Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g8885.t1
Gene name
Locationscaffold_38:106598..107100
Strand-
Gene length (bp)502
Transcript length (bp)435
Coding sequence length (bp)435
Protein length (aa) 145

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 24.53 6.68 42.38
5d_25C Five days - 25 degrees Celsius 29.27 9.12 49.43
7d_25C Seven days - 25 degrees Celsius 32.87 8.88 56.85
10d_25C Ten days - 25 degrees Celsius 24.94 6.62 43.25
7d_15C Seven days - 15 degrees Celsius 64.09 20.43 107.75
7d_30C Seven days - 30 degrees Celsius 112.90 54.36 171.44

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.736285 no
3d_25C 7d_25C 0.542103 no
3d_25C 7d_15C 0.008133 yes
3d_25C 7d_30C 0.000700 yes
3d_25C 10d_25C 0.981280 no
5d_25C 7d_25C 0.833960 no
5d_25C 7d_15C 0.028409 yes
5d_25C 7d_30C 0.000700 yes
5d_25C 10d_25C 0.758873 no
7d_25C 7d_15C 0.075327 no
7d_25C 7d_30C 0.000700 yes
7d_25C 10d_25C 0.557696 no
7d_15C 7d_30C 0.082934 no
7d_15C 10d_25C 0.004840 yes
7d_30C 10d_25C 0.000700 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g8885.t1
MKITVVSPLLVAGAIAFPIIERDSSIQISDFWARASAGSSATMHFSLTDPNYPDDTPTDCNLIWSYGSSPKENAR
CNNSQYYIHFPDGAVDFNLFTLGLERVSGPIAENGHVLLRSGTQWSCVDNPESGVELSCSYDGVLGMSV*
Coding >Pro_DTO377G3_2|g8885.t1
ATGAAGATTACTGTTGTCTCCCCTCTTCTGGTTGCCGGCGCCATCGCCTTCCCCATCATCGAGCGAGACAGCTCT
ATCCAGATCAGTGACTTCTGGGCCAGAGCAAGCGCCGGCTCCTCTGCTACAATGCATTTCAGCCTGACTGATCCA
AACTACCCCGACGACACCCCAACCGACTGCAACCTGATTTGGTCATACGGATCTTCGCCAAAGGAAAATGCCCGA
TGCAACAACAGTCAATATTACATACACTTCCCCGATGGTGCCGTTGACTTCAATCTGTTTACACTGGGACTTGAG
AGGGTCTCAGGCCCGATTGCTGAGAACGGTCATGTCTTACTGAGATCCGGTACGCAGTGGTCGTGTGTGGACAAT
CCGGAGAGCGGCGTTGAGCTAAGCTGCTCTTATGATGGTGTCCTTGGTATGTCTGTGTGA
Transcript >Pro_DTO377G3_2|g8885.t1
ATGAAGATTACTGTTGTCTCCCCTCTTCTGGTTGCCGGCGCCATCGCCTTCCCCATCATCGAGCGAGACAGCTCT
ATCCAGATCAGTGACTTCTGGGCCAGAGCAAGCGCCGGCTCCTCTGCTACAATGCATTTCAGCCTGACTGATCCA
AACTACCCCGACGACACCCCAACCGACTGCAACCTGATTTGGTCATACGGATCTTCGCCAAAGGAAAATGCCCGA
TGCAACAACAGTCAATATTACATACACTTCCCCGATGGTGCCGTTGACTTCAATCTGTTTACACTGGGACTTGAG
AGGGTCTCAGGCCCGATTGCTGAGAACGGTCATGTCTTACTGAGATCCGGTACGCAGTGGTCGTGTGTGGACAAT
CCGGAGAGCGGCGTTGAGCTAAGCTGCTCTTATGATGGTGTCCTTGGTATGTCTGTGTGA
Gene >Pro_DTO377G3_2|g8885.t1
ATGAAGATTACTGTTGTCTCCCCTCTTCTGGTTGCCGGCGCCATCGCCTTCCCCATCATCGAGCGAGACAGCTCT
ATCCAGATCAGTGACTTCTGGGCCAGAGCAAGCGCCGGCTCCTCTGCTACAATGCATTTCAGCCTGACTGATCCA
AACTACCCCGACGACACCCCAACCGACTGCAACCTGATTTGGTGAGTCTAATTTGTCATCAAGATCTATTGACAA
TGGCAGACGCTAACTGATACCGTTTGATGCCAGGTCATACGGATCTTCGCCAAAGGAAAATGCCCGATGCAACAA
CAGTCAATATTACATACACTTCCCCGATGGTGCCGTTGACTTCAATCTGTTTACACTGGGACTTGAGAGGGTCTC
AGGCCCGATTGCTGAGAACGGTCATGTCTTACTGAGATCCGGTACGCAGTGGTCGTGTGTGGACAATCCGGAGAG
CGGCGTTGAGCTAAGCTGCTCTTATGATGGTGTCCTTGGTATGTCTGTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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