© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8831.t1 |
| Gene name | |
| Location | scaffold_37:179989..181305 |
| Strand | - |
| Gene length (bp) | 1316 |
| Transcript length (bp) | 1098 |
| Coding sequence length (bp) | 1098 |
| Protein length (aa) | 366 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00704 | Glyco_hydro_18 | Glycosyl hydrolases family 18 | 4.5E-76 | 33 | 347 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 18.50 | 8.50 | 28.51 |
| 5d_25C | Five days - 25 degrees Celsius | 16.36 | 7.25 | 25.47 |
| 7d_25C | Seven days - 25 degrees Celsius | 16.65 | 7.39 | 25.92 |
| 10d_25C | Ten days - 25 degrees Celsius | 15.36 | 6.69 | 24.03 |
| 7d_15C | Seven days - 15 degrees Celsius | 15.85 | 6.94 | 24.76 |
| 7d_30C | Seven days - 30 degrees Celsius | 27.80 | 14.10 | 41.49 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.770142 | no |
| 3d_25C | 7d_25C | 0.807634 | no |
| 3d_25C | 7d_15C | 0.695298 | no |
| 3d_25C | 7d_30C | 0.172670 | no |
| 3d_25C | 10d_25C | 0.623308 | no |
| 5d_25C | 7d_25C | 0.971605 | no |
| 5d_25C | 7d_15C | 0.950886 | no |
| 5d_25C | 7d_30C | 0.065810 | no |
| 5d_25C | 10d_25C | 0.894212 | no |
| 7d_25C | 7d_15C | 0.919664 | no |
| 7d_25C | 7d_30C | 0.079412 | no |
| 7d_25C | 10d_25C | 0.861749 | no |
| 7d_15C | 7d_30C | 0.047513 | yes |
| 7d_15C | 10d_25C | 0.950584 | no |
| 7d_30C | 10d_25C | 0.037779 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8831.t1 MFSASRLFRRRGADRDPAAESHVSYEVPLYTNAAYYPNWRIYRKEPPSSLRLGFISHVFYAFAWVKDDGTVYLSD EWADTQMPVDGAEGCLRAFVQLKQQYSKMRVILSVGGGGKGSENFAAVASSHSRVDTFVRTARELVDQFGIDGID IDWEHPSDSKQGKDYVRLLARLREVLPAPRYVLTTALPAGQWALRNIDLAAAQKHLDMINLMTYDFAGPWESETG HQAQLYGSGISGDSAVSYVIGQGVPPRKIILGVPVYGRSFLGSNGPGQRYTGHGGEDGVFDYRDLPRPGTQEYYD RNIGASFCVGADGGFVTYDTPETVKQKAEFVTSSKLGGLFYWHVCSDARGPRSLVETGYNTMHEM* |
| Coding | >Pro_DTO377G3_2|g8831.t1 ATGTTCTCAGCTTCCAGGCTCTTCCGCCGACGGGGCGCGGATCGTGACCCCGCTGCCGAGTCCCACGTCTCATAC GAAGTGCCACTGTACACAAATGCAGCCTACTATCCGAATTGGAGAATCTATCGAAAGGAACCTCCTTCATCTTTG CGCTTGGGATTTATCTCACATGTGTTCTACGCATTTGCCTGGGTGAAAGATGACGGAACTGTCTATCTGAGCGAT GAGTGGGCTGATACCCAGATGCCCGTTGACGGCGCAGAAGGTTGCCTTAGAGCTTTCGTCCAATTGAAGCAACAG TACTCTAAGATGAGGGTCATCCTCTCTGTTGGTGGTGGCGGAAAAGGCAGTGAGAACTTCGCCGCTGTAGCCAGC AGCCATTCTCGGGTGGACACTTTCGTTCGCACCGCGCGGGAACTGGTGGATCAATTTGGAATTGATGGAATTGAC ATCGACTGGGAGCACCCCTCTGATTCCAAGCAAGGAAAGGATTATGTTCGTCTCCTCGCACGTCTGCGGGAAGTG CTACCCGCTCCGCGTTACGTCCTTACCACCGCCCTCCCTGCCGGCCAGTGGGCATTGCGGAACATTGACCTTGCT GCCGCACAAAAACATCTTGACATGATCAACCTCATGACGTACGATTTCGCGGGACCATGGGAATCCGAGACGGGC CATCAGGCGCAGCTTTATGGCTCAGGCATATCTGGTGATTCGGCGGTTTCTTATGTTATAGGGCAAGGAGTGCCC CCTAGAAAGATCATTTTGGGTGTCCCAGTTTATGGACGATCCTTCCTGGGCAGCAACGGTCCTGGTCAGCGGTAT ACTGGACACGGTGGCGAAGATGGTGTTTTTGACTATCGCGACCTACCCCGACCGGGGACACAGGAGTATTATGAT AGGAACATCGGTGCGTCATTCTGTGTTGGAGCTGATGGCGGTTTCGTCACATACGATACCCCAGAAACAGTAAAA CAGAAGGCGGAATTTGTGACCTCGTCGAAACTGGGTGGCCTGTTTTACTGGCATGTCTGCTCCGATGCCCGAGGA CCGCGTAGCTTGGTTGAGACGGGATACAACACGATGCACGAGATGTGA |
| Transcript | >Pro_DTO377G3_2|g8831.t1 ATGTTCTCAGCTTCCAGGCTCTTCCGCCGACGGGGCGCGGATCGTGACCCCGCTGCCGAGTCCCACGTCTCATAC GAAGTGCCACTGTACACAAATGCAGCCTACTATCCGAATTGGAGAATCTATCGAAAGGAACCTCCTTCATCTTTG CGCTTGGGATTTATCTCACATGTGTTCTACGCATTTGCCTGGGTGAAAGATGACGGAACTGTCTATCTGAGCGAT GAGTGGGCTGATACCCAGATGCCCGTTGACGGCGCAGAAGGTTGCCTTAGAGCTTTCGTCCAATTGAAGCAACAG TACTCTAAGATGAGGGTCATCCTCTCTGTTGGTGGTGGCGGAAAAGGCAGTGAGAACTTCGCCGCTGTAGCCAGC AGCCATTCTCGGGTGGACACTTTCGTTCGCACCGCGCGGGAACTGGTGGATCAATTTGGAATTGATGGAATTGAC ATCGACTGGGAGCACCCCTCTGATTCCAAGCAAGGAAAGGATTATGTTCGTCTCCTCGCACGTCTGCGGGAAGTG CTACCCGCTCCGCGTTACGTCCTTACCACCGCCCTCCCTGCCGGCCAGTGGGCATTGCGGAACATTGACCTTGCT GCCGCACAAAAACATCTTGACATGATCAACCTCATGACGTACGATTTCGCGGGACCATGGGAATCCGAGACGGGC CATCAGGCGCAGCTTTATGGCTCAGGCATATCTGGTGATTCGGCGGTTTCTTATGTTATAGGGCAAGGAGTGCCC CCTAGAAAGATCATTTTGGGTGTCCCAGTTTATGGACGATCCTTCCTGGGCAGCAACGGTCCTGGTCAGCGGTAT ACTGGACACGGTGGCGAAGATGGTGTTTTTGACTATCGCGACCTACCCCGACCGGGGACACAGGAGTATTATGAT AGGAACATCGGTGCGTCATTCTGTGTTGGAGCTGATGGCGGTTTCGTCACATACGATACCCCAGAAACAGTAAAA CAGAAGGCGGAATTTGTGACCTCGTCGAAACTGGGTGGCCTGTTTTACTGGCATGTCTGCTCCGATGCCCGAGGA CCGCGTAGCTTGGTTGAGACGGGATACAACACGATGCACGAGATGTGA |
| Gene | >Pro_DTO377G3_2|g8831.t1 ATGTTCTCAGCTTCCAGGCTCTTCCGCCGACGGGGCGCGGATCGTGACCCCGCTGCCGAGTCCCACGTCTCATAC GAAGTGCCACTGTACACAAATGCAGCCTACTATCCGAATTGGAGAATCTATCGAAAGGAACCTCCTTCATCTTTG CGCTTGGGATTTATCTCACATGTGTTCTACGCATTTGCCTGGTAAACACAGCCAATCACCGCCATTCAAGAGTCC GGGTTCGAGCAGATGGCTGACGCGCTAATCTCAAATTGGTTTCTTGCAGGGTGAAAGATGACGGAACTGTCTATG TAAGTTTTAAGTTTTAATCACGCACCTCCTCTAATGTGGGAATATTTACTGACGCTGCGTCATAGCTGAGCGATG AGTGGGCTGATACCCAGATGCCCGTTGACGGCGCAGAAGGTTGCCTTAGAGCTTTCGTCCAATTGAAGCAACAGT ACTCTAAGATGAGGGTCATCCTCTCTGTTGGTGGTGGCGGAAAAGGCAGTGAGAACTTCGCCGCTGTAGCCAGCA GCCATTCTCGGGTGGACACTTTCGTTCGCACCGCGCGGGAACTGGTGGATCAATTTGGAATTGATGGAATTGACA GTAAGGCCGCGTATCTTTTTGATGCTGAGACAAGTCGGATGTACATGACTAACTCCATCTGCTATGCAGTCGACT GGGAGCACCCCTCTGATTCCAAGCAAGGAAAGGATTATGTTCGTCTCCTCGCACGTCTGCGGGAAGTGCTACCCG CTCCGCGTTACGTCCTTACCACCGCCCTCCCTGCCGGCCAGTGGGCATTGCGGAACATTGACCTTGCTGCCGCAC AAAAACATCTTGACATGATCAACCTCATGACGTACGATTTCGCGGGACCATGGGAATCCGAGACGGGCCATCAGG CGCAGCTTTATGGCTCAGGCATATCTGGTGATTCGGCGGTTTCTTATGTTATAGGGCAAGGAGTGCCCCCTAGAA AGATCATTTTGGGTGTCCCAGTTTATGGACGATCCTTCCTGGGCAGCAACGGTCCTGGTCAGCGGTATACTGGAC ACGGTGGCGAAGATGGTGTTTTTGACTATCGCGACCTACCCCGACCGGGGACACAGGAGTATTATGATAGGAACA TCGGTGCGTCATTCTGTGTTGGAGCTGATGGCGGTTTCGTCACATACGATACCCCAGAAACAGTAAAACAGAAGG CGGAATTTGTGACCTCGTCGAAACTGGGTGGCCTGTTTTACTGGCATGTCTGCTCCGATGCCCGAGGACCGCGTA GCTTGGTTGAGACGGGATACAACACGATGCACGAGATGTGA |