Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g8854.t1
Gene name
Locationscaffold_38:21081..21501
Strand+
Gene length (bp)420
Transcript length (bp)342
Coding sequence length (bp)342
Protein length (aa) 114

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF15474 MU117 Meiotically up-regulated gene family 5.0E-08 23 111

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 1.25 0.0 3.46
5d_25C Five days - 25 degrees Celsius 0.64 0.0 1.60
7d_25C Seven days - 25 degrees Celsius 0.98 0.0 2.95
10d_25C Ten days - 25 degrees Celsius 0.61 0.0 1.56
7d_15C Seven days - 15 degrees Celsius 0.83 0.0 2.00
7d_30C Seven days - 30 degrees Celsius 1.03 0.0 2.38

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.689769 no
3d_25C 7d_25C 0.881757 no
3d_25C 7d_15C 0.772564 no
3d_25C 7d_30C 0.903738 no
3d_25C 10d_25C 0.595279 no
5d_25C 7d_25C 0.803801 no
5d_25C 7d_15C 1.000000 no
5d_25C 7d_30C 1.000000 no
5d_25C 10d_25C 1.000000 no
7d_25C 7d_15C 0.935894 no
7d_25C 7d_30C 0.961499 no
7d_25C 10d_25C 0.800692 no
7d_15C 7d_30C 1.000000 no
7d_15C 10d_25C 1.000000 no
7d_30C 10d_25C 1.000000 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g8854.t1
MQLIAYLIGAVAPAMLAMAYNDNCDGSLIPANKDDCLKAISNVDTSATYNDGSQFSEGECYLVYATNGSGDQPVS
GQKIHDVAQAIVDNCDMQHGSFGTENCNSCHVTVNYRS*
Coding >Pro_DTO377G3_2|g8854.t1
ATGCAACTTATTGCCTACCTGATCGGAGCCGTGGCTCCTGCAATGTTGGCTATGGCTTACAATGATAATTGCGAC
GGATCTTTGATTCCAGCGAACAAAGACGATTGTCTCAAGGCCATTTCAAATGTTGACACGTCGGCAACATACAAC
GACGGTAGTCAATTTAGCGAAGGCGAATGCTACCTGGTCTACGCTACAAACGGTAGTGGTGATCAACCCGTCAGC
GGACAGAAGATCCATGATGTTGCTCAGGCCATTGTCGACAATTGTGACATGCAACATGGAAGCTTTGGAACCGAA
AACTGCAATTCGTGCCACGTGACTGTGAATTACCGCTCTTGA
Transcript >Pro_DTO377G3_2|g8854.t1
ATGCAACTTATTGCCTACCTGATCGGAGCCGTGGCTCCTGCAATGTTGGCTATGGCTTACAATGATAATTGCGAC
GGATCTTTGATTCCAGCGAACAAAGACGATTGTCTCAAGGCCATTTCAAATGTTGACACGTCGGCAACATACAAC
GACGGTAGTCAATTTAGCGAAGGCGAATGCTACCTGGTCTACGCTACAAACGGTAGTGGTGATCAACCCGTCAGC
GGACAGAAGATCCATGATGTTGCTCAGGCCATTGTCGACAATTGTGACATGCAACATGGAAGCTTTGGAACCGAA
AACTGCAATTCGTGCCACGTGACTGTGAATTACCGCTCTTGA
Gene >Pro_DTO377G3_2|g8854.t1
ATGCAACTTATTGCCTACCTGATCGGAGCCGTGGCTCCTGCAATGTTGGCTATGGCTTACAATGATAAGTAAGTT
TACGTCCTCTTGTCCCTATTATTTCTCTAGCAGACTTGGCTCTTTCGTTCGGAATGTTAATGAGTCTTTAGTTGC
GACGGATCTTTGATTCCAGCGAACAAAGACGATTGTCTCAAGGCCATTTCAAATGTTGACACGTCGGCAACATAC
AACGACGGTAGTCAATTTAGCGAAGGCGAATGCTACCTGGTCTACGCTACAAACGGTAGTGGTGATCAACCCGTC
AGCGGACAGAAGATCCATGATGTTGCTCAGGCCATTGTCGACAATTGTGACATGCAACATGGAAGCTTTGGAACC
GAAAACTGCAATTCGTGCCACGTGACTGTGAATTACCGCTCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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