© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8775.t1 |
| Gene name | |
| Location | scaffold_37:42515..45023 |
| Strand | + |
| Gene length (bp) | 2508 |
| Transcript length (bp) | 1479 |
| Coding sequence length (bp) | 1479 |
| Protein length (aa) | 493 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00096 | zf-C2H2 | Zinc finger, C2H2 type | 1.3E-04 | 406 | 428 |
| PF00096 | zf-C2H2 | Zinc finger, C2H2 type | 9.8E-06 | 434 | 454 |
| PF13894 | zf-C2H2_4 | C2H2-type zinc finger | 2.4E-04 | 434 | 454 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.5 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| C2H2 zinc finger |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 46.05 | 27.13 | 64.98 |
| 5d_25C | Five days - 25 degrees Celsius | 33.60 | 18.59 | 48.60 |
| 7d_25C | Seven days - 25 degrees Celsius | 37.47 | 21.06 | 53.87 |
| 10d_25C | Ten days - 25 degrees Celsius | 35.08 | 19.97 | 50.18 |
| 7d_15C | Seven days - 15 degrees Celsius | 31.34 | 15.33 | 47.35 |
| 7d_30C | Seven days - 30 degrees Celsius | 64.21 | 36.39 | 92.03 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.207293 | no |
| 3d_25C | 7d_25C | 0.449755 | no |
| 3d_25C | 7d_15C | 0.151030 | no |
| 3d_25C | 7d_30C | 0.163666 | no |
| 3d_25C | 10d_25C | 0.272003 | no |
| 5d_25C | 7d_25C | 0.742090 | no |
| 5d_25C | 7d_15C | 0.858238 | no |
| 5d_25C | 7d_30C | 0.003197 | yes |
| 5d_25C | 10d_25C | 0.908063 | no |
| 7d_25C | 7d_15C | 0.586524 | no |
| 7d_25C | 7d_30C | 0.019090 | yes |
| 7d_25C | 10d_25C | 0.850150 | no |
| 7d_15C | 7d_30C | 0.004450 | yes |
| 7d_15C | 10d_25C | 0.748649 | no |
| 7d_30C | 10d_25C | 0.006371 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8775.t1 MCFFFPTNDRQDKLACLCLLYGLLVFWPFRSCPDRRSPLLDSTSPSGAVPGDRDWALNGSSFGQLSNINDPEFYV PVRDPSANLATLAAPAGMGPALDALSAPPLNIRRPAAPTLPSFELPPPPFTLGAGAAAPKYGHPTHPPVSHAPVN VSVGNLLTPPATIQAGEHATPQPLAPSTGASSELPPAYWSAANPYGQSWGSGVNPYSARSSFSPSSGMQRSSVIS PPTTDGLPHPYEGPTLSYQALPAPSTMPPSVSQPAMTMYHAGPATSPAPLQSNDPYAPKHQHMYAVSPPMHSPHQ AGFSPMYGPTGLGIHPPGRMPVHSPSAGQPPLGYPRQPWPSYSLPAMNGPVMTNVHSPGGPMSMMGGMQTGLLPG FNSGHVASSQHLYGGHPPPHGMAAPAADRPFKCDQCPQSFNRNHDLKRHKRIHLAVKPFPCSHCDKSFSRKDALK RHILVKGCGKDGDSDANSNQTGADIKGEGRSEDGSPLLNGRG* |
| Coding | >Pro_DTO377G3_2|g8775.t1 ATGTGTTTTTTTTTTCCAACGAATGACCGGCAAGACAAGCTCGCTTGCCTCTGCCTTCTCTATGGGCTTCTCGTA TTCTGGCCATTCCGGTCTTGTCCCGATCGACGATCGCCCCTCCTGGATTCTACCAGCCCTTCTGGGGCCGTACCT GGCGATCGAGATTGGGCGTTGAACGGATCTTCTTTCGGCCAGCTCTCCAATATCAACGACCCCGAATTCTACGTA CCAGTGAGGGACCCATCCGCCAATCTGGCGACTCTAGCAGCGCCGGCGGGAATGGGGCCAGCGTTAGACGCGCTG TCAGCCCCGCCGTTGAACATTCGTCGTCCTGCAGCCCCAACATTACCCAGCTTTGAGCTCCCACCTCCCCCGTTC ACGTTGGGTGCTGGCGCGGCAGCACCCAAGTACGGACATCCTACCCATCCCCCAGTCTCCCACGCGCCAGTGAAT GTGAGCGTGGGGAACTTACTAACGCCACCCGCCACAATTCAAGCAGGGGAACACGCCACACCCCAGCCATTGGCT CCTTCCACAGGCGCGTCCTCCGAGCTGCCGCCGGCATATTGGTCAGCCGCCAATCCATACGGACAGTCCTGGGGA TCCGGGGTAAATCCATACTCGGCTCGAAGTTCCTTCTCGCCGTCGTCCGGTATGCAGCGCTCATCGGTAATATCG CCGCCGACGACGGATGGGTTGCCGCACCCATATGAAGGGCCGACATTATCTTACCAAGCTTTACCCGCCCCGTCA ACCATGCCTCCCTCCGTGTCACAACCTGCCATGACCATGTACCATGCGGGACCCGCTACATCCCCCGCTCCACTG CAATCCAACGATCCATATGCCCCCAAACACCAGCATATGTATGCCGTTTCTCCTCCTATGCACAGTCCTCACCAG GCCGGCTTCTCTCCCATGTATGGCCCCACCGGGCTTGGCATCCACCCACCAGGACGAATGCCTGTTCACAGTCCA TCAGCCGGGCAACCGCCCTTAGGATATCCCCGCCAGCCATGGCCCTCCTATTCTCTCCCGGCGATGAACGGTCCC GTCATGACCAACGTGCACAGCCCCGGTGGGCCCATGTCGATGATGGGCGGAATGCAAACCGGGCTTCTACCAGGA TTCAACAGTGGCCATGTCGCCAGCTCTCAACATCTATATGGGGGCCATCCACCACCGCACGGCATGGCAGCCCCC GCGGCAGATCGACCGTTCAAATGCGACCAGTGCCCCCAGAGTTTCAACCGTAATCACGATCTGAAGCGCCATAAA CGTATTCATTTGGCCGTGAAGCCTTTCCCTTGCTCGCATTGTGACAAAAGCTTCTCGCGCAAGGATGCTCTTAAG CGACATATTCTTGTGAAAGGCTGCGGAAAGGACGGCGACTCGGATGCGAATAGCAACCAAACCGGGGCCGATATA AAGGGTGAAGGGCGGAGTGAAGACGGCAGTCCCCTCCTTAATGGACGAGGTTGA |
| Transcript | >Pro_DTO377G3_2|g8775.t1 ATGTGTTTTTTTTTTCCAACGAATGACCGGCAAGACAAGCTCGCTTGCCTCTGCCTTCTCTATGGGCTTCTCGTA TTCTGGCCATTCCGGTCTTGTCCCGATCGACGATCGCCCCTCCTGGATTCTACCAGCCCTTCTGGGGCCGTACCT GGCGATCGAGATTGGGCGTTGAACGGATCTTCTTTCGGCCAGCTCTCCAATATCAACGACCCCGAATTCTACGTA CCAGTGAGGGACCCATCCGCCAATCTGGCGACTCTAGCAGCGCCGGCGGGAATGGGGCCAGCGTTAGACGCGCTG TCAGCCCCGCCGTTGAACATTCGTCGTCCTGCAGCCCCAACATTACCCAGCTTTGAGCTCCCACCTCCCCCGTTC ACGTTGGGTGCTGGCGCGGCAGCACCCAAGTACGGACATCCTACCCATCCCCCAGTCTCCCACGCGCCAGTGAAT GTGAGCGTGGGGAACTTACTAACGCCACCCGCCACAATTCAAGCAGGGGAACACGCCACACCCCAGCCATTGGCT CCTTCCACAGGCGCGTCCTCCGAGCTGCCGCCGGCATATTGGTCAGCCGCCAATCCATACGGACAGTCCTGGGGA TCCGGGGTAAATCCATACTCGGCTCGAAGTTCCTTCTCGCCGTCGTCCGGTATGCAGCGCTCATCGGTAATATCG CCGCCGACGACGGATGGGTTGCCGCACCCATATGAAGGGCCGACATTATCTTACCAAGCTTTACCCGCCCCGTCA ACCATGCCTCCCTCCGTGTCACAACCTGCCATGACCATGTACCATGCGGGACCCGCTACATCCCCCGCTCCACTG CAATCCAACGATCCATATGCCCCCAAACACCAGCATATGTATGCCGTTTCTCCTCCTATGCACAGTCCTCACCAG GCCGGCTTCTCTCCCATGTATGGCCCCACCGGGCTTGGCATCCACCCACCAGGACGAATGCCTGTTCACAGTCCA TCAGCCGGGCAACCGCCCTTAGGATATCCCCGCCAGCCATGGCCCTCCTATTCTCTCCCGGCGATGAACGGTCCC GTCATGACCAACGTGCACAGCCCCGGTGGGCCCATGTCGATGATGGGCGGAATGCAAACCGGGCTTCTACCAGGA TTCAACAGTGGCCATGTCGCCAGCTCTCAACATCTATATGGGGGCCATCCACCACCGCACGGCATGGCAGCCCCC GCGGCAGATCGACCGTTCAAATGCGACCAGTGCCCCCAGAGTTTCAACCGTAATCACGATCTGAAGCGCCATAAA CGTATTCATTTGGCCGTGAAGCCTTTCCCTTGCTCGCATTGTGACAAAAGCTTCTCGCGCAAGGATGCTCTTAAG CGACATATTCTTGTGAAAGGCTGCGGAAAGGACGGCGACTCGGATGCGAATAGCAACCAAACCGGGGCCGATATA AAGGGTGAAGGGCGGAGTGAAGACGGCAGTCCCCTCCTTAATGGACGAGGTTGA |
| Gene | >Pro_DTO377G3_2|g8775.t1 ATGTGTTTTTTTTTTCCAACGAATGACCGGCAAGACAAGCTCGCTTGCCTCTGCCTTCTCTATGGGCTTCTCGTA TTCTGGCCATTCCGGTCTTGTCCGTGCGTTGACATGTTGGTCTCCTTATTGGATGGGAATCTTACCGTGATAGTA GAAAAGTATGGATCCCATTTCTTTTTCCCTTTTTCCCTTTTTCTTTTCCCAAACGAAATAAATTTCTTTCTCTCA GCCGGATCCACTCTTTTGCTAGCACAGATTCTCTCCGGAGTCCCTACACTAGCGCATTTATTTTCACGCGATCAG TCGGACGCAAGGGATTTCCCTCGAGGAAGAAGGGTCTTTTTGGGTTTTCAGCTATCAAATAGGTAGTATACATAT ATTGTGGGCTATCTTGTTCTGAAGTTGATAACAGAAAGTAGGCACGAAGAAACCAAATCCCTGGATTGTATATAT CAAGACAAATAATATAAATTCCAGTCGACAATCCGGAACAGCCCTGGAAGCCAACCGGTAGTTAGTTAGCTGTCA ACCACGTTCTGCTGACACCCCTCTGCTCGCCTTTTTCGCCCTTTTTTTTCCCGTGCTTTTCTATTTAATATACAA TATATACGACTGTTTTCATTATCCCATTCCTTTCCCCACGGTGGCCACCTGGCTAGACCCGCGTCGACTCCATTC CCCAAAGAGAAAAATCCATCTTATTTACTTTTGTGCTTCTTCTGTTAATTATACCTAGGCAACTCCTGACATCTC TTATTAGTATAACACTTCCCCCGCGCTTGCTATCGCCTCCAACGCCACGGTCCTTTGCCCACCTCCCCCCCCCCA CATCTCTCTTCCTCTCAGCTTCACTTTCTTAGTGTTTCGACTTTCACTCATTTCTCCCCCCCGAGACCATGTACT ACACGCGCTTTCGTCGACCGTGACAATCTCACCTCCCGTGTCTTTTTTCGGATTTCTTTTATTACCATTGTCACT TTATTTCGAGAGTTCTCTAGTCCCTCCGGAAATTCCCCTATTTCTTGGAGAACCGGAGTCCCTCGACTCTCTTCC ATATACCGATCGCGAGCCCCAGCGATCGACGATCGCCCCTCCTGGATTCTACCAGCCCTTCTGGGGCCGTACCTG GCGATCGAGATTGGGCGTTGAACGGATCTTCTTTCGGCCAGCTCTCCAATATCAACGACCCCGAATTCTACGTAC CAGTGAGGGACCCATCCGCCAATCTGGCGACTCTAGCAGCGCCGGCGGGAATGGGGCCAGCGTTAGACGCGCTGT CAGCCCCGCCGTTGAACATTCGTCGTCCTGCAGCCCCAACATTACCCAGCTTTGAGCTCCCACCTCCCCCGTTCA CGTTGGGTGCTGGCGCGGCAGCACCCAAGTACGGACATCCTACCCATCCCCCAGTCTCCCACGCGCCAGTGAATG TGAGCGTGGGGAACTTACTAACGCCACCCGCCACAATTCAAGCAGGGGAACACGCCACACCCCAGCCATTGGCTC CTTCCACAGGCGCGTCCTCCGAGCTGCCGCCGGCATATTGGTCAGCCGCCAATCCATACGGACAGTCCTGGGGAT CCGGGGTAAATCCATACTCGGCTCGAAGTTCCTTCTCGCCGTCGTCCGGTATGCAGCGCTCATCGGTAATATCGC CGCCGACGACGGATGGGTTGCCGCACCCATATGAAGGGCCGACATTATCTTACCAAGCTTTACCCGCCCCGTCAA CCATGCCTCCCTCCGTGTCACAACCTGCCATGACCATGTACCATGCGGGACCCGCTACATCCCCCGCTCCACTGC AATCCAACGATCCATATGCCCCCAAACACCAGCATATGTATGCCGTTTCTCCTCCTATGCACAGTCCTCACCAGG CCGGCTTCTCTCCCATGTATGGCCCCACCGGGCTTGGCATCCACCCACCAGGACGAATGCCTGTTCACAGTCCAT CAGCCGGGCAACCGCCCTTAGGATATCCCCGCCAGCCATGGCCCTCCTATTCTCTCCCGGCGATGAACGGTCCCG TCATGACCAACGTGCACAGCCCCGGTGGGCCCATGTCGATGATGGGCGGAATGCAAACCGGGCTTCTACCAGGAT TCAACAGTGGCCATGTCGCCAGCTCTCAACATCTATATGGGGGCCATCCACCACCGCACGGCATGGCAGCCCCCG CGGCAGATCGACCGTTCAAATGCGACCAGTGCCCCCAGAGTTTCAACCGTAATCACGATCTGAAGCGCCATAAAC GTATTCATTTGGCCGTGAAGCCTTTCCCTTGCTCGCATTGTGACAAAAGCTTCTCGCGCAAGGATGCTCTTAAGG TATGTCATCTGCAGTCTCATATGACAATTCCCACATACTGACTTTTGCCGACAGCGACATATTCTTGTGAAAGGC TGCGGAAAGGACGGCGACTCGGATGCGAATAGCAACCAAACCGGGGCCGATATAAAGGGTGAAGGGCGGAGTGAA GACGGCAGTCCCCTCCTTAATGGACGAGGTTGA |