© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8883.t1 |
| Gene name | |
| Location | scaffold_38:100422..102336 |
| Strand | + |
| Gene length (bp) | 1914 |
| Transcript length (bp) | 1452 |
| Coding sequence length (bp) | 1452 |
| Protein length (aa) | 484 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 5.0E-21 | 55 | 430 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 66 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 54 | 76 | 22 |
| 2 | 91 | 113 | 22 |
| 3 | 120 | 137 | 17 |
| 4 | 147 | 166 | 19 |
| 5 | 179 | 201 | 22 |
| 6 | 206 | 228 | 22 |
| 7 | 276 | 298 | 22 |
| 8 | 318 | 340 | 22 |
| 9 | 353 | 375 | 22 |
| 10 | 380 | 402 | 22 |
| 11 | 415 | 437 | 22 |
| 12 | 447 | 469 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 9.07 | 3.55 | 14.60 |
| 5d_25C | Five days - 25 degrees Celsius | 7.71 | 2.91 | 12.52 |
| 7d_25C | Seven days - 25 degrees Celsius | 14.91 | 6.62 | 23.20 |
| 10d_25C | Ten days - 25 degrees Celsius | 8.07 | 3.14 | 13.00 |
| 7d_15C | Seven days - 15 degrees Celsius | 5.89 | 1.55 | 10.24 |
| 7d_30C | Seven days - 30 degrees Celsius | 49.93 | 28.28 | 71.58 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.725924 | no |
| 3d_25C | 7d_25C | 0.133708 | no |
| 3d_25C | 7d_15C | 0.305275 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.801711 | no |
| 5d_25C | 7d_25C | 0.045183 | yes |
| 5d_25C | 7d_15C | 0.568847 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.932581 | no |
| 7d_25C | 7d_15C | 0.013810 | yes |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.046552 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.476194 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8883.t1 MEKPSPVYFTQEMAASASSSLETHELEECDFDSDLEVKDPLNPRNWSSARKTMLFVSLMTSSLLADGAMVWGGTL VTEQAMDWNITIAHSATSMNYGILLQGFGGIFAVPLIEAYGRLPIWLWPQVITMFMVLGATLSNDWSTFTTFRSL QGLFGTVPQVIGLPIIHDMYTSAEWPRMINIWGTAFLVGPFLGPAIAGYIGAGSDWRISFGVLTAIYGLSTVMVI LFGYETYYKPGRMNNQSRLASYFGIGNTLLPKVSTLIYWSRTVVVYVFKFPLLMTGIAILVTFTWPIGITTTIDS FLHSPPYLFDTIEASSMRFAGVIGALCGWAFGHFFNGWIFKRHSSNWRTELRLHGVWFPIGSMASGLLTYGLTMH FGKHWIGIAIGWIMVNIGMVATVVAISAYTLEKYPEQATCVSAILNMWRTCGGFAVGYFQPAWIQRDGLGLVFGI QAAILCVAVALTITPVLLWERKRRLRVDAEADP* |
| Coding | >Pro_DTO377G3_2|g8883.t1 ATGGAGAAACCCTCCCCTGTTTACTTTACGCAGGAGATGGCAGCTAGTGCGTCGTCGTCGCTTGAGACACATGAA CTGGAGGAATGCGATTTCGATTCGGACCTCGAGGTCAAGGATCCCTTGAACCCGAGAAATTGGTCATCGGCGCGG AAGACCATGCTCTTTGTGTCGCTGATGACGAGCTCGTTGTTGGCAGATGGGGCTATGGTATGGGGTGGAACCCTG GTCACGGAGCAGGCCATGGATTGGAATATTACCATCGCTCATTCGGCGACTAGTATGAATTATGGCATCCTGCTG CAGGGGTTTGGCGGAATTTTTGCTGTTCCGCTCATTGAGGCGTATGGGCGTTTGCCGATCTGGCTGTGGCCTCAG GTGATCACTATGTTTATGGTGCTGGGTGCCACCCTCTCCAATGATTGGTCTACCTTCACGACCTTCCGCTCTTTG CAGGGTCTATTTGGCACAGTGCCTCAGGTAATTGGGCTCCCGATCATTCATGATATGTATACCTCGGCTGAATGG CCGCGGATGATCAATATTTGGGGCACCGCCTTCCTCGTCGGGCCATTCCTTGGTCCTGCGATAGCTGGATACATT GGTGCCGGGTCAGACTGGCGTATTTCCTTCGGGGTCCTGACAGCCATCTATGGCCTGTCCACTGTCATGGTGATT CTCTTCGGCTATGAGACATATTACAAGCCTGGACGAATGAACAATCAGTCACGACTCGCGTCTTATTTTGGCATT GGAAATACCCTGCTTCCCAAGGTATCGACGTTGATATATTGGAGCCGAACAGTCGTGGTCTATGTGTTCAAGTTC CCGTTGCTGATGACTGGAATCGCTATCTTGGTAACATTCACTTGGCCGATTGGAATCACAACCACCATCGATAGC TTCCTGCACAGCCCTCCATATTTGTTTGACACGATCGAGGCATCATCAATGCGATTCGCCGGTGTGATTGGAGCT TTATGTGGCTGGGCATTTGGCCACTTCTTCAACGGCTGGATCTTCAAGCGTCATAGCTCAAACTGGCGAACCGAG CTCCGCCTCCACGGTGTCTGGTTCCCGATAGGTAGTATGGCAAGCGGTCTCCTCACCTACGGACTAACCATGCAC TTTGGCAAGCACTGGATTGGGATAGCCATTGGGTGGATCATGGTGAACATCGGCATGGTAGCCACGGTTGTTGCC ATCTCGGCCTATACATTGGAAAAATACCCGGAGCAGGCGACCTGTGTCTCGGCCATTCTGAATATGTGGCGCACC TGCGGCGGGTTCGCAGTGGGATACTTCCAACCTGCATGGATTCAGCGCGATGGCCTCGGACTGGTCTTTGGCATT CAGGCTGCTATTCTGTGTGTGGCTGTTGCTTTGACTATCACTCCTGTGTTGTTGTGGGAGCGGAAAAGGCGGCTG CGAGTTGATGCTGAAGCTGATCCTTGA |
| Transcript | >Pro_DTO377G3_2|g8883.t1 ATGGAGAAACCCTCCCCTGTTTACTTTACGCAGGAGATGGCAGCTAGTGCGTCGTCGTCGCTTGAGACACATGAA CTGGAGGAATGCGATTTCGATTCGGACCTCGAGGTCAAGGATCCCTTGAACCCGAGAAATTGGTCATCGGCGCGG AAGACCATGCTCTTTGTGTCGCTGATGACGAGCTCGTTGTTGGCAGATGGGGCTATGGTATGGGGTGGAACCCTG GTCACGGAGCAGGCCATGGATTGGAATATTACCATCGCTCATTCGGCGACTAGTATGAATTATGGCATCCTGCTG CAGGGGTTTGGCGGAATTTTTGCTGTTCCGCTCATTGAGGCGTATGGGCGTTTGCCGATCTGGCTGTGGCCTCAG GTGATCACTATGTTTATGGTGCTGGGTGCCACCCTCTCCAATGATTGGTCTACCTTCACGACCTTCCGCTCTTTG CAGGGTCTATTTGGCACAGTGCCTCAGGTAATTGGGCTCCCGATCATTCATGATATGTATACCTCGGCTGAATGG CCGCGGATGATCAATATTTGGGGCACCGCCTTCCTCGTCGGGCCATTCCTTGGTCCTGCGATAGCTGGATACATT GGTGCCGGGTCAGACTGGCGTATTTCCTTCGGGGTCCTGACAGCCATCTATGGCCTGTCCACTGTCATGGTGATT CTCTTCGGCTATGAGACATATTACAAGCCTGGACGAATGAACAATCAGTCACGACTCGCGTCTTATTTTGGCATT GGAAATACCCTGCTTCCCAAGGTATCGACGTTGATATATTGGAGCCGAACAGTCGTGGTCTATGTGTTCAAGTTC CCGTTGCTGATGACTGGAATCGCTATCTTGGTAACATTCACTTGGCCGATTGGAATCACAACCACCATCGATAGC TTCCTGCACAGCCCTCCATATTTGTTTGACACGATCGAGGCATCATCAATGCGATTCGCCGGTGTGATTGGAGCT TTATGTGGCTGGGCATTTGGCCACTTCTTCAACGGCTGGATCTTCAAGCGTCATAGCTCAAACTGGCGAACCGAG CTCCGCCTCCACGGTGTCTGGTTCCCGATAGGTAGTATGGCAAGCGGTCTCCTCACCTACGGACTAACCATGCAC TTTGGCAAGCACTGGATTGGGATAGCCATTGGGTGGATCATGGTGAACATCGGCATGGTAGCCACGGTTGTTGCC ATCTCGGCCTATACATTGGAAAAATACCCGGAGCAGGCGACCTGTGTCTCGGCCATTCTGAATATGTGGCGCACC TGCGGCGGGTTCGCAGTGGGATACTTCCAACCTGCATGGATTCAGCGCGATGGCCTCGGACTGGTCTTTGGCATT CAGGCTGCTATTCTGTGTGTGGCTGTTGCTTTGACTATCACTCCTGTGTTGTTGTGGGAGCGGAAAAGGCGGCTG CGAGTTGATGCTGAAGCTGATCCTTGA |
| Gene | >Pro_DTO377G3_2|g8883.t1 ATGGAGAAACCCTCCCCTGTTTACTTTACGCAGGAGATGGCAGCTAGTGCGTCGTCGTCGCTTGAGACACATGAA CTGGAGGAATGCGATTTCGATTCGGACCTCGAGGTCAAGGATCCCTTGAACCCGAGAAATTGGTCATCGGCGCGG AAGACCATGCTCTTTGTGTCGCTGATGACGAGCTCGTTGTTGGCAGATGGGTAAGTATACCCGGTCGATTGTGAA ACCCATCGCGGCTACCGGCTGAGATGTGTATGCATAATAACTTTCTGACTAAATCTTGCAGGGCTATGGTATGGG GTGGAACCCTGGTCACGGAGCAGGCCATGGATTGGAATATTACCATCGCTCATTCGGCGACTAGTATGAATTATG GCATCCTGCTGCAGGGGTTTGGCGGAATTTTTGCTGTTCCGCTCATTGAGGCGTATGGGCGGTGAGTTGGGTCTT TTTCGCCCACGTTGGCTGTCACACTGACAGCTGAATGTAGTTTGCCGATCTGGCTGTGGCCTCAGGTGATCACTA TGTTTATGGTGCTGGGTGCCACCCTCTCCAATGATTGGTCTACCTTCACGACCTTCCGCTCTTTGCAGGGTCTAT TTGGCACAGTGCCTCAGGTAATTGGGCTCCCGATCATTCATGATATGTATACCTCGGCTGGTAAGTATTTTCTGT GGGATTGTCTCGAGTACCTTATGCTGATCTGACAACAGAATGGCCGCGGATGATCAATATTTGGTAGGAGACTTG CCACTCAAATTTAGGGTAGCACTGACTTGAGCATAGGGGCACCGCCTTCCTCGTCGGGCCATTCCTTGGTCCTGC GATAGCTGGATACATTGGTGCCGGGTCAGACTGGCGTATTTCCTTCGGGGTCCTGACAGCCATCTATGGCCTGTC CACTGTCATGGTGATTCTCTTCGGCTATGAGACATATTACAAGCCTGGACGAATGAACAATCAGTCACGACTCGC GTCTTATTTTGGCATTGGAAATACCCTGCTTCCCAAGGTATCGACGTTGATATATTGGAGCCGAACAGTCGTGGT CTATGTGTTCAAGTTCCCGTTGCTGATGACTGGTGCGTATGGTCGACCTAGCTTGCTATGACATTCACTAACCAA GCCTTTGTCGATAGGAATCGCTATCTTGGTAACATTCACTTGGCCGATTGGTAAGTAACCACCATCACACCGTTC TTTCACCTGCTGACTGTGCAGGAATCACAACCACCATCGATAGCTTCCTGCACAGCCCTCCATATTTGTTTGACA CGATCGAGGCATCATCAATGCGATTCGCCGGTGTGATTGGAGCTTTATGTGGTATGCATCTTCAAAGCACCTCTC TCTCTCTCTCTCTCTCCGGATTCTTACCATCTCACAGGCTGGGCATTTGGCCACTTCTTCAACGGCTGGATCTTC AAGCGTCATAGCTCAAACTGGCGAACCGAGCTCCGCCTCCACGGTGTCTGGTTCCCGATAGGTAGTATGGCAAGC GGTCTCCTCACCTACGGACTAACCATGCACTTTGGCAAGCACTGGATTGGGATAGCCATTGGGTGGATCATGGTG AACATCGGCATGGTAGCCACGGTTGTGTAAGTTCCAAATCCACTCTCCTGAGTACTGTCGTATGTCTAACATCCA TTGCTCAGTGCCATCTCGGCCTATACATTGGAAAAATACCCGGAGCAGGCGACCTGTGTCTCGGCCATTCTGAAT ATGTGGCGCACCTGCGGCGGGTTCGCAGTGGGATACTTCCAACCTGCATGGATTCAGCGCGATGGCCTCGGACTG GTCTTTGGCATTCAGGCTGCTATTCTGTGTGTGGCTGTTGCTTTGACTATCACTCCTGTGTTGTTGTGGGAGCGG AAAAGGCGGCTGCGAGTTGATGCTGAAGCTGATCCTTGA |