© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8756.t1 |
| Gene name | |
| Location | scaffold_36:220023..220952 |
| Strand | - |
| Gene length (bp) | 929 |
| Transcript length (bp) | 873 |
| Coding sequence length (bp) | 873 |
| Protein length (aa) | 291 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00462 | Glutaredoxin | Glutaredoxin | 1.0E-17 | 197 | 261 |
| PF00085 | Thioredoxin | Thioredoxin | 9.5E-12 | 7 | 102 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0097573 | glutathione oxidoreductase activity | Yes |
| GO:0016491 | oxidoreductase activity | No |
| GO:0015035 | protein-disulfide reductase activity | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0015036 | disulfide oxidoreductase activity | No |
| GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 36 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 118.74 | 71.80 | 165.69 |
| 5d_25C | Five days - 25 degrees Celsius | 134.55 | 81.85 | 187.25 |
| 7d_25C | Seven days - 25 degrees Celsius | 134.06 | 81.36 | 186.77 |
| 10d_25C | Ten days - 25 degrees Celsius | 191.74 | 116.71 | 266.77 |
| 7d_15C | Seven days - 15 degrees Celsius | 113.02 | 67.93 | 158.11 |
| 7d_30C | Seven days - 30 degrees Celsius | 125.48 | 76.13 | 174.84 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.650583 | no |
| 3d_25C | 7d_25C | 0.662977 | no |
| 3d_25C | 7d_15C | 0.878467 | no |
| 3d_25C | 7d_30C | 0.862109 | no |
| 3d_25C | 10d_25C | 0.019353 | yes |
| 5d_25C | 7d_25C | 0.992250 | no |
| 5d_25C | 7d_15C | 0.503412 | no |
| 5d_25C | 7d_30C | 0.820050 | no |
| 5d_25C | 10d_25C | 0.105018 | no |
| 7d_25C | 7d_15C | 0.519033 | no |
| 7d_25C | 7d_30C | 0.831320 | no |
| 7d_25C | 10d_25C | 0.102131 | no |
| 7d_15C | 7d_30C | 0.719252 | no |
| 7d_15C | 10d_25C | 0.011062 | yes |
| 7d_30C | 10d_25C | 0.040807 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8756.t1 MSTLIEITSEADFSSHLSSLSPSALVVLYFHTPWAAPCAQMGAVLSALASQYPATTPPTISFVSINAEELPDISE EYDVSAVPFVVCLRSGQILESISGSDAVKVRDAVERHAGRGNVAGAVGPMDGVKANIPPPLSAVAREDGPFTATQ SPVTAAEPPSADAANATAVASAPTLTPEQSREALFARLEQLVNAASVMLFMKGTPSSPQCGFSRQLVGILRERSV KYGFFNILADEDVRQGLKEYAEWPTFPQLWVNGELVGGLDIVREEINSDPDFLNDHSVNKPTAAA* |
| Coding | >Pro_DTO377G3_2|g8756.t1 ATGTCGACACTCATCGAAATCACGTCTGAGGCCGACTTCTCCTCGCATCTTTCTTCCCTATCGCCGTCTGCATTA GTTGTCCTATACTTCCATACTCCATGGGCAGCCCCGTGCGCGCAGATGGGCGCAGTACTCTCAGCCCTCGCTTCG CAGTACCCCGCCACTACCCCGCCCACTATCTCGTTTGTCAGCATCAACGCCGAGGAGCTACCTGACATCTCGGAA GAGTATGACGTTTCAGCCGTGCCGTTCGTTGTGTGCTTACGCAGCGGCCAAATATTAGAGTCGATCAGTGGAAGT GATGCCGTCAAGGTTCGTGACGCTGTCGAGCGCCACGCTGGCCGCGGAAATGTCGCGGGTGCCGTCGGTCCGATG GACGGTGTGAAAGCCAACATTCCTCCGCCGCTATCTGCTGTTGCTCGTGAGGATGGCCCCTTCACTGCTACTCAG TCTCCTGTTACCGCTGCTGAGCCCCCTTCTGCTGATGCGGCTAATGCAACCGCCGTCGCGTCTGCCCCCACCCTG ACACCCGAACAATCCCGGGAGGCACTATTTGCCCGCCTTGAGCAACTGGTCAACGCAGCATCTGTCATGCTGTTC ATGAAAGGAACCCCGAGCAGCCCACAATGCGGATTCAGTCGGCAGCTGGTTGGAATTCTACGCGAGCGTAGTGTC AAGTACGGCTTCTTCAATATCTTGGCCGATGAGGATGTGCGCCAGGGTCTGAAGGAGTACGCTGAGTGGCCAACT TTCCCTCAATTGTGGGTGAACGGGGAATTGGTGGGTGGCTTGGATATTGTCCGTGAGGAAATCAACAGCGACCCC GACTTCCTCAATGATCACTCAGTTAACAAACCCACCGCGGCTGCCTGA |
| Transcript | >Pro_DTO377G3_2|g8756.t1 ATGTCGACACTCATCGAAATCACGTCTGAGGCCGACTTCTCCTCGCATCTTTCTTCCCTATCGCCGTCTGCATTA GTTGTCCTATACTTCCATACTCCATGGGCAGCCCCGTGCGCGCAGATGGGCGCAGTACTCTCAGCCCTCGCTTCG CAGTACCCCGCCACTACCCCGCCCACTATCTCGTTTGTCAGCATCAACGCCGAGGAGCTACCTGACATCTCGGAA GAGTATGACGTTTCAGCCGTGCCGTTCGTTGTGTGCTTACGCAGCGGCCAAATATTAGAGTCGATCAGTGGAAGT GATGCCGTCAAGGTTCGTGACGCTGTCGAGCGCCACGCTGGCCGCGGAAATGTCGCGGGTGCCGTCGGTCCGATG GACGGTGTGAAAGCCAACATTCCTCCGCCGCTATCTGCTGTTGCTCGTGAGGATGGCCCCTTCACTGCTACTCAG TCTCCTGTTACCGCTGCTGAGCCCCCTTCTGCTGATGCGGCTAATGCAACCGCCGTCGCGTCTGCCCCCACCCTG ACACCCGAACAATCCCGGGAGGCACTATTTGCCCGCCTTGAGCAACTGGTCAACGCAGCATCTGTCATGCTGTTC ATGAAAGGAACCCCGAGCAGCCCACAATGCGGATTCAGTCGGCAGCTGGTTGGAATTCTACGCGAGCGTAGTGTC AAGTACGGCTTCTTCAATATCTTGGCCGATGAGGATGTGCGCCAGGGTCTGAAGGAGTACGCTGAGTGGCCAACT TTCCCTCAATTGTGGGTGAACGGGGAATTGGTGGGTGGCTTGGATATTGTCCGTGAGGAAATCAACAGCGACCCC GACTTCCTCAATGATCACTCAGTTAACAAACCCACCGCGGCTGCCTGA |
| Gene | >Pro_DTO377G3_2|g8756.t1 ATGTCGACACTCATCGAAATCACGTCTGAGGCCGACTTCTCCTCGCATCTTTCTTCCCTATCGCCGTCTGCATTA GTTGTCCTATACTTCCATACTCCATGGGCAGCCCCGTGCGCGCAGATGGGCGCAGTACTCTCAGCCCTCGCTTCG CAGTACCCCGCCACTACCCCGCCCACTATCTCGTTTGTCAGCATCAACGCCGAGGAGCTACCTGACATCTCGGAA GAGTATGACGTTTCAGCCGTGCCGTTCGTTGTGTGCTTACGCAGCGGCCAAATATTAGAGTCGATCAGTGGAAGT GATGCCGTCAAGGTTCGTGACGCTGTCGAGCGCCACGCTGGCCGCGGAAATGTCGCGGGTGCCGTCGGTCCGATG GACGGTGTGAAAGCCAACATTCCTCCGCCGCTATCTGCTGTTGCTCGTGAGGATGGCCCCTTCACTGCTACTCAG TCTCCTGTTACCGCTGCTGAGCCCCCTTCTGCTGATGCGGCTAATGCAACCGCCGTCGCGTCTGCCCCCACCCTG ACACCCGAACAATCCCGGGAGGCACTATTTGCCCGCCTTGAGCAACTGGTCAACGCAGCATCTGTCATGCTGTTC ATGAAAGGAACCCCGAGCAGCCCACAATGCGGATTCAGTCGGCAGCTGGTTGGAATTCTACGCGAGCGTAGTGTC AAGTACGGCTTCTTCAATATCTTGGCCGATGAGGATGTGCGCCAGGGTCTGAAGGAGTACGCTGAGTGGCCAACT TTCCCTCAATTGTGGGTGAACGGGGAATTGGTGGGTGGCTTGGATATTGTACGTGTTCCGTCACACTCCACTTCT TTGATTCGATTATTAACCCTATGGTATAGGTCCGTGAGGAAATCAACAGCGACCCCGACTTCCTCAATGATCACT CAGTTAACAAACCCACCGCGGCTGCCTGA |