© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8732.t1 |
| Gene name | |
| Location | scaffold_36:153510..155797 |
| Strand | + |
| Gene length (bp) | 2287 |
| Transcript length (bp) | 1908 |
| Coding sequence length (bp) | 1908 |
| Protein length (aa) | 636 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06964 | Alpha-L-AF_C | Alpha-L-arabinofuranosidase C-terminal domain | 2.9E-23 | 458 | 628 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046373 | L-arabinose metabolic process | Yes |
| GO:0046556 | alpha-L-arabinofuranosidase activity | Yes |
| GO:0005996 | monosaccharide metabolic process | No |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0019566 | arabinose metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0005975 | carbohydrate metabolic process | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | No |
| GO:0019321 | pentose metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 18 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.85 | 0.04 | 1.66 |
| 5d_25C | Five days - 25 degrees Celsius | 0.47 | 0.00 | 1.00 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.51 | 0.00 | 1.13 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.36 | 0.00 | 0.85 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.50 | 0.00 | 1.06 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.44 | 0.19 | 2.68 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.367062 | no |
| 3d_25C | 7d_25C | 0.494636 | no |
| 3d_25C | 7d_15C | 0.445629 | no |
| 3d_25C | 7d_30C | 0.348389 | no |
| 3d_25C | 10d_25C | 0.264158 | no |
| 5d_25C | 7d_25C | 1.000000 | no |
| 5d_25C | 7d_15C | 1.000000 | no |
| 5d_25C | 7d_30C | 0.047134 | yes |
| 5d_25C | 10d_25C | 1.000000 | no |
| 7d_25C | 7d_15C | 1.000000 | no |
| 7d_25C | 7d_30C | 0.112039 | no |
| 7d_25C | 10d_25C | 1.000000 | no |
| 7d_15C | 7d_30C | 0.073633 | no |
| 7d_15C | 10d_25C | 1.000000 | no |
| 7d_30C | 10d_25C | 0.078639 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8732.t1 MLHKYLLLPLLASYGAAVTISVAKSGGNATSGLQYGAMEEEINHCGEGGLYAELIRNRAFQGSPKFPSSLDAWSG VGDSSLSLKNLTDPLSTALPTSINVKGTGTTGLTNAGFWGIDVRPQKYTGSFYVKGSYSGSFTASLLSSSGEVLA TTKIASKSVADDWVQHDFVLTPKAKASDTKNTFSLTFDGSSASNGSLDFNLISLFPPTWNDRPNGMRKDLMQAMA DMGPKFLRFPGGNNLEGDSIDGRWKWNETIGPLTDRPGRATTWQYQETLGLGLVEYMEWCDDLGMEPILAVWAGL ALNGEVVPEADLDFYVQDALNEIEFLTGSVDTEYGALRAKVGHPEPWTIRYVEVGNEDMLSSGLASYESYRFSAF YEAITAKYPDIQVLASTIDITIPGNAGGDYHLYDVPDNFVSKFHMFDSYTSEHPILLGEIAVTESNNGVGIDWSN THFGLYPWWIGSIAEAVFLLGAERNADAIIGTTYAPFLMNLDSYQWSPTILSFNSDPDQTARSTSWHLYTLFNHN LMTNTLPSTSSDDFGPLYYATGLNSKTNSHIFKAAVYNSTSDVPVSLTFEGVGRGTKADLTILTAPDPFSVNEVG GTNIVNSKTTQIKAGKKGEFSFKLPNLSIAVLTTS* |
| Coding | >Pro_DTO377G3_2|g8732.t1 ATGCTGCACAAATATCTTCTTCTGCCGCTTTTGGCGTCATATGGTGCCGCGGTCACTATTTCTGTAGCAAAATCT GGAGGCAATGCTACATCAGGTCTGCAATATGGTGCAATGGAAGAGGAAATCAACCATTGTGGCGAAGGAGGTCTC TATGCTGAATTGATCCGAAACAGAGCATTCCAAGGAAGTCCAAAGTTCCCTTCATCATTGGACGCCTGGTCTGGT GTTGGGGACTCATCGCTGTCCCTAAAGAACCTCACTGACCCACTGTCTACTGCCCTTCCAACTTCAATCAATGTC AAGGGTACTGGCACAACTGGGTTGACTAATGCGGGTTTCTGGGGAATTGACGTCCGTCCTCAGAAGTATACTGGG TCATTCTATGTGAAAGGCTCTTACTCGGGCTCCTTCACGGCTTCTCTCCTCTCGTCCAGCGGCGAAGTTTTGGCC ACTACTAAGATTGCTTCAAAGAGTGTTGCAGATGACTGGGTGCAGCATGATTTTGTTCTTACTCCCAAAGCAAAG GCTTCCGATACCAAGAATACGTTCTCCCTGACCTTCGATGGCTCGAGCGCATCGAATGGCTCACTTGATTTTAAT CTGATCAGCTTATTCCCACCCACATGGAATGATCGCCCCAATGGCATGCGGAAAGACTTGATGCAAGCCATGGCC GATATGGGCCCCAAATTCCTCCGCTTCCCTGGTGGAAATAACCTCGAGGGTGACAGCATCGACGGACGCTGGAAG TGGAACGAAACCATTGGACCACTCACAGACCGACCTGGTCGCGCAACCACTTGGCAATACCAAGAGACCCTTGGA TTAGGCTTGGTTGAGTATATGGAGTGGTGCGACGATCTTGGAATGGAGCCTATCCTGGCGGTTTGGGCTGGACTC GCTCTGAACGGAGAAGTTGTCCCCGAGGCAGATCTCGATTTCTATGTGCAAGATGCCCTCAATGAGATCGAGTTC TTGACTGGCTCTGTTGATACCGAGTACGGCGCTCTGCGTGCCAAGGTTGGACACCCAGAACCCTGGACAATTCGG TATGTCGAGGTTGGAAATGAGGATATGCTGAGTAGTGGTCTGGCATCGTACGAGTCCTACAGGTTCTCGGCCTTC TACGAGGCTATTACGGCCAAGTACCCCGATATCCAGGTCCTTGCATCTACTATAGATATCACGATTCCTGGAAAT GCAGGTGGTGATTACCATTTGTATGATGTCCCGGATAACTTCGTCAGCAAGTTCCACATGTTCGATAGTTATACA TCCGAGCATCCTATTTTGCTTGGTGAGATTGCTGTTACTGAGTCAAATAACGGAGTTGGCATTGACTGGAGCAAC ACTCATTTCGGTCTGTACCCTTGGTGGATCGGCTCCATTGCCGAGGCTGTGTTCCTTCTTGGTGCTGAGCGCAAC GCAGACGCGATTATTGGAACTACCTATGCTCCCTTCTTGATGAACTTGGACAGCTACCAATGGTCCCCGACCATC CTCTCGTTCAACTCCGATCCCGACCAGACAGCTCGCTCCACTAGTTGGCACCTGTACACCCTGTTCAACCACAAC CTCATGACAAACACCCTCCCATCCACTTCCTCCGACGACTTCGGTCCTCTGTACTATGCAACAGGTCTGAACAGC AAGACCAACTCGCACATCTTCAAGGCAGCAGTATACAACAGCACATCCGATGTGCCTGTATCACTGACCTTCGAG GGTGTCGGCCGTGGAACCAAGGCAGACTTGACCATCTTGACTGCGCCAGATCCATTTTCGGTGAACGAGGTGGGC GGGACGAATATCGTCAACAGCAAGACTACCCAGATTAAGGCTGGCAAGAAGGGCGAGTTCTCATTCAAGCTACCG AATCTGAGTATTGCTGTGCTCACTACCAGTTAA |
| Transcript | >Pro_DTO377G3_2|g8732.t1 ATGCTGCACAAATATCTTCTTCTGCCGCTTTTGGCGTCATATGGTGCCGCGGTCACTATTTCTGTAGCAAAATCT GGAGGCAATGCTACATCAGGTCTGCAATATGGTGCAATGGAAGAGGAAATCAACCATTGTGGCGAAGGAGGTCTC TATGCTGAATTGATCCGAAACAGAGCATTCCAAGGAAGTCCAAAGTTCCCTTCATCATTGGACGCCTGGTCTGGT GTTGGGGACTCATCGCTGTCCCTAAAGAACCTCACTGACCCACTGTCTACTGCCCTTCCAACTTCAATCAATGTC AAGGGTACTGGCACAACTGGGTTGACTAATGCGGGTTTCTGGGGAATTGACGTCCGTCCTCAGAAGTATACTGGG TCATTCTATGTGAAAGGCTCTTACTCGGGCTCCTTCACGGCTTCTCTCCTCTCGTCCAGCGGCGAAGTTTTGGCC ACTACTAAGATTGCTTCAAAGAGTGTTGCAGATGACTGGGTGCAGCATGATTTTGTTCTTACTCCCAAAGCAAAG GCTTCCGATACCAAGAATACGTTCTCCCTGACCTTCGATGGCTCGAGCGCATCGAATGGCTCACTTGATTTTAAT CTGATCAGCTTATTCCCACCCACATGGAATGATCGCCCCAATGGCATGCGGAAAGACTTGATGCAAGCCATGGCC GATATGGGCCCCAAATTCCTCCGCTTCCCTGGTGGAAATAACCTCGAGGGTGACAGCATCGACGGACGCTGGAAG TGGAACGAAACCATTGGACCACTCACAGACCGACCTGGTCGCGCAACCACTTGGCAATACCAAGAGACCCTTGGA TTAGGCTTGGTTGAGTATATGGAGTGGTGCGACGATCTTGGAATGGAGCCTATCCTGGCGGTTTGGGCTGGACTC GCTCTGAACGGAGAAGTTGTCCCCGAGGCAGATCTCGATTTCTATGTGCAAGATGCCCTCAATGAGATCGAGTTC TTGACTGGCTCTGTTGATACCGAGTACGGCGCTCTGCGTGCCAAGGTTGGACACCCAGAACCCTGGACAATTCGG TATGTCGAGGTTGGAAATGAGGATATGCTGAGTAGTGGTCTGGCATCGTACGAGTCCTACAGGTTCTCGGCCTTC TACGAGGCTATTACGGCCAAGTACCCCGATATCCAGGTCCTTGCATCTACTATAGATATCACGATTCCTGGAAAT GCAGGTGGTGATTACCATTTGTATGATGTCCCGGATAACTTCGTCAGCAAGTTCCACATGTTCGATAGTTATACA TCCGAGCATCCTATTTTGCTTGGTGAGATTGCTGTTACTGAGTCAAATAACGGAGTTGGCATTGACTGGAGCAAC ACTCATTTCGGTCTGTACCCTTGGTGGATCGGCTCCATTGCCGAGGCTGTGTTCCTTCTTGGTGCTGAGCGCAAC GCAGACGCGATTATTGGAACTACCTATGCTCCCTTCTTGATGAACTTGGACAGCTACCAATGGTCCCCGACCATC CTCTCGTTCAACTCCGATCCCGACCAGACAGCTCGCTCCACTAGTTGGCACCTGTACACCCTGTTCAACCACAAC CTCATGACAAACACCCTCCCATCCACTTCCTCCGACGACTTCGGTCCTCTGTACTATGCAACAGGTCTGAACAGC AAGACCAACTCGCACATCTTCAAGGCAGCAGTATACAACAGCACATCCGATGTGCCTGTATCACTGACCTTCGAG GGTGTCGGCCGTGGAACCAAGGCAGACTTGACCATCTTGACTGCGCCAGATCCATTTTCGGTGAACGAGGTGGGC GGGACGAATATCGTCAACAGCAAGACTACCCAGATTAAGGCTGGCAAGAAGGGCGAGTTCTCATTCAAGCTACCG AATCTGAGTATTGCTGTGCTCACTACCAGTTAA |
| Gene | >Pro_DTO377G3_2|g8732.t1 ATGCTGCACAAATATCTTCTTCTGCCGCTTTTGGCGTCATATGGTGCCGCGGTCACTATTTCTGTAGCAAAATCT GGAGGCAATGCTACATCAGGTCTGCAATATGGTGCAATGGAAGAGGTAGGATGAGCTTCGTGTCAATTGTTATCG GATCTAATTCAAGGTTTAGGAAATCAACCATTGTGGCGAAGGAGGTCTCTATGCTGAATTGATCCGAAACAGAGC ATTCCAAGGAAGTCCAAAGTTCCCTTCATCATTGGACGCCTGGTCTGGTGTTGGGGACTCATCGCTGTCCCTAAA GAACCTCACTGACCCACTGTCTACTGCCCTTCCAACTTCAATCAATGTCAAGGGTACTGGCACAACTGGGTTGAC TAATGCGGGTTTCTGGGGAATTGACGTCCGTCCTCAGAAGTATACTGGGTCATTCTATGTGAAAGGCTCTTACTC GGGCTCCTTCACGGCTTCTCTCCTCTCGTCCAGCGGCGAAGTTTTGGCCACTACTAAGATTGCTTCAAAGAGTGT TGCAGATGACTGGGTGCAGCATGATTTTGTTCTTACTCCCAAAGCAAAGGCTTCCGATACCAAGAATACGTTCTC CCTGACCTTCGATGGCTCGGTAAGATTTGGGATAGGGGACTTGCTATGCACCTCAGCTAATTCCATCTAGAGCGC ATCGAATGGCTCACTTGATTTTAATCTGATCAGCTTATTCCCACCCACATGGAATGATCGCCCCAATGGCATGCG GAAAGACTTGATGCAAGCCATGGCCGATATGGGCCCCGTAAGTCAAAATCTTACTATTGCCTCGGAAAAGCGCAA TGATCCGGGATGCTAATAATCTTGATAGAAATTCCTCCGCTTCCCTGGTGGAAATAACCTCGAGGGTGACAGCAT CGACGGACGCTGGAAGTGGAACGAAACCATTGGACCACTCACAGACCGACCTGGTCGCGCAACCACTTGGCAATA CCAAGAGACCCTTGGATTAGGCTTGGTTGAGTATATGGAGTGGTGCGACGATCTTGGAATGGAGCCTAGTAAGTA CATTATTTCGCCATATTTTGCTTACATAGCTGACAAAATATGTCTAGTCCTGGCGGTTTGGGCTGGACTCGCTCT GAACGGAGAAGTTGTCCCCGAGGCAGATCTCGATTTCTATGTGCAAGATGCCCTCAATGAGATCGAGTTCTTGAC TGGCTCTGTTGATACCGAGTACGGCGCTCTGCGTGCCAAGGTTGGACACCCAGAACCCTGGACAATTCGGTATGT CGAGGTTGGAAATGAGGATATGCTGAGTAGTGGTCTGGCATCGTACGAGTCCTACAGGTTCTCGGCCTTCTACGA GGCTATTACGGCCAAGTACCCCGATATCCAGGTCCTTGCATCTACTATAGATATCACGATTCCTGGAAATGCAGG TGGTGATTACCATTTGTATGATGTCCCGGATAACTTCGTCAGCAAGTTCCACATGTTCGATAGTTATACATCCGA GCATCCTATTTTGCTTGGTAAGTCAATAAGTATACCTGCGAGATATGAACTAACACGCATCAAGGTGAGATTGCT GTTACTGAGTCAAATAACGGAGTTGGCATTGACTGGAGCAACACTCATTTCGGTCTGTACCCTTGGTGGATCGGC TCCATTGCCGAGGCTGTGTTCCTTCTTGGTGCTGAGCGCAACGCAGACGCGATTATTGGAACTACCTATGTGAGT TGTGTCAACTTAAGTTTTAGTAGAAGAGAACTGACAAAGCAATAGGCTCCCTTCTTGATGAACTTGGACAGCTAC CAATGGTCCCCGACCATCCTCTCGTTCAACTCCGATCCCGACCAGACAGCTCGCTCCACTAGTTGGCACCTGTAC ACCGTATGTTAAACTCTTATCAGGCCTTCAAAGTAACATCCACTGACATGAGATGCGAAAATAGCTGTTCAACCA CAACCTCATGACAAACACCCTCCCATCCACTTCCTCCGACGACTTCGGTCCTCTGTACTATGCAACAGGTCTGAA CAGCAAGACCAACTCGCACATCTTCAAGGCAGCAGTATACAACAGCACATCCGATGTGCCTGTATCACTGACCTT CGAGGGTGTCGGCCGTGGAACCAAGGCAGACTTGACCATCTTGACTGCGCCAGATCCATTTTCGGTGAACGAGGT GGGCGGGACGAATATCGTCAACAGCAAGACTACCCAGATTAAGGCTGGCAAGAAGGGCGAGTTCTCATTCAAGCT ACCGAATCTGAGTATTGCTGTGCTCACTACCAGTTAA |