© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g8797.t1 |
| Gene name | |
| Location | scaffold_37:103567..105682 |
| Strand | + |
| Gene length (bp) | 2115 |
| Transcript length (bp) | 2115 |
| Coding sequence length (bp) | 2115 |
| Protein length (aa) | 705 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00728 | Glyco_hydro_20 | Glycosyl hydrolase family 20, catalytic domain | 6.8E-24 | 170 | 475 |
| PF02838 | Glyco_hydro_20b | Glycosyl hydrolase family 20, domain 2 | 7.2E-09 | 62 | 167 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 24 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 13.05 | 6.65 | 19.45 |
| 5d_25C | Five days - 25 degrees Celsius | 13.53 | 6.95 | 20.11 |
| 7d_25C | Seven days - 25 degrees Celsius | 14.30 | 7.33 | 21.27 |
| 10d_25C | Ten days - 25 degrees Celsius | 11.04 | 5.36 | 16.72 |
| 7d_15C | Seven days - 15 degrees Celsius | 25.11 | 13.21 | 37.01 |
| 7d_30C | Seven days - 30 degrees Celsius | 19.14 | 10.46 | 27.83 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.931924 | no |
| 3d_25C | 7d_25C | 0.805926 | no |
| 3d_25C | 7d_15C | 0.011388 | yes |
| 3d_25C | 7d_30C | 0.148408 | no |
| 3d_25C | 10d_25C | 0.628385 | no |
| 5d_25C | 7d_25C | 0.889165 | no |
| 5d_25C | 7d_15C | 0.015268 | yes |
| 5d_25C | 7d_30C | 0.201950 | no |
| 5d_25C | 10d_25C | 0.540051 | no |
| 7d_25C | 7d_15C | 0.029318 | yes |
| 7d_25C | 7d_30C | 0.305203 | no |
| 7d_25C | 10d_25C | 0.410920 | no |
| 7d_15C | 7d_30C | 0.345179 | no |
| 7d_15C | 10d_25C | 0.002761 | yes |
| 7d_30C | 10d_25C | 0.038184 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8797.t1 MKWIVLSLAAVASALQILPPVHFDNTGSGHNKGFSLATTDRTIYLSADFASWKDQNGLTLLPPSASDFANTFRDD LQELTNSSWELRTVKQFPKHASGIFLGRTDHPDRFTYESGRQTEEGYELEIQDGSVVIRGSGARGMWWGTRTLLQ QLVLTRSSLQPGRVEDAPAYATRGFLLDAGRKWYSLEFLKDLCTYASFFKLSEFHYHATDNYPLSRGRNVTWNEI YSQFSLHPESEALRPLVQRANETLSRAEFDDFQHHCAQRGVTVIPEIESPGHCLTVTKWRPELALESRDLLNLSH PDTVPLMKSIWTEFLPWFHTKEVHIGADEYDSEFADDYVEFVNEMSRFVQAASGKSVRIWGTYEPSNIPIDKNVT IQHWQYGQSDPVDLAQNGYQIINSEDWWAYMSLKSNHVPITPAPYPQFFNNARVLNFADQHGWQWTPGLFNPVNK TEQPDTEAVLGALLAAWNDSGPDATTQLEAYYAIRDGIPVVASRVWCGARGPPLHEPTLAKSIAQLSSQAVGQNL DRRVPGERAHGSGTLLSWTRPTTSQDKHNLGYGSKGMDYTLQLNVTGPFSLQSSDATLTLSSDGELAFVSDGWPY PLRSVAEADAFDEDQPGRIWVNKTTSTHKAVIIPRKSQVTISTNEIYGSRVWVDGDFVGRFEVFIYGGKNKNFSW SQMAFVAPLDILEGPGLQHLAVFQGSREG* |
| Coding | >Pro_DTO377G3_2|g8797.t1 ATGAAGTGGATTGTCCTCTCACTTGCCGCAGTCGCGTCTGCGCTGCAGATCCTACCCCCGGTGCACTTTGACAAC ACTGGCTCTGGTCATAACAAAGGCTTTTCGTTAGCAACCACCGACCGAACAATCTACCTAAGTGCCGATTTCGCT AGCTGGAAGGATCAGAATGGACTAACGCTGCTTCCACCATCGGCATCCGACTTTGCCAACACGTTTCGCGATGAT TTACAGGAGCTAACGAACAGTTCCTGGGAGCTTCGTACGGTCAAGCAATTCCCCAAACATGCGTCGGGAATATTT CTCGGGCGCACAGACCATCCCGACCGGTTTACGTACGAAAGTGGACGCCAGACCGAGGAGGGATATGAGCTGGAA ATACAAGATGGCAGTGTAGTTATTCGAGGCTCCGGGGCGCGAGGTATGTGGTGGGGAACGCGAACGCTCCTCCAG CAACTCGTTTTGACACGCTCATCCCTACAACCTGGTCGCGTGGAAGATGCACCCGCCTATGCGACTCGTGGATTT TTGCTAGATGCTGGTCGCAAATGGTATTCACTCGAGTTTTTGAAAGATTTATGCACCTACGCCTCGTTCTTCAAA TTATCCGAGTTTCACTACCATGCGACCGACAACTATCCGCTGAGCCGCGGTCGAAACGTGACCTGGAACGAGATC TACTCGCAGTTTTCCTTGCACCCCGAAAGTGAGGCCCTCCGCCCTCTTGTCCAGCGTGCCAACGAAACGCTATCC CGGGCTGAGTTTGATGATTTCCAGCACCATTGTGCTCAGCGAGGTGTTACAGTGATACCGGAGATCGAAAGCCCC GGGCACTGTCTCACAGTTACGAAATGGAGACCTGAGCTCGCGTTAGAGTCGAGGGACCTGCTCAATCTCTCGCAT CCGGACACTGTTCCTTTGATGAAGTCCATCTGGACCGAATTTCTTCCTTGGTTCCACACAAAGGAGGTGCATATC GGTGCCGATGAGTACGACTCTGAATTTGCGGATGACTATGTTGAGTTCGTGAACGAGATGTCTCGCTTTGTACAA GCAGCTTCTGGCAAAAGTGTTCGTATTTGGGGGACATATGAGCCATCAAACATTCCCATTGACAAGAATGTGACA ATTCAACACTGGCAGTATGGACAATCAGATCCAGTTGACCTAGCCCAAAACGGCTACCAGATCATCAACTCCGAG GATTGGTGGGCATATATGTCGCTGAAAAGCAACCATGTGCCTATCACCCCAGCCCCTTATCCTCAGTTTTTCAAC AACGCCCGTGTTCTGAACTTCGCCGACCAGCACGGATGGCAGTGGACCCCTGGGCTCTTCAATCCGGTGAACAAA ACTGAACAACCCGATACCGAAGCTGTACTAGGTGCTCTCTTGGCTGCCTGGAATGACAGTGGCCCGGATGCCACT ACTCAGCTTGAGGCCTACTATGCCATTCGTGATGGCATCCCAGTCGTGGCTTCGCGAGTGTGGTGTGGTGCGCGT GGGCCTCCCTTGCATGAACCAACCTTGGCCAAATCCATCGCACAATTGTCCTCTCAAGCTGTGGGGCAAAATCTC GACCGCCGCGTTCCGGGAGAAAGGGCCCACGGATCAGGAACTTTGCTTTCATGGACAAGGCCAACTACCAGCCAG GATAAGCATAACCTCGGCTATGGAAGTAAGGGCATGGATTATACCCTTCAACTAAACGTCACGGGTCCTTTTTCT TTGCAGTCCTCCGATGCGACACTTACATTATCATCGGACGGTGAATTGGCTTTTGTTTCTGATGGATGGCCATAC CCACTTCGCTCTGTTGCTGAGGCTGACGCTTTTGACGAAGACCAGCCTGGAAGAATTTGGGTTAATAAGACCACG TCAACCCACAAGGCTGTCATAATCCCTCGCAAATCACAAGTCACTATCTCTACAAATGAGATATATGGAAGTCGC GTGTGGGTGGATGGTGACTTTGTCGGCCGCTTTGAAGTGTTTATCTATGGCGGAAAGAATAAAAATTTCTCATGG AGTCAGATGGCTTTTGTGGCCCCCTTGGATATTTTGGAAGGCCCGGGCTTGCAACACTTGGCTGTTTTTCAGGGT AGCAGGGAAGGTTGA |
| Transcript | >Pro_DTO377G3_2|g8797.t1 ATGAAGTGGATTGTCCTCTCACTTGCCGCAGTCGCGTCTGCGCTGCAGATCCTACCCCCGGTGCACTTTGACAAC ACTGGCTCTGGTCATAACAAAGGCTTTTCGTTAGCAACCACCGACCGAACAATCTACCTAAGTGCCGATTTCGCT AGCTGGAAGGATCAGAATGGACTAACGCTGCTTCCACCATCGGCATCCGACTTTGCCAACACGTTTCGCGATGAT TTACAGGAGCTAACGAACAGTTCCTGGGAGCTTCGTACGGTCAAGCAATTCCCCAAACATGCGTCGGGAATATTT CTCGGGCGCACAGACCATCCCGACCGGTTTACGTACGAAAGTGGACGCCAGACCGAGGAGGGATATGAGCTGGAA ATACAAGATGGCAGTGTAGTTATTCGAGGCTCCGGGGCGCGAGGTATGTGGTGGGGAACGCGAACGCTCCTCCAG CAACTCGTTTTGACACGCTCATCCCTACAACCTGGTCGCGTGGAAGATGCACCCGCCTATGCGACTCGTGGATTT TTGCTAGATGCTGGTCGCAAATGGTATTCACTCGAGTTTTTGAAAGATTTATGCACCTACGCCTCGTTCTTCAAA TTATCCGAGTTTCACTACCATGCGACCGACAACTATCCGCTGAGCCGCGGTCGAAACGTGACCTGGAACGAGATC TACTCGCAGTTTTCCTTGCACCCCGAAAGTGAGGCCCTCCGCCCTCTTGTCCAGCGTGCCAACGAAACGCTATCC CGGGCTGAGTTTGATGATTTCCAGCACCATTGTGCTCAGCGAGGTGTTACAGTGATACCGGAGATCGAAAGCCCC GGGCACTGTCTCACAGTTACGAAATGGAGACCTGAGCTCGCGTTAGAGTCGAGGGACCTGCTCAATCTCTCGCAT CCGGACACTGTTCCTTTGATGAAGTCCATCTGGACCGAATTTCTTCCTTGGTTCCACACAAAGGAGGTGCATATC GGTGCCGATGAGTACGACTCTGAATTTGCGGATGACTATGTTGAGTTCGTGAACGAGATGTCTCGCTTTGTACAA GCAGCTTCTGGCAAAAGTGTTCGTATTTGGGGGACATATGAGCCATCAAACATTCCCATTGACAAGAATGTGACA ATTCAACACTGGCAGTATGGACAATCAGATCCAGTTGACCTAGCCCAAAACGGCTACCAGATCATCAACTCCGAG GATTGGTGGGCATATATGTCGCTGAAAAGCAACCATGTGCCTATCACCCCAGCCCCTTATCCTCAGTTTTTCAAC AACGCCCGTGTTCTGAACTTCGCCGACCAGCACGGATGGCAGTGGACCCCTGGGCTCTTCAATCCGGTGAACAAA ACTGAACAACCCGATACCGAAGCTGTACTAGGTGCTCTCTTGGCTGCCTGGAATGACAGTGGCCCGGATGCCACT ACTCAGCTTGAGGCCTACTATGCCATTCGTGATGGCATCCCAGTCGTGGCTTCGCGAGTGTGGTGTGGTGCGCGT GGGCCTCCCTTGCATGAACCAACCTTGGCCAAATCCATCGCACAATTGTCCTCTCAAGCTGTGGGGCAAAATCTC GACCGCCGCGTTCCGGGAGAAAGGGCCCACGGATCAGGAACTTTGCTTTCATGGACAAGGCCAACTACCAGCCAG GATAAGCATAACCTCGGCTATGGAAGTAAGGGCATGGATTATACCCTTCAACTAAACGTCACGGGTCCTTTTTCT TTGCAGTCCTCCGATGCGACACTTACATTATCATCGGACGGTGAATTGGCTTTTGTTTCTGATGGATGGCCATAC CCACTTCGCTCTGTTGCTGAGGCTGACGCTTTTGACGAAGACCAGCCTGGAAGAATTTGGGTTAATAAGACCACG TCAACCCACAAGGCTGTCATAATCCCTCGCAAATCACAAGTCACTATCTCTACAAATGAGATATATGGAAGTCGC GTGTGGGTGGATGGTGACTTTGTCGGCCGCTTTGAAGTGTTTATCTATGGCGGAAAGAATAAAAATTTCTCATGG AGTCAGATGGCTTTTGTGGCCCCCTTGGATATTTTGGAAGGCCCGGGCTTGCAACACTTGGCTGTTTTTCAGGGT AGCAGGGAAGGTTGA |
| Gene | >Pro_DTO377G3_2|g8797.t1 ATGAAGTGGATTGTCCTCTCACTTGCCGCAGTCGCGTCTGCGCTGCAGATCCTACCCCCGGTGCACTTTGACAAC ACTGGCTCTGGTCATAACAAAGGCTTTTCGTTAGCAACCACCGACCGAACAATCTACCTAAGTGCCGATTTCGCT AGCTGGAAGGATCAGAATGGACTAACGCTGCTTCCACCATCGGCATCCGACTTTGCCAACACGTTTCGCGATGAT TTACAGGAGCTAACGAACAGTTCCTGGGAGCTTCGTACGGTCAAGCAATTCCCCAAACATGCGTCGGGAATATTT CTCGGGCGCACAGACCATCCCGACCGGTTTACGTACGAAAGTGGACGCCAGACCGAGGAGGGATATGAGCTGGAA ATACAAGATGGCAGTGTAGTTATTCGAGGCTCCGGGGCGCGAGGTATGTGGTGGGGAACGCGAACGCTCCTCCAG CAACTCGTTTTGACACGCTCATCCCTACAACCTGGTCGCGTGGAAGATGCACCCGCCTATGCGACTCGTGGATTT TTGCTAGATGCTGGTCGCAAATGGTATTCACTCGAGTTTTTGAAAGATTTATGCACCTACGCCTCGTTCTTCAAA TTATCCGAGTTTCACTACCATGCGACCGACAACTATCCGCTGAGCCGCGGTCGAAACGTGACCTGGAACGAGATC TACTCGCAGTTTTCCTTGCACCCCGAAAGTGAGGCCCTCCGCCCTCTTGTCCAGCGTGCCAACGAAACGCTATCC CGGGCTGAGTTTGATGATTTCCAGCACCATTGTGCTCAGCGAGGTGTTACAGTGATACCGGAGATCGAAAGCCCC GGGCACTGTCTCACAGTTACGAAATGGAGACCTGAGCTCGCGTTAGAGTCGAGGGACCTGCTCAATCTCTCGCAT CCGGACACTGTTCCTTTGATGAAGTCCATCTGGACCGAATTTCTTCCTTGGTTCCACACAAAGGAGGTGCATATC GGTGCCGATGAGTACGACTCTGAATTTGCGGATGACTATGTTGAGTTCGTGAACGAGATGTCTCGCTTTGTACAA GCAGCTTCTGGCAAAAGTGTTCGTATTTGGGGGACATATGAGCCATCAAACATTCCCATTGACAAGAATGTGACA ATTCAACACTGGCAGTATGGACAATCAGATCCAGTTGACCTAGCCCAAAACGGCTACCAGATCATCAACTCCGAG GATTGGTGGGCATATATGTCGCTGAAAAGCAACCATGTGCCTATCACCCCAGCCCCTTATCCTCAGTTTTTCAAC AACGCCCGTGTTCTGAACTTCGCCGACCAGCACGGATGGCAGTGGACCCCTGGGCTCTTCAATCCGGTGAACAAA ACTGAACAACCCGATACCGAAGCTGTACTAGGTGCTCTCTTGGCTGCCTGGAATGACAGTGGCCCGGATGCCACT ACTCAGCTTGAGGCCTACTATGCCATTCGTGATGGCATCCCAGTCGTGGCTTCGCGAGTGTGGTGTGGTGCGCGT GGGCCTCCCTTGCATGAACCAACCTTGGCCAAATCCATCGCACAATTGTCCTCTCAAGCTGTGGGGCAAAATCTC GACCGCCGCGTTCCGGGAGAAAGGGCCCACGGATCAGGAACTTTGCTTTCATGGACAAGGCCAACTACCAGCCAG GATAAGCATAACCTCGGCTATGGAAGTAAGGGCATGGATTATACCCTTCAACTAAACGTCACGGGTCCTTTTTCT TTGCAGTCCTCCGATGCGACACTTACATTATCATCGGACGGTGAATTGGCTTTTGTTTCTGATGGATGGCCATAC CCACTTCGCTCTGTTGCTGAGGCTGACGCTTTTGACGAAGACCAGCCTGGAAGAATTTGGGTTAATAAGACCACG TCAACCCACAAGGCTGTCATAATCCCTCGCAAATCACAAGTCACTATCTCTACAAATGAGATATATGGAAGTCGC GTGTGGGTGGATGGTGACTTTGTCGGCCGCTTTGAAGTGTTTATCTATGGCGGAAAGAATAAAAATTTCTCATGG AGTCAGATGGCTTTTGTGGCCCCCTTGGATATTTTGGAAGGCCCGGGCTTGCAACACTTGGCTGTTTTTCAGGGT AGCAGGGAAGGTTGA |