Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g8853.t1
Gene name
Locationscaffold_38:19243..19656
Strand+
Gene length (bp)413
Transcript length (bp)357
Coding sequence length (bp)357
Protein length (aa) 119

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF15474 MU117 Meiotically up-regulated gene family 1.1E-08 23 116

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 0.54 0.0 1.43
5d_25C Five days - 25 degrees Celsius 0.14 0.0 0.63
7d_25C Seven days - 25 degrees Celsius 0.00 0.0 0.00
10d_25C Ten days - 25 degrees Celsius 1.07 0.0 2.47
7d_15C Seven days - 15 degrees Celsius 0.13 0.0 0.61
7d_30C Seven days - 30 degrees Celsius 0.00 0.0 0.00

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 1.000000 no
3d_25C 7d_25C 1.000000 no
3d_25C 7d_15C 1.000000 no
3d_25C 7d_30C 1.000000 no
3d_25C 10d_25C 0.709915 no
5d_25C 7d_25C 1.000000 no
5d_25C 7d_15C 1.000000 no
5d_25C 7d_30C 1.000000 no
5d_25C 10d_25C 0.363158 no
7d_25C 7d_15C 1.000000 no
7d_25C 7d_30C 1.000000 no
7d_25C 10d_25C 0.022940 yes
7d_15C 7d_30C 1.000000 no
7d_15C 10d_25C 0.338052 no
7d_30C 10d_25C 0.022940 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g8853.t1
MQLWAYLLPVATIGQVAMAYSSNCEGSFVLDTDLVSIDKDCAKAISNIDTSATYNDGSQFSEGHCYLVYATNGSG
DQPVSGQTIHDVAQSILDGCAKKHGSYGTGNCDACHVTVNYRS*
Coding >Pro_DTO377G3_2|g8853.t1
ATGCAGCTCTGGGCTTATCTCCTTCCTGTGGCCACCATTGGTCAAGTAGCCATGGCCTACAGCAGCAACTGTGAG
GGGTCTTTCGTCCTTGACACGGACCTGGTTTCCATTGACAAGGACTGCGCAAAAGCCATCTCCAATATCGACACA
TCGGCAACATACAACGATGGCAGTCAGTTCAGTGAGGGCCACTGTTATCTGGTCTATGCTACAAATGGCAGTGGT
GATCAGCCTGTTAGCGGACAGACGATTCATGACGTTGCCCAGAGCATTCTTGATGGCTGTGCAAAGAAGCACGGG
AGCTATGGAACTGGAAACTGCGATGCCTGTCATGTCACTGTCAATTACCGATCCTGA
Transcript >Pro_DTO377G3_2|g8853.t1
ATGCAGCTCTGGGCTTATCTCCTTCCTGTGGCCACCATTGGTCAAGTAGCCATGGCCTACAGCAGCAACTGTGAG
GGGTCTTTCGTCCTTGACACGGACCTGGTTTCCATTGACAAGGACTGCGCAAAAGCCATCTCCAATATCGACACA
TCGGCAACATACAACGATGGCAGTCAGTTCAGTGAGGGCCACTGTTATCTGGTCTATGCTACAAATGGCAGTGGT
GATCAGCCTGTTAGCGGACAGACGATTCATGACGTTGCCCAGAGCATTCTTGATGGCTGTGCAAAGAAGCACGGG
AGCTATGGAACTGGAAACTGCGATGCCTGTCATGTCACTGTCAATTACCGATCCTGA
Gene >Pro_DTO377G3_2|g8853.t1
ATGCAGCTCTGGGCTTATCTCCTTCCTGTGGCCACCATTGGTCAAGTAGCCATGGCCTACAGCAGCAAGTAAGTA
TTACGTCTACGGCACCTATCTGAGACTGCTGGTTTCTAACAATCTTCAGCTGTGAGGGGTCTTTCGTCCTTGACA
CGGACCTGGTTTCCATTGACAAGGACTGCGCAAAAGCCATCTCCAATATCGACACATCGGCAACATACAACGATG
GCAGTCAGTTCAGTGAGGGCCACTGTTATCTGGTCTATGCTACAAATGGCAGTGGTGATCAGCCTGTTAGCGGAC
AGACGATTCATGACGTTGCCCAGAGCATTCTTGATGGCTGTGCAAAGAAGCACGGGAGCTATGGAACTGGAAACT
GCGATGCCTGTCATGTCACTGTCAATTACCGATCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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