© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8858.t1 |
| Gene name | |
| Location | scaffold_38:31632..36025 |
| Strand | - |
| Gene length (bp) | 4393 |
| Transcript length (bp) | 2163 |
| Coding sequence length (bp) | 2163 |
| Protein length (aa) | 721 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01544 | CorA | CorA-like Mg2+ transporter protein | 5.1E-09 | 196 | 365 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0030001 | metal ion transport | Yes |
| GO:0046873 | metal ion transmembrane transporter activity | Yes |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0006812 | cation transport | No |
| GO:0006811 | ion transport | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 14 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 314 | 336 | 22 |
| 2 | 351 | 373 | 22 |
| 3 | 453 | 475 | 22 |
| 4 | 479 | 498 | 19 |
| 5 | 505 | 527 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 31.49 | 18.82 | 44.17 |
| 5d_25C | Five days - 25 degrees Celsius | 18.19 | 10.00 | 26.38 |
| 7d_25C | Seven days - 25 degrees Celsius | 16.58 | 8.89 | 24.28 |
| 10d_25C | Ten days - 25 degrees Celsius | 11.77 | 5.85 | 17.69 |
| 7d_15C | Seven days - 15 degrees Celsius | 15.20 | 8.01 | 22.40 |
| 7d_30C | Seven days - 30 degrees Celsius | 10.52 | 5.08 | 15.97 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.015833 | yes |
| 3d_25C | 7d_25C | 0.003197 | yes |
| 3d_25C | 7d_15C | 0.001278 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.794710 | no |
| 5d_25C | 7d_15C | 0.565784 | no |
| 5d_25C | 7d_30C | 0.033480 | yes |
| 5d_25C | 10d_25C | 0.094135 | no |
| 7d_25C | 7d_15C | 0.812363 | no |
| 7d_25C | 7d_30C | 0.088767 | no |
| 7d_25C | 10d_25C | 0.213479 | no |
| 7d_15C | 7d_30C | 0.204718 | no |
| 7d_15C | 10d_25C | 0.404126 | no |
| 7d_30C | 10d_25C | 0.767219 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8858.t1 MKQHKIQNMAGYRKRGIITLPNKSHHVIREPDMKKEVSFNQDVFNLSLALSQSRINDATELRGMVLDVDGSVKQS EIRGTRDEIAKRWGLDGRDLRNVDLVSEGIPHLLVRPSVIFISMFTLRLLVRTNGVLLFLLPIENSHVKVQDVFM TDLQGRLQPCPGSGLLSKLPFELRVVDAALASVIATLEAEHILIRREAEESLQDSTREDVVYSVLRGLQNHKKRL VAIQQRARQFRSALREILENDEDMATMFLTDREAGQPHEVDDHQEVEYLLEAYYKSTDAIAESASALLGDLERTT ETIQSILDVRRNQILVFEAQLEICMLGFAVSTFVAGLFGMNVTNFFEDSPSAFAILVGTCIIGTVTIAKVWGISK PRRKDHPLLILNWAGYTGPTILRFPASLAKPLDRSDIAPKGPDWGLRTSIHVVAGISNLGRGLDPQRARRTFAGS NKAVVPAIVLPLANIIMIAKLLLIFEIMYVTTVATTKISILLMYCRIFPTREIRIASLVLGGMTLSWLVAIILVS VFQCNPIPRAWDTRIPGKCINLKGMFIGNAVPNILTDILILSLPVKVVWGLHASLTHRLVVFTSAYRFATIFGFD PTDIAWTLGRSCTWCVVESSTGIISACMPTLRPLFMIFSSKFSSRSGTRSRTTDLDQSKGYELDNSALRPANEPR NKTRTQLEVSHADDGSEDEVPLNSIRVQQYMTWQESRGDSFRGYK* |
| Coding | >Pro_DTO377G3_2|g8858.t1 ATGAAACAACATAAGATCCAGAACATGGCCGGCTACCGCAAACGGGGAATCATCACGCTCCCCAATAAATCGCAT CATGTCATCCGGGAGCCTGACATGAAAAAAGAAGTCTCCTTCAATCAGGATGTGTTCAACTTGTCTCTTGCTCTG TCGCAAAGCCGCATAAATGATGCGACGGAGTTACGCGGCATGGTCTTGGATGTCGATGGCTCCGTCAAACAATCT GAAATTCGAGGAACTAGAGATGAGATTGCTAAACGGTGGGGATTAGATGGTCGCGATCTACGCAACGTGGATCTT GTCTCGGAAGGAATCCCGCATTTGTTGGTCCGTCCGTCTGTTATCTTCATCAGCATGTTTACTTTACGGCTCCTG GTCCGCACAAATGGAGTGCTTCTATTTCTTCTCCCAATTGAAAACTCCCACGTGAAGGTGCAGGATGTCTTTATG ACAGACCTTCAGGGCAGGCTCCAACCCTGTCCTGGCTCTGGTCTTTTATCCAAACTCCCATTTGAGCTACGAGTA GTGGATGCGGCGCTTGCCTCTGTGATTGCGACTCTTGAAGCCGAGCATATTCTTATCCGTCGAGAAGCTGAAGAG AGCTTGCAGGATTCAACAAGAGAAGATGTTGTTTACTCTGTTCTGCGCGGGTTGCAGAATCATAAGAAAAGGCTC GTGGCAATTCAGCAGCGCGCCCGCCAGTTCCGCTCCGCGCTACGGGAAATTCTTGAAAATGATGAAGACATGGCG ACCATGTTCTTAACGGATCGGGAGGCAGGTCAACCGCATGAGGTAGATGATCACCAAGAAGTGGAATACCTCCTC GAGGCATATTACAAGAGCACGGACGCTATTGCGGAGTCTGCCAGTGCTTTACTAGGCGATTTGGAGCGCACAACG GAGACCATTCAATCAATCTTGGATGTACGACGAAATCAGATCCTAGTTTTCGAGGCTCAACTGGAGATCTGCATG TTGGGATTTGCCGTGTCAACTTTTGTGGCGGGCCTGTTTGGAATGAACGTGACAAACTTCTTTGAAGACAGTCCT TCGGCATTTGCAATTCTTGTCGGAACGTGTATAATTGGAACGGTCACTATCGCGAAGGTCTGGGGAATCAGCAAA CCCCGGCGAAAGGATCACCCTCTCCTTATACTGAACTGGGCAGGTTATACCGGGCCCACAATTCTTCGGTTCCCG GCGTCACTAGCAAAACCGTTAGACCGGTCGGATATTGCACCAAAGGGCCCCGATTGGGGTCTTCGAACCAGTATC CACGTGGTCGCCGGAATTTCCAATCTTGGCAGAGGCCTCGATCCACAACGGGCTAGGCGGACATTCGCAGGATCG AACAAGGCCGTTGTTCCTGCCATTGTCTTGCCGTTAGCAAACATTATAATGATTGCAAAGCTTCTACTGATATTT GAGATCATGTACGTCACAACGGTAGCAACCACCAAAATTTCTATCCTCCTCATGTACTGTCGCATCTTCCCCACG AGGGAAATCCGCATCGCCTCCTTGGTATTGGGTGGGATGACACTCTCCTGGCTTGTCGCTATTATCCTCGTGAGC GTCTTCCAATGCAATCCGATCCCGCGAGCCTGGGACACGCGCATTCCTGGTAAATGTATCAACCTTAAAGGCATG TTCATCGGGAACGCAGTACCCAACATTCTCACCGACATTCTCATTCTGTCTCTACCGGTCAAGGTGGTGTGGGGA CTGCACGCAAGCCTCACGCATCGACTCGTTGTCTTCACTAGTGCCTATCGCTTCGCTACCATTTTTGGATTCGAC CCGACGGACATTGCCTGGACACTTGGAAGATCCTGCACCTGGTGTGTCGTTGAATCCTCAACGGGTATTATCTCC GCTTGCATGCCGACCCTGCGCCCACTGTTCATGATATTTTCATCCAAGTTCTCCAGCCGGTCTGGGACTAGATCA CGAACTACAGATCTCGACCAATCTAAAGGTTATGAGTTGGATAACTCTGCCCTACGACCGGCGAATGAGCCGCGT AATAAAACCAGAACACAGCTGGAGGTGTCCCATGCCGACGATGGGTCTGAGGATGAGGTGCCATTGAATTCCATC CGAGTTCAGCAGTATATGACATGGCAAGAATCCAGGGGTGACTCTTTTCGAGGATATAAATAA |
| Transcript | >Pro_DTO377G3_2|g8858.t1 ATGAAACAACATAAGATCCAGAACATGGCCGGCTACCGCAAACGGGGAATCATCACGCTCCCCAATAAATCGCAT CATGTCATCCGGGAGCCTGACATGAAAAAAGAAGTCTCCTTCAATCAGGATGTGTTCAACTTGTCTCTTGCTCTG TCGCAAAGCCGCATAAATGATGCGACGGAGTTACGCGGCATGGTCTTGGATGTCGATGGCTCCGTCAAACAATCT GAAATTCGAGGAACTAGAGATGAGATTGCTAAACGGTGGGGATTAGATGGTCGCGATCTACGCAACGTGGATCTT GTCTCGGAAGGAATCCCGCATTTGTTGGTCCGTCCGTCTGTTATCTTCATCAGCATGTTTACTTTACGGCTCCTG GTCCGCACAAATGGAGTGCTTCTATTTCTTCTCCCAATTGAAAACTCCCACGTGAAGGTGCAGGATGTCTTTATG ACAGACCTTCAGGGCAGGCTCCAACCCTGTCCTGGCTCTGGTCTTTTATCCAAACTCCCATTTGAGCTACGAGTA GTGGATGCGGCGCTTGCCTCTGTGATTGCGACTCTTGAAGCCGAGCATATTCTTATCCGTCGAGAAGCTGAAGAG AGCTTGCAGGATTCAACAAGAGAAGATGTTGTTTACTCTGTTCTGCGCGGGTTGCAGAATCATAAGAAAAGGCTC GTGGCAATTCAGCAGCGCGCCCGCCAGTTCCGCTCCGCGCTACGGGAAATTCTTGAAAATGATGAAGACATGGCG ACCATGTTCTTAACGGATCGGGAGGCAGGTCAACCGCATGAGGTAGATGATCACCAAGAAGTGGAATACCTCCTC GAGGCATATTACAAGAGCACGGACGCTATTGCGGAGTCTGCCAGTGCTTTACTAGGCGATTTGGAGCGCACAACG GAGACCATTCAATCAATCTTGGATGTACGACGAAATCAGATCCTAGTTTTCGAGGCTCAACTGGAGATCTGCATG TTGGGATTTGCCGTGTCAACTTTTGTGGCGGGCCTGTTTGGAATGAACGTGACAAACTTCTTTGAAGACAGTCCT TCGGCATTTGCAATTCTTGTCGGAACGTGTATAATTGGAACGGTCACTATCGCGAAGGTCTGGGGAATCAGCAAA CCCCGGCGAAAGGATCACCCTCTCCTTATACTGAACTGGGCAGGTTATACCGGGCCCACAATTCTTCGGTTCCCG GCGTCACTAGCAAAACCGTTAGACCGGTCGGATATTGCACCAAAGGGCCCCGATTGGGGTCTTCGAACCAGTATC CACGTGGTCGCCGGAATTTCCAATCTTGGCAGAGGCCTCGATCCACAACGGGCTAGGCGGACATTCGCAGGATCG AACAAGGCCGTTGTTCCTGCCATTGTCTTGCCGTTAGCAAACATTATAATGATTGCAAAGCTTCTACTGATATTT GAGATCATGTACGTCACAACGGTAGCAACCACCAAAATTTCTATCCTCCTCATGTACTGTCGCATCTTCCCCACG AGGGAAATCCGCATCGCCTCCTTGGTATTGGGTGGGATGACACTCTCCTGGCTTGTCGCTATTATCCTCGTGAGC GTCTTCCAATGCAATCCGATCCCGCGAGCCTGGGACACGCGCATTCCTGGTAAATGTATCAACCTTAAAGGCATG TTCATCGGGAACGCAGTACCCAACATTCTCACCGACATTCTCATTCTGTCTCTACCGGTCAAGGTGGTGTGGGGA CTGCACGCAAGCCTCACGCATCGACTCGTTGTCTTCACTAGTGCCTATCGCTTCGCTACCATTTTTGGATTCGAC CCGACGGACATTGCCTGGACACTTGGAAGATCCTGCACCTGGTGTGTCGTTGAATCCTCAACGGGTATTATCTCC GCTTGCATGCCGACCCTGCGCCCACTGTTCATGATATTTTCATCCAAGTTCTCCAGCCGGTCTGGGACTAGATCA CGAACTACAGATCTCGACCAATCTAAAGGTTATGAGTTGGATAACTCTGCCCTACGACCGGCGAATGAGCCGCGT AATAAAACCAGAACACAGCTGGAGGTGTCCCATGCCGACGATGGGTCTGAGGATGAGGTGCCATTGAATTCCATC CGAGTTCAGCAGTATATGACATGGCAAGAATCCAGGGGTGACTCTTTTCGAGGATATAAATAA |
| Gene | >Pro_DTO377G3_2|g8858.t1 ATGAAACAACATAAGATCCAGAACATGGCCGGCTACCGCAAACGGGGAATCATCACGCTCCCCAATAAATCGCAT CATGTCATCCGGGAGCCTGACATGAAAAAAGAAGTCTCCTTCAATCAGGATGTGTTCAACTTGTCTCTTGCTCTG TCGCAAAGCCGCATAAATGATGCGACGGAGTTACGCGGCATGGTCTTGGATGTCGATGGCTCCGTCAAACAATCT GAAATTCGAGGAACTAGAGATGAGATTGCTAAACGGTGGGGATTAGATGGTCGCGATCTACGCAACGTGGATCTT GTCTCGGAAGGAATCCCGCATTTGTTGGTCCGTCCGTCTGTTATCTTCATCAGCATGTTTACTTTACGGCTCCTG GTCCGCACAAATGGAGTGCTTCTATTTCTTCTCCCAATTGAAAACTCCCACGTGAAGGTGCAGGATGTCTTTATG ACAGACCTTCAGGGCAGGCTCCAACCCTGTCCTGGCTCTGGTCTTTTATCCAAACTCCCATTTGAGCTACGAGTA GTGGATGCGGCGCTTGCCTCTGTGATTGCGACTCTTGAAGCCGAGCATATTCTTATCCGTCGAGAAGCTGAAGAG AGCTTGCAGGATTCAACAAGAGAAGATGTTGTTTACTCTGTTCTGCGCGGGTTGCAGAATCATAAGAAAAGGCTC GTGGCAATTCAGCAGCGCGCCCGCCAGTTCCGCTCCGCGCTACGGGAAATTCTTGAAAATGATGAAGACATGGCG ACCATGTTCTTAACGGATCGGGAGGCAGGTCAACCGCATGAGGTAGATGATCACCAAGAAGTGGAATACCTCCTC GAGGCATATTACAAGAGCACGGACGCTATTGCGGAGTCTGCCAGTGCTTTACTAGGCGATTTGGAGCGCACAACG GAGACCATTCAATCAATCTTGGATGTACGACGAAATCAGATCCTAGTTTTCGAGGCTCAACTGGAGATCTGCATG TTGGGATTTGCCGTGTCAACTTTTGTGGCGGGCCTGTTTGGAATGAACGTGACAAACTTCTTTGAAGACAGTCCT TCGGCATTTGCAATTCTTGTCGGAACGTGTATAATTGGAACGGTCACTATCGCGAAGTATGGGCTATGGAAACTC AATAAATTCCGGACATTGCGTTTTTAGAGCGAGCTTGCATATTCATCATTGGAAAAATCAAATGAAGTCTTTTTC TGTAGGCGAGGATGCACGGGGATTTAAATTGGCAGTGCCATTTCTTGTATGAAGTAGAAATATAAAAACGAGAGA TGCGACTTGACCTAATCATGATAGGTTGACGGACTACAAAAGCAGCAGGGAAGTTATATATATCAAGTCGTGTGC TTGCAAGTTAGAGGTGAACCCTTTTACCAGATGAGTAGAGGCATATATATATCTATAGAGCAAAGCGGGTAATAA ATTAAAGATTCACAACATTTGATCTTCAAGAACCGAAAACACTCCAAATCGACTCTCACTGACACTCAGAGCATA CGGCTCCGCGGGATTGAACTTCAACTATTACCATTACTCCCACCAGTAAGTGATACCTCATATCTCTATTTAGTG GTTACCCCGTCTGGTGTCTGCATTTGACTGACAAGTATTTTTACAAATTAGTGATGATTCCTACGACTACTCAAC CTCCATGGCAGCACGCACTACAACGGCAGCAAGGGCGATGCTGTGTACACCCCTCCCCCTGCGCCTGGATGACCA TCCAGGAAAGGAGGCTTCCGCCCAGCATGTCCTTTACCGTTTTCCCCTGGGACGTCACAAATGCAGCCATGATTA CGCCGGGAAGACCGGCTTTGCACCGCTGCGTGTACCCAGGCCCCCAACAACCCCGGCGCCGACGATTTCGCCACA GGAGTCGTTTACCACCAAAATCTAGCAGCCAGCTTCTACCATTTCTTTGAGAGACGTTAATTGTGATGCGCCCAC AGACGGGCCGAAATAAGTCCGCGCTTGTGCGTTTAGATCTAGAAGGACGTCGACTGTGTCAGCGGCCTGTCATGC GCCTAGTGCGAAGACGAAAACGGGTTCTCAAACATGGCCATCGTGTAATTGGGGTGGGAAAACACTCCGTACATC TACGCCCAACCAGGGTCTGGGGAATCAGCAAACCCCGGCGAAAGGATCACCCTCTCCTTATACTGAACTGGGCAG GTTATACCGGGCCCACAATTCTTCGGTACGTGGAACGATTGGCTCTTTGGATCTATTGTTATAATCAATTTCCTT GAAGTATTCCGACTGCTTGGGCCAACGATGGAGCCCGACTGAGATTCACCTTGTTATAGGTTCCCGGCGTCACTA GCAAAACCGTTAGACCGGTCGGATATTGCACCAAAGGGCCCCGATTGGGGTCTTCGAACCAGTATCCACGTGGTC GCCGGAATTTCCAATCTTGGCAGAGGCCTCGATCCACAACGGGCTAGGCGGACATTCGCAGGATCGAACAAGGCC GTTGTTCCTGCCATTGTTCTTATTTACGGAGCATACCCTTTTCTGTTCGTTGTTCTCGTGCTTCTGATTTGCTGT GGGATATTGACATGCAGATCATCAGGGATATGCAGAATACCCGGAGTTCCCAGCGGATATCTTTTCCTGTGCTAC TCCGTACAACATTGTAAAACAGTATTCTCTCCTATCAACTTGTATTTTATTCAGCAACAGCGCAAAGTCGAAAGG AACTGGTGTCCAAGTGTTACATATGATAACAAGTACCAGCAGACCCAAAGCCTAATGTACTAAACCCTGTATCTA GTCAGGGCCGACTGAACCTTAAACCTATACGAAGGAAATAATGAAAATCATACGACTGGAGGAATAACATGATCC CCTCGTCTCAAAATGTTACGCACCAAAGCACATCGAATTTTGTTGCGGTGGCATTCCGTAGTATTCCGCAGTCCT CTTACTAGTTGCAACACAGAGAGTATTAAAATACGGATTGATCCTCGCAATATTAATCGTGCACACATTAGGCAT ACCGTTTGTCGCTCAATAGTGGATAACCATGAATCCTGACACTTGAAGTGGATCATCTCTGACAAGTCTCTTTTG CCGCTTCGGGGGCTGCATGAGAGGAATCAATTCTCTTTAAAGTAAGCATTGCCGCACCTTGATCTTGGCCTGTTT CGAACGTCCCAACACGATGGCTGCATACAATGCCCAGGATAGCTACCAAGGGTCCTATCGGGCCGGGACGATCAC GATGACTGTCCTGGGCGTCTTGTTTGTGATTTTACGGTTTCTCGCACGGTGGAAGAAATCACTAAAGCCAGGCCT GGACGACTTTTTTATCGTGCTCGCTCTCTTTCCTTTGTTAGCACTCGTTGGATTGATGCTATCTTGTACGACACA TTTCCCCTAAAGGTTGTTGATTCTCATGCTAATTGTTGATAGTAACTAATTATGGCATGGGTTTACATTCTCAGG TCTTGCCGTTAGCAAACATTATAATGATTGCAAAGGTCCGATTCAAATTACAGAGGATACAGTTGATACCTCCGC TAACATCCAAGTAGCTTCTACTGATATTTGAGATCATGTACGTCACAACGGTAGCAACCACCAAAATTTCTATCC TCCTCATGTACTGTCGCATCTTCCCCACGAGGGAAATCCGCATCGCCTCCTTGGTATTGGGTGGGATGACACTCT CCTGGCTTGTCGCTATTATCCTCGTGAGCGTCTTCCAATGCAATCCGATCCCGCGAGCCTGGGACACGCGCATTC CTGGTAAATGTATCAACCTTAAAGGCATGTTCATCGGGAACGCAGTACCCAACATTCTCACCGACATTCTCATTC TGTCTCTACCGGTCAAGGTGGTGTGGGGACTGCACGCAAGCCTCACGCATCGACTGTCCGTGGTTGGAATATTTC TCTTGGGTAGTTTGTCCGTATATCCATTTCCTACATATTACTACTTTGTGACGATAGACTAACCGGGCTGCTCTC CCTTAGCGTTGTCTTCACTAGTGCCTATCGCTTCGCTACCATTTTTGGATTCGACCCGACGGACATTGCCTGGAC ACTTGGAAGATCCTGCACCTGGTGTGTCGTTGAATCCTCAACGGGTATTATCTCCGCTTGCATGCCGACCCTGCG CCCACTGTTCATGATATTTTCATCCAAGTTCTCCAGCCGGTCTGGGACTAGATCACGAACTACAGATCTCGACCA ATCTAAAGGTTATGAGTTGGATAACTCTGCCCTACGACCGGCGAATGAGCCGCGTAATAAAACCAGAACACAGCT GGAGGTGTCCCATGCCGACGATGGGTCTGAGGATGAGGTGCCATTGAATTCCATCCGAGTTCAGCAGTATATGAC ATGGCAAGAATCCAGGGGTGACTCTTTTCGAGGATATAAATAA |