 | 22 |
| 14 | 524 | 542 | 18 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 14.73 | 7.14 | 22.31 |
| 5d_25C | Five days - 25 degrees Celsius | 5.86 | 2.03 | 9.70 |
| 7d_25C | Seven days - 25 degrees Celsius | 4.08 | 1.25 | 6.90 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.42 | 0.40 | 4.44 |
| 7d_15C | Seven days - 15 degrees Celsius | 2.05 | 0.19 | 3.91 |
| 7d_30C | Seven days - 30 degrees Celsius | 18.39 | 8.78 | 28.00 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.005626 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.529240 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.387527 | no |
| 5d_25C | 7d_15C | 0.022165 | yes |
| 5d_25C | 7d_30C | 0.001278 | yes |
| 5d_25C | 10d_25C | 0.029538 | yes |
| 7d_25C | 7d_15C | 0.151283 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.227114 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.807241 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8886.t1 MDDLPDDKASLSGRDSNEFQGGVQRVRAITSAWSTKTLILMFILLYLVSFVDALLSSVETALNPYITSSFHKHGL LTVVSVVSTILGGSSKLTLAKIIDIWGRVEGFLIMLVLVTIGLIMKATCKSMEMYTAAHTLYWVGHIGLTYVVEI MLADMTSLKNRMVMIGLNGTPGIASTFAGPEIATLFYTNLDFHWAFGSFAIMQVGVCIPVAAVMLFMQRRAEKSG TLEKTRSGRSWWQSIAHYLIEFDVVGIILITAAFSLILIPFSIASYGPKGWASGYIIAMEVLGVACVPAFYIWER YCSPVQFLPWKYLKEPTMIGSCMLYGVMFVSCFTWNSYFGSYLQVVNRLDITTANYVLNAFSLTSFIFSPIFGLI ISWTGDFKWTAMAGVPIFCLGTALLVPFRAPDTHVGLLTMIQILVGLGSCLFTVCGQIAIMAMVTHQEIAVVMAI WGLFGSIGAAVGSAIAGGMWNNILEKELYNRLPQESKHLSKSIFASLVTQISYADGTKERDAIVGAYADVQRKMA IVGVCFVPLCILCTWFWRNVNVKKLEKEQTAGNVW* |
| Coding | >Pro_DTO377G3_2|g8886.t1 ATGGATGATTTACCTGACGACAAGGCAAGTCTTTCTGGTCGAGACTCGAACGAGTTCCAGGGTGGCGTGCAACGA GTAAGAGCGATTACATCGGCATGGTCGACCAAGACGCTCATTCTCATGTTCATTCTGCTCTACCTTGTGTCCTTC GTAGATGCACTACTAAGCTCAGTCGAAACCGCACTGAACCCCTACATAACATCCTCATTCCACAAACATGGCCTC TTGACAGTCGTCAGCGTCGTTTCAACCATCCTGGGCGGTTCATCCAAGTTAACACTAGCCAAGATCATCGACATA TGGGGCCGCGTGGAGGGATTCCTAATTATGCTAGTTCTCGTTACGATCGGTCTAATCATGAAGGCTACGTGCAAG AGTATGGAAATGTACACCGCAGCACACACTCTATACTGGGTAGGCCACATAGGCCTGACCTACGTTGTGGAAATC ATGCTGGCGGACATGACCTCACTCAAGAACCGGATGGTCATGATCGGCCTGAACGGTACACCCGGTATCGCTAGT ACCTTTGCAGGCCCGGAGATTGCCACACTCTTCTACACCAACCTCGACTTCCATTGGGCATTTGGTTCGTTTGCT ATCATGCAGGTTGGGGTTTGTATACCTGTCGCTGCGGTGATGCTGTTTATGCAACGTCGGGCTGAAAAGAGCGGT ACTCTTGAGAAGACTCGTTCTGGACGTTCCTGGTGGCAGTCAATCGCGCATTATCTCATCGAGTTTGATGTTGTC GGGATCATCTTGATCACAGCCGCATTCTCTTTAATCCTGATCCCGTTCAGCATCGCCTCCTACGGCCCTAAGGGG TGGGCGAGCGGATACATCATCGCGATGGAGGTCCTCGGTGTAGCGTGCGTGCCCGCATTCTACATCTGGGAACGA TACTGTTCACCGGTGCAATTCCTCCCGTGGAAGTATCTGAAAGAACCAACAATGATTGGTTCGTGCATGCTGTAC GGCGTGATGTTCGTCTCCTGCTTTACCTGGAACAGCTACTTCGGCTCATACCTACAAGTCGTCAACAGACTCGAC ATCACAACAGCCAACTACGTGCTCAACGCTTTCTCTCTGACCTCTTTCATCTTCAGCCCCATCTTCGGCCTAATA ATAAGCTGGACCGGCGACTTCAAATGGACCGCCATGGCTGGCGTACCAATCTTCTGCCTAGGAACAGCTCTGCTA GTCCCGTTCCGCGCGCCAGACACACACGTGGGGCTACTAACAATGATCCAAATCCTCGTGGGACTCGGCAGCTGT CTGTTCACTGTGTGCGGACAGATAGCGATAATGGCGATGGTAACGCACCAAGAGATCGCAGTTGTAATGGCGATC TGGGGATTATTTGGGTCGATTGGAGCGGCGGTGGGATCTGCCATCGCAGGCGGGATGTGGAATAATATCCTCGAG AAAGAGTTGTATAACCGGCTGCCGCAGGAGAGCAAGCACCTTTCGAAGAGTATCTTTGCCAGTTTGGTGACGCAG ATTTCGTACGCGGATGGGACGAAGGAGCGCGATGCTATTGTTGGGGCTTATGCTGATGTTCAGAGGAAGATGGCG ATTGTTGGGGTTTGTTTTGTGCCGCTTTGTATTCTTTGTACTTGGTTTTGGAGGAATGTCAATGTTAAGAAGTTG GAAAAGGAGCAGACGGCTGGGAATGTGTGGTAG |
| Transcript | >Pro_DTO377G3_2|g8886.t1 ATGGATGATTTACCTGACGACAAGGCAAGTCTTTCTGGTCGAGACTCGAACGAGTTCCAGGGTGGCGTGCAACGA GTAAGAGCGATTACATCGGCATGGTCGACCAAGACGCTCATTCTCATGTTCATTCTGCTCTACCTTGTGTCCTTC GTAGATGCACTACTAAGCTCAGTCGAAACCGCACTGAACCCCTACATAACATCCTCATTCCACAAACATGGCCTC TTGACAGTCGTCAGCGTCGTTTCAACCATCCTGGGCGGTTCATCCAAGTTAACACTAGCCAAGATCATCGACATA TGGGGCCGCGTGGAGGGATTCCTAATTATGCTAGTTCTCGTTACGATCGGTCTAATCATGAAGGCTACGTGCAAG AGTATGGAAATGTACACCGCAGCACACACTCTATACTGGGTAGGCCACATAGGCCTGACCTACGTTGTGGAAATC ATGCTGGCGGACATGACCTCACTCAAGAACCGGATGGTCATGATCGGCCTGAACGGTACACCCGGTATCGCTAGT ACCTTTGCAGGCCCGGAGATTGCCACACTCTTCTACACCAACCTCGACTTCCATTGGGCATTTGGTTCGTTTGCT ATCATGCAGGTTGGGGTTTGTATACCTGTCGCTGCGGTGATGCTGTTTATGCAACGTCGGGCTGAAAAGAGCGGT ACTCTTGAGAAGACTCGTTCTGGACGTTCCTGGTGGCAGTCAATCGCGCATTATCTCATCGAGTTTGATGTTGTC GGGATCATCTTGATCACAGCCGCATTCTCTTTAATCCTGATCCCGTTCAGCATCGCCTCCTACGGCCCTAAGGGG TGGGCGAGCGGATACATCATCGCGATGGAGGTCCTCGGTGTAGCGTGCGTGCCCGCATTCTACATCTGGGAACGA TACTGTTCACCGGTGCAATTCCTCCCGTGGAAGTATCTGAAAGAACCAACAATGATTGGTTCGTGCATGCTGTAC GGCGTGATGTTCGTCTCCTGCTTTACCTGGAACAGCTACTTCGGCTCATACCTACAAGTCGTCAACAGACTCGAC ATCACAACAGCCAACTACGTGCTCAACGCTTTCTCTCTGACCTCTTTCATCTTCAGCCCCATCTTCGGCCTAATA ATAAGCTGGACCGGCGACTTCAAATGGACCGCCATGGCTGGCGTACCAATCTTCTGCCTAGGAACAGCTCTGCTA GTCCCGTTCCGCGCGCCAGACACACACGTGGGGCTACTAACAATGATCCAAATCCTCGTGGGACTCGGCAGCTGT CTGTTCACTGTGTGCGGACAGATAGCGATAATGGCGATGGTAACGCACCAAGAGATCGCAGTTGTAATGGCGATC TGGGGATTATTTGGGTCGATTGGAGCGGCGGTGGGATCTGCCATCGCAGGCGGGATGTGGAATAATATCCTCGAG AAAGAGTTGTATAACCGGCTGCCGCAGGAGAGCAAGCACCTTTCGAAGAGTATCTTTGCCAGTTTGGTGACGCAG ATTTCGTACGCGGATGGGACGAAGGAGCGCGATGCTATTGTTGGGGCTTATGCTGATGTTCAGAGGAAGATGGCG ATTGTTGGGGTTTGTTTTGTGCCGCTTTGTATTCTTTGTACTTGGTTTTGGAGGAATGTCAATGTTAAGAAGTTG GAAAAGGAGCAGACGGCTGGGAATGTGTGGTAG |
| Gene | >Pro_DTO377G3_2|g8886.t1 ATGGATGATTTACCTGACGACAAGGCAAGTCTTTCTGGTCGAGACTCGAACGAGTTCCAGGGTGGCGTGCAACGA GTAAGAGCGATTACATCGGCATGGTCGACCAAGACGCTCATTCTCATGTTCATTCTGTAAGTCTGGATCTCAATA AACAGAAAGTAAACTAATATCCCGCCGAAACACAGGCTCTACCTTGTGTCCTTCGTAGATGCACTACTAAGCTCA GTCGAAACCGCACTGAACCCCTACATAACATCCTCATTCCACAAACATGGCCTCTTGACAGTCGTCAGCGTCGTT TCAACCATCCTGGGCGGTTCATCCAAGTTAACACTAGCCAAGATCATCGACATATGGGGCCGCGTGGAGGGATTC CTAATTATGCTAGTTCTCGTTACGATCGGTCTAATCATGAAGGCTACGTGCAAGAGTATGGAAATGTACACCGCA GCACACACTCTATACTGGGTAGGCCACATAGGCCTGACCTACGTTGTGGAAATCATGCTGGCGGACATGACCTCA CTCAAGAACCGGATGGTCATGATCGGCCTGAACGGTACACCCGGTATCGCTAGTACCTTTGCAGGCCCGGAGATT GCCACACTCTTCTACACCAACCTCGACTTCCATTGGGCATTTGGTTCGTTTGCTATCATGCAGGTTGGGGTTTGT ATACCTGTCGCTGCGGTGATGCTGTTTATGCAACGTCGGGCTGAAAAGAGCGGTACTCTTGAGAAGACTCGTTCT GGACGTTCCTGGTGGCAGTCAATCGCGCATTATCTCATCGAGTTTGATGGTACGTATTTCCATATATGCAGGTCT TTTTGAATTTGACATGTGACTAAAGAGCTGTTTTACCCAGTTGTCGGGATCATCTTGATCACAGCCGCATTCTCT TTAATCCTGATCCCGTTCAGCATCGCCTCCTACGGCCCTAAGGGGTGGGCGAGCGGATACATCATCGCGATGGAG GTCCTCGGTGTAGCGTGCGTGCCCGCATTCTACATCTGGGAACGATACTGTTCACCGGTGCAATTCCTCCCGTGG AAGTATCTGAAAGAACCAACAATGATTGGTTCGTGCATGCTGTACGGCGTGATGTTCGTCTCCTGCTTGTGAGTG CCAGTCTCTTCCAACGCTTAGAATCAAAGGCACAGCCTAACGCTTGCAAAACAGTACCTGGAACAGCTACTTCGG CTCATACCTACAAGTCGTCAACAGACTCGACATCACAACAGCCAACTACGTGCTCAACGCTTTCTCTCTGACCTC TTTCATCTTCAGCCCCATCTTCGGCCTGTAAGCACACCTCACCACCCCACACATACCTCTGTACAAAGTCTAACA AACTTTCTTCGCTTCTCAGAATAATAAGCTGGACCGGCGACTTCAAATGGACCGCCATGGCTGGCGTACCAATCT TCTGCCTAGGAACAGCTCTGCTAGTCCCGTTCCGCGCGCCAGACACACACGTGGGGCTACTAACAATGATCCAAA TCCTCGTGGGACTCGGCAGCTGTCTGTTCACTGTGTGCGGACAGATAGCGATAATGGCGATGGTAACGCACCAAG AGATCGCAGTTGTAATGGCGATCTGGGGATTATTTGGGTCGATTGGAGCGGCGGTGGGATCTGCCATCGCAGGCG GGATGTGGAATAATATCCTCGAGAAAGAGTTGTATAACCGGCTGCCGCAGGAGAGCAAGCACCTTTCGAAGAGTA TCTTTGCCAGTTTGGTGACGCAGATTTCGTACGCGGATGGGACGAAGGAGCGCGATGCTATTGTTGGGGCTTATG CTGATGTTCAGAGGAAGATGGCGATTGTTGGGGTTTGTTTTGTGCCGCTTTGTATTCTTTGTACTTGGTTTTGGA GGAATGTCAATGTTAAGAAGTTGGAAAAGGAGCAGACGGCTGGGAATGTGTGGTAG |