© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8755.t1 |
| Gene name | |
| Location | scaffold_36:217933..219412 |
| Strand | + |
| Gene length (bp) | 1479 |
| Transcript length (bp) | 1479 |
| Coding sequence length (bp) | 1479 |
| Protein length (aa) | 493 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02668 | TauD | Taurine catabolism dioxygenase TauD, TfdA family | 4.7E-47 | 216 | 455 |
| PF06155 | GBBH-like_N | Gamma-butyrobetaine hydroxylase-like, N-terminal | 2.3E-06 | 100 | 165 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 23.29 | 12.32 | 34.26 |
| 5d_25C | Five days - 25 degrees Celsius | 19.23 | 9.61 | 28.84 |
| 7d_25C | Seven days - 25 degrees Celsius | 16.08 | 7.74 | 24.41 |
| 10d_25C | Ten days - 25 degrees Celsius | 17.02 | 8.29 | 25.75 |
| 7d_15C | Seven days - 15 degrees Celsius | 19.13 | 9.51 | 28.74 |
| 7d_30C | Seven days - 30 degrees Celsius | 21.77 | 11.26 | 32.29 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.563061 | no |
| 3d_25C | 7d_25C | 0.196488 | no |
| 3d_25C | 7d_15C | 0.543561 | no |
| 3d_25C | 7d_30C | 0.864327 | no |
| 3d_25C | 10d_25C | 0.273843 | no |
| 5d_25C | 7d_25C | 0.616418 | no |
| 5d_25C | 7d_15C | 0.990640 | no |
| 5d_25C | 7d_30C | 0.736715 | no |
| 5d_25C | 10d_25C | 0.743571 | no |
| 7d_25C | 7d_15C | 0.623564 | no |
| 7d_25C | 7d_30C | 0.319915 | no |
| 7d_25C | 10d_25C | 0.893211 | no |
| 7d_15C | 7d_30C | 0.723264 | no |
| 7d_15C | 10d_25C | 0.755298 | no |
| 7d_30C | 10d_25C | 0.429436 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8755.t1 MHRLRASATFWQLPRALLYSTPRRNFIATPSRFNSPVEPDSHDKLESLAPGIDHPLPIPQDPSNSKGDVPDLTPE VVTRKTHGNGILKVGKKESIWTGKEELYLHMDKYTTLKLPYTYLRDSCQCVVCKDQHSKQRSFRTSDIPKDIVPS WVNWDGNKLSIRWDKDIGGSQTVHESTWARDFLKNPIFNTHDQHRSVNSKPIMWGQAKMEKSQHWVSYPDYITDN SKLATAMHQLQRLGLIFVKDVPDSRSMVEAIATRMGPLRNTFYGSTFDVRTVPEATNVAYTNQFLGFHMDLMYMN EPPGYQLLHCLQNSCSGGESLFADTFSAAKLMKEQYPKEYQVLSEQRLGYEYRHEDHIYYNERPVFEHDSDTDEL RHVNYSPPFQSPLPNSHDAEHVNKLLDALAKFTSIIDNPNSIFELKLNPGDCVIFDNRRIVHARRQFNASVGSRW LAGAYVDTDALLSRFAVCKNQHPYVWTKKAQKELAGNNSGNN* |
| Coding | >Pro_DTO377G3_2|g8755.t1 ATGCATCGTCTCCGAGCTTCAGCTACCTTCTGGCAATTGCCAAGGGCCTTATTATACTCTACCCCGCGCCGTAAC TTCATAGCTACCCCGAGTAGGTTCAACAGCCCCGTAGAGCCAGACTCTCACGACAAATTGGAATCTCTCGCCCCA GGAATTGACCATCCACTTCCCATACCACAAGACCCCAGCAACTCTAAGGGGGACGTGCCAGACCTCACCCCCGAG GTGGTGACAAGAAAAACCCATGGGAATGGCATCCTAAAAGTGGGCAAAAAAGAGTCGATCTGGACTGGAAAAGAG GAATTGTACTTGCATATGGACAAATACACAACACTCAAATTGCCATATACTTACCTGCGCGATTCATGCCAGTGT GTAGTGTGCAAGGATCAACACTCGAAGCAGCGCTCATTCCGCACAAGTGACATTCCCAAGGACATTGTTCCAAGC TGGGTTAATTGGGATGGGAACAAGCTATCAATCCGGTGGGACAAAGACATTGGGGGGTCACAGACTGTACACGAA TCAACCTGGGCCCGTGACTTTCTAAAGAATCCCATTTTCAACACTCATGATCAGCATCGGAGCGTGAACTCCAAA CCGATCATGTGGGGACAGGCTAAAATGGAGAAAAGTCAACATTGGGTGTCTTACCCGGACTATATCACCGATAAT TCCAAACTTGCCACTGCGATGCACCAGTTGCAGCGTCTGGGCCTTATTTTTGTGAAGGATGTTCCAGACTCACGA TCGATGGTTGAAGCCATTGCAACACGAATGGGACCACTACGAAACACCTTCTACGGATCAACATTCGACGTGCGC ACCGTCCCAGAGGCAACAAATGTCGCATATACAAACCAGTTCCTTGGGTTTCACATGGACTTGATGTATATGAAC GAGCCACCCGGATACCAACTCCTCCACTGTCTGCAGAACTCCTGCTCGGGAGGCGAGTCACTGTTCGCCGACACA TTTTCGGCCGCGAAACTCATGAAGGAGCAATACCCAAAAGAGTATCAAGTGCTAAGCGAGCAGCGGCTGGGGTAC GAGTACAGGCACGAGGACCACATCTACTACAACGAACGACCCGTCTTTGAGCATGATTCCGACACAGACGAGCTG CGCCATGTCAACTATTCGCCCCCCTTTCAGTCTCCCCTCCCGAATAGCCATGATGCTGAGCATGTGAACAAGCTA CTAGATGCGCTTGCGAAGTTCACTTCGATTATTGATAATCCAAATAGCATCTTTGAGCTCAAGCTTAACCCGGGT GATTGTGTCATCTTTGATAACAGAAGAATCGTTCATGCCCGCCGCCAATTCAATGCCAGCGTGGGGTCTCGATGG TTAGCAGGCGCATATGTCGATACGGATGCTCTGCTATCCCGCTTTGCTGTCTGTAAGAATCAGCATCCGTATGTT TGGACGAAAAAGGCACAGAAAGAGTTGGCGGGTAACAATAGTGGCAACAACTAG |
| Transcript | >Pro_DTO377G3_2|g8755.t1 ATGCATCGTCTCCGAGCTTCAGCTACCTTCTGGCAATTGCCAAGGGCCTTATTATACTCTACCCCGCGCCGTAAC TTCATAGCTACCCCGAGTAGGTTCAACAGCCCCGTAGAGCCAGACTCTCACGACAAATTGGAATCTCTCGCCCCA GGAATTGACCATCCACTTCCCATACCACAAGACCCCAGCAACTCTAAGGGGGACGTGCCAGACCTCACCCCCGAG GTGGTGACAAGAAAAACCCATGGGAATGGCATCCTAAAAGTGGGCAAAAAAGAGTCGATCTGGACTGGAAAAGAG GAATTGTACTTGCATATGGACAAATACACAACACTCAAATTGCCATATACTTACCTGCGCGATTCATGCCAGTGT GTAGTGTGCAAGGATCAACACTCGAAGCAGCGCTCATTCCGCACAAGTGACATTCCCAAGGACATTGTTCCAAGC TGGGTTAATTGGGATGGGAACAAGCTATCAATCCGGTGGGACAAAGACATTGGGGGGTCACAGACTGTACACGAA TCAACCTGGGCCCGTGACTTTCTAAAGAATCCCATTTTCAACACTCATGATCAGCATCGGAGCGTGAACTCCAAA CCGATCATGTGGGGACAGGCTAAAATGGAGAAAAGTCAACATTGGGTGTCTTACCCGGACTATATCACCGATAAT TCCAAACTTGCCACTGCGATGCACCAGTTGCAGCGTCTGGGCCTTATTTTTGTGAAGGATGTTCCAGACTCACGA TCGATGGTTGAAGCCATTGCAACACGAATGGGACCACTACGAAACACCTTCTACGGATCAACATTCGACGTGCGC ACCGTCCCAGAGGCAACAAATGTCGCATATACAAACCAGTTCCTTGGGTTTCACATGGACTTGATGTATATGAAC GAGCCACCCGGATACCAACTCCTCCACTGTCTGCAGAACTCCTGCTCGGGAGGCGAGTCACTGTTCGCCGACACA TTTTCGGCCGCGAAACTCATGAAGGAGCAATACCCAAAAGAGTATCAAGTGCTAAGCGAGCAGCGGCTGGGGTAC GAGTACAGGCACGAGGACCACATCTACTACAACGAACGACCCGTCTTTGAGCATGATTCCGACACAGACGAGCTG CGCCATGTCAACTATTCGCCCCCCTTTCAGTCTCCCCTCCCGAATAGCCATGATGCTGAGCATGTGAACAAGCTA CTAGATGCGCTTGCGAAGTTCACTTCGATTATTGATAATCCAAATAGCATCTTTGAGCTCAAGCTTAACCCGGGT GATTGTGTCATCTTTGATAACAGAAGAATCGTTCATGCCCGCCGCCAATTCAATGCCAGCGTGGGGTCTCGATGG TTAGCAGGCGCATATGTCGATACGGATGCTCTGCTATCCCGCTTTGCTGTCTGTAAGAATCAGCATCCGTATGTT TGGACGAAAAAGGCACAGAAAGAGTTGGCGGGTAACAATAGTGGCAACAACTAG |
| Gene | >Pro_DTO377G3_2|g8755.t1 ATGCATCGTCTCCGAGCTTCAGCTACCTTCTGGCAATTGCCAAGGGCCTTATTATACTCTACCCCGCGCCGTAAC TTCATAGCTACCCCGAGTAGGTTCAACAGCCCCGTAGAGCCAGACTCTCACGACAAATTGGAATCTCTCGCCCCA GGAATTGACCATCCACTTCCCATACCACAAGACCCCAGCAACTCTAAGGGGGACGTGCCAGACCTCACCCCCGAG GTGGTGACAAGAAAAACCCATGGGAATGGCATCCTAAAAGTGGGCAAAAAAGAGTCGATCTGGACTGGAAAAGAG GAATTGTACTTGCATATGGACAAATACACAACACTCAAATTGCCATATACTTACCTGCGCGATTCATGCCAGTGT GTAGTGTGCAAGGATCAACACTCGAAGCAGCGCTCATTCCGCACAAGTGACATTCCCAAGGACATTGTTCCAAGC TGGGTTAATTGGGATGGGAACAAGCTATCAATCCGGTGGGACAAAGACATTGGGGGGTCACAGACTGTACACGAA TCAACCTGGGCCCGTGACTTTCTAAAGAATCCCATTTTCAACACTCATGATCAGCATCGGAGCGTGAACTCCAAA CCGATCATGTGGGGACAGGCTAAAATGGAGAAAAGTCAACATTGGGTGTCTTACCCGGACTATATCACCGATAAT TCCAAACTTGCCACTGCGATGCACCAGTTGCAGCGTCTGGGCCTTATTTTTGTGAAGGATGTTCCAGACTCACGA TCGATGGTTGAAGCCATTGCAACACGAATGGGACCACTACGAAACACCTTCTACGGATCAACATTCGACGTGCGC ACCGTCCCAGAGGCAACAAATGTCGCATATACAAACCAGTTCCTTGGGTTTCACATGGACTTGATGTATATGAAC GAGCCACCCGGATACCAACTCCTCCACTGTCTGCAGAACTCCTGCTCGGGAGGCGAGTCACTGTTCGCCGACACA TTTTCGGCCGCGAAACTCATGAAGGAGCAATACCCAAAAGAGTATCAAGTGCTAAGCGAGCAGCGGCTGGGGTAC GAGTACAGGCACGAGGACCACATCTACTACAACGAACGACCCGTCTTTGAGCATGATTCCGACACAGACGAGCTG CGCCATGTCAACTATTCGCCCCCCTTTCAGTCTCCCCTCCCGAATAGCCATGATGCTGAGCATGTGAACAAGCTA CTAGATGCGCTTGCGAAGTTCACTTCGATTATTGATAATCCAAATAGCATCTTTGAGCTCAAGCTTAACCCGGGT GATTGTGTCATCTTTGATAACAGAAGAATCGTTCATGCCCGCCGCCAATTCAATGCCAGCGTGGGGTCTCGATGG TTAGCAGGCGCATATGTCGATACGGATGCTCTGCTATCCCGCTTTGCTGTCTGTAAGAATCAGCATCCGTATGTT TGGACGAAAAAGGCACAGAAAGAGTTGGCGGGTAACAATAGTGGCAACAACTAG |