© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8721.t1 |
| Gene name | |
| Location | scaffold_36:117333..119756 |
| Strand | + |
| Gene length (bp) | 2423 |
| Transcript length (bp) | 2367 |
| Coding sequence length (bp) | 2367 |
| Protein length (aa) | 789 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03169 | OPT | OPT oligopeptide transporter protein | 1.1E-181 | 90 | 744 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0035673 | oligopeptide transmembrane transporter activity | Yes |
| GO:1904680 | peptide transmembrane transporter activity | No |
| GO:0042887 | amide transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 49 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 91 | 113 | 22 |
| 2 | 167 | 189 | 22 |
| 3 | 199 | 221 | 22 |
| 4 | 276 | 298 | 22 |
| 5 | 303 | 322 | 19 |
| 6 | 335 | 357 | 22 |
| 7 | 415 | 437 | 22 |
| 8 | 467 | 489 | 22 |
| 9 | 493 | 515 | 22 |
| 10 | 645 | 667 | 22 |
| 11 | 682 | 704 | 22 |
| 12 | 724 | 746 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.00 | 0.54 | 3.46 |
| 5d_25C | Five days - 25 degrees Celsius | 3.76 | 1.33 | 6.18 |
| 7d_25C | Seven days - 25 degrees Celsius | 5.70 | 2.33 | 9.07 |
| 10d_25C | Ten days - 25 degrees Celsius | 4.85 | 1.91 | 7.79 |
| 7d_15C | Seven days - 15 degrees Celsius | 7.91 | 3.54 | 12.29 |
| 7d_30C | Seven days - 30 degrees Celsius | 8.37 | 3.86 | 12.89 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.095108 | no |
| 3d_25C | 7d_25C | 0.003625 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.015558 | yes |
| 5d_25C | 7d_25C | 0.247563 | no |
| 5d_25C | 7d_15C | 0.019886 | yes |
| 5d_25C | 7d_30C | 0.010735 | yes |
| 5d_25C | 10d_25C | 0.533990 | no |
| 7d_25C | 7d_15C | 0.349120 | no |
| 7d_25C | 7d_30C | 0.249321 | no |
| 7d_25C | 10d_25C | 0.707064 | no |
| 7d_15C | 7d_30C | 0.905591 | no |
| 7d_15C | 10d_25C | 0.144146 | no |
| 7d_30C | 10d_25C | 0.087906 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8721.t1 MEKDESIAVTTGAMVDETAPDDKLKKLRDLKDHHHWDPNMPEDVVEELDEALHTSDKHTQEVIAQELLENSPYPE VRSAVSNVDEGGSVNTIRAWVIGLLFATIGSALNMLFSMRQPYIVIPSYIAQVVAYPVGKAWEWWMPNYTVRIFG YQTELNPGTFTKKEHTIVVIMANATFGGGAAYATDVLLAQRAFYGQRFGWGFEILMCISTQMLGFGMAGFFTRFL VQPAAMIWPSTLINTSLFTALHDVALPDPSKVAGWRIGKYKLFLYTMIGSFCWYWFPGYLAPFLSIFAWVTWIKP QNVVINQLFGGATGLSLIPMTFDWTQVSGFNFSPLIAPWYAISNTMIGMFLWFWIVTPAIHYSNLFYAQYLPMSD SRSYDNTANVYNVTKILTPEFTFDSVKYSNYSPLFLSTTFMLSYGLSFASIIAVLVQTGLFNGADIWARFRRVGK EEEDVHGRLMNRYATVPIWWYLGVFVAMTAIGFGVVLGYPTHMSWWAFIISLLISAVWFVPIGIVKAATNIDIGL NVITEFIIGYMQPGKPMAMMLFKTYGYISMYQGMYFSQDLKIGHYMKIPPRVTFMAQMVACLWSSLVQIATMNWA LGAIENVCDQAQRNHFTCPNGRVFFNASVIWGVIGPARMFSIGELYSPLMFFFLAGAILPVIIYVGARYFPKSPI KYLSAPIIFGGAGLIPPATPLNYLTWGIVGYVFNKYIRDRWRGWWMHYNYVLSAGLDVGLALCTILIFLTLNLTD TNFPDWWGTNIAADTMDVTDTAIRVPLAEGETFGPTKW* |
| Coding | >Pro_DTO377G3_2|g8721.t1 ATGGAGAAGGACGAGTCTATCGCCGTCACCACCGGCGCGATGGTCGACGAGACTGCGCCTGATGATAAACTCAAG AAGCTGCGTGATCTCAAGGACCACCATCACTGGGATCCTAACATGCCCGAGGATGTCGTTGAGGAACTCGATGAG GCATTACATACATCCGACAAGCATACCCAAGAGGTCATCGCTCAGGAACTCCTCGAGAACTCCCCGTACCCCGAG GTTCGGTCCGCTGTCTCCAACGTCGATGAGGGTGGATCAGTCAACACTATTCGCGCCTGGGTCATTGGTCTTCTA TTTGCGACCATCGGCTCGGCCCTCAACATGCTGTTCTCCATGCGCCAGCCTTACATTGTCATTCCCTCATACATT GCGCAGGTTGTCGCCTACCCCGTGGGAAAGGCATGGGAATGGTGGATGCCCAATTACACCGTCCGTATCTTTGGC TATCAAACCGAACTCAACCCCGGTACTTTCACCAAGAAAGAACATACAATTGTGGTGATCATGGCAAACGCCACT TTCGGTGGTGGCGCCGCCTACGCGACGGATGTCCTCTTGGCTCAGCGTGCCTTTTATGGACAACGTTTCGGCTGG GGCTTCGAGATCCTTATGTGTATCTCGACTCAGATGTTGGGCTTCGGCATGGCCGGCTTCTTCACCCGCTTCCTG GTGCAGCCCGCCGCCATGATCTGGCCCTCGACCCTGATTAACACCTCCCTCTTCACTGCACTACACGATGTCGCC CTGCCGGATCCCAGCAAGGTCGCTGGCTGGAGGATCGGCAAATATAAGCTGTTCCTGTACACTATGATTGGCTCT TTCTGTTGGTACTGGTTCCCAGGATACCTCGCACCATTCCTGAGTATCTTTGCCTGGGTCACCTGGATCAAGCCC CAGAACGTGGTCATCAACCAGCTCTTCGGTGGAGCGACCGGCCTCTCGCTTATCCCAATGACATTTGACTGGACT CAGGTCTCTGGATTCAACTTCAGTCCCCTGATTGCTCCTTGGTATGCCATCTCCAATACCATGATCGGCATGTTT CTCTGGTTCTGGATCGTCACCCCGGCCATTCACTACTCCAATCTCTTCTACGCTCAGTACCTGCCCATGAGTGAC TCCAGAAGTTACGACAACACTGCGAATGTGTACAATGTCACCAAGATTCTTACTCCAGAATTCACATTTGACAGT GTGAAATACTCGAACTATTCCCCTCTCTTCCTGTCGACGACATTCATGCTGTCCTACGGGCTATCCTTTGCCAGT ATTATCGCTGTGCTGGTTCAGACTGGTCTCTTCAACGGTGCGGATATTTGGGCTCGATTCCGTCGCGTCGGAAAG GAGGAGGAAGATGTCCACGGTCGTCTCATGAATCGCTACGCTACAGTTCCCATCTGGTGGTACTTGGGTGTGTTT GTGGCCATGACTGCAATTGGCTTTGGTGTTGTACTGGGCTATCCTACACACATGAGCTGGTGGGCCTTCATCATT TCTCTGCTCATTTCCGCCGTTTGGTTTGTTCCTATTGGCATCGTCAAGGCTGCCACTAACATCGACATCGGCCTC AATGTCATCACCGAGTTCATCATCGGTTACATGCAGCCTGGTAAACCTATGGCCATGATGCTGTTCAAAACTTAC GGTTATATCAGCATGTACCAGGGAATGTACTTTTCACAGGATTTGAAAATCGGTCACTACATGAAGATTCCTCCC CGCGTGACTTTTATGGCCCAGATGGTCGCTTGTCTGTGGTCATCGCTGGTGCAAATCGCCACCATGAACTGGGCA CTGGGCGCAATTGAGAACGTTTGCGACCAGGCACAGCGTAACCACTTCACCTGCCCTAACGGTCGTGTGTTCTTC AATGCCTCCGTTATCTGGGGTGTCATCGGACCGGCCCGCATGTTCTCGATCGGCGAGCTATACTCGCCCTTGATG TTCTTCTTCCTCGCCGGCGCCATCCTCCCCGTCATAATCTACGTCGGCGCCCGTTACTTCCCTAAGAGCCCTATC AAGTATCTCAGTGCGCCTATCATCTTCGGCGGTGCTGGTCTAATTCCCCCCGCTACCCCTCTGAACTATCTCACC TGGGGTATCGTCGGATACGTCTTCAATAAGTATATCCGTGACCGCTGGCGCGGGTGGTGGATGCACTACAACTAC GTCCTGTCCGCTGGCCTGGATGTCGGCCTCGCTCTGTGCACCATTCTCATCTTCTTGACCCTCAACTTGACCGAT ACCAACTTCCCTGACTGGTGGGGAACCAATATTGCCGCCGACACCATGGATGTCACTGATACAGCCATTCGGGTC CCGCTCGCTGAAGGAGAGACCTTTGGTCCCACCAAGTGGTAG |
| Transcript | >Pro_DTO377G3_2|g8721.t1 ATGGAGAAGGACGAGTCTATCGCCGTCACCACCGGCGCGATGGTCGACGAGACTGCGCCTGATGATAAACTCAAG AAGCTGCGTGATCTCAAGGACCACCATCACTGGGATCCTAACATGCCCGAGGATGTCGTTGAGGAACTCGATGAG GCATTACATACATCCGACAAGCATACCCAAGAGGTCATCGCTCAGGAACTCCTCGAGAACTCCCCGTACCCCGAG GTTCGGTCCGCTGTCTCCAACGTCGATGAGGGTGGATCAGTCAACACTATTCGCGCCTGGGTCATTGGTCTTCTA TTTGCGACCATCGGCTCGGCCCTCAACATGCTGTTCTCCATGCGCCAGCCTTACATTGTCATTCCCTCATACATT GCGCAGGTTGTCGCCTACCCCGTGGGAAAGGCATGGGAATGGTGGATGCCCAATTACACCGTCCGTATCTTTGGC TATCAAACCGAACTCAACCCCGGTACTTTCACCAAGAAAGAACATACAATTGTGGTGATCATGGCAAACGCCACT TTCGGTGGTGGCGCCGCCTACGCGACGGATGTCCTCTTGGCTCAGCGTGCCTTTTATGGACAACGTTTCGGCTGG GGCTTCGAGATCCTTATGTGTATCTCGACTCAGATGTTGGGCTTCGGCATGGCCGGCTTCTTCACCCGCTTCCTG GTGCAGCCCGCCGCCATGATCTGGCCCTCGACCCTGATTAACACCTCCCTCTTCACTGCACTACACGATGTCGCC CTGCCGGATCCCAGCAAGGTCGCTGGCTGGAGGATCGGCAAATATAAGCTGTTCCTGTACACTATGATTGGCTCT TTCTGTTGGTACTGGTTCCCAGGATACCTCGCACCATTCCTGAGTATCTTTGCCTGGGTCACCTGGATCAAGCCC CAGAACGTGGTCATCAACCAGCTCTTCGGTGGAGCGACCGGCCTCTCGCTTATCCCAATGACATTTGACTGGACT CAGGTCTCTGGATTCAACTTCAGTCCCCTGATTGCTCCTTGGTATGCCATCTCCAATACCATGATCGGCATGTTT CTCTGGTTCTGGATCGTCACCCCGGCCATTCACTACTCCAATCTCTTCTACGCTCAGTACCTGCCCATGAGTGAC TCCAGAAGTTACGACAACACTGCGAATGTGTACAATGTCACCAAGATTCTTACTCCAGAATTCACATTTGACAGT GTGAAATACTCGAACTATTCCCCTCTCTTCCTGTCGACGACATTCATGCTGTCCTACGGGCTATCCTTTGCCAGT ATTATCGCTGTGCTGGTTCAGACTGGTCTCTTCAACGGTGCGGATATTTGGGCTCGATTCCGTCGCGTCGGAAAG GAGGAGGAAGATGTCCACGGTCGTCTCATGAATCGCTACGCTACAGTTCCCATCTGGTGGTACTTGGGTGTGTTT GTGGCCATGACTGCAATTGGCTTTGGTGTTGTACTGGGCTATCCTACACACATGAGCTGGTGGGCCTTCATCATT TCTCTGCTCATTTCCGCCGTTTGGTTTGTTCCTATTGGCATCGTCAAGGCTGCCACTAACATCGACATCGGCCTC AATGTCATCACCGAGTTCATCATCGGTTACATGCAGCCTGGTAAACCTATGGCCATGATGCTGTTCAAAACTTAC GGTTATATCAGCATGTACCAGGGAATGTACTTTTCACAGGATTTGAAAATCGGTCACTACATGAAGATTCCTCCC CGCGTGACTTTTATGGCCCAGATGGTCGCTTGTCTGTGGTCATCGCTGGTGCAAATCGCCACCATGAACTGGGCA CTGGGCGCAATTGAGAACGTTTGCGACCAGGCACAGCGTAACCACTTCACCTGCCCTAACGGTCGTGTGTTCTTC AATGCCTCCGTTATCTGGGGTGTCATCGGACCGGCCCGCATGTTCTCGATCGGCGAGCTATACTCGCCCTTGATG TTCTTCTTCCTCGCCGGCGCCATCCTCCCCGTCATAATCTACGTCGGCGCCCGTTACTTCCCTAAGAGCCCTATC AAGTATCTCAGTGCGCCTATCATCTTCGGCGGTGCTGGTCTAATTCCCCCCGCTACCCCTCTGAACTATCTCACC TGGGGTATCGTCGGATACGTCTTCAATAAGTATATCCGTGACCGCTGGCGCGGGTGGTGGATGCACTACAACTAC GTCCTGTCCGCTGGCCTGGATGTCGGCCTCGCTCTGTGCACCATTCTCATCTTCTTGACCCTCAACTTGACCGAT ACCAACTTCCCTGACTGGTGGGGAACCAATATTGCCGCCGACACCATGGATGTCACTGATACAGCCATTCGGGTC CCGCTCGCTGAAGGAGAGACCTTTGGTCCCACCAAGTGGTAG |
| Gene | >Pro_DTO377G3_2|g8721.t1 ATGGAGAAGGACGAGTCTATCGCCGTCACCACCGGCGCGATGGTCGACGAGACTGCGCCTGATGATAAACTCAAG AAGCTGCGTGATCTCAAGGACCACCATCACTGGGATCCTAACATGCCCGAGGATGTCGTTGAGGAACTCGATGAG GCATTACATACATCCGACAAGCATACCCAAGAGGTCATCGCTCAGGAACTCCTCGAGAACTCCCCGTACCCCGAG GTTCGGTCCGCTGTCTCCAACGTCGATGAGGGTGGATCAGTCAACACTATTCGCGCCTGGGTCATTGGTCTTCTA TTTGCGACCATCGGCTCGGCCCTCAACATGCTGTTCTCCATGCGCCAGCCTTACATTGTCATTCCCTCATACATT GCGCAGGTTGTCGCCTACCCCGTGGGAAAGGCATGGGAATGGTGGATGCCCAATTACACCGTCCGTATCTTTGGC TATCAAACCGAACTCAACCCCGGTACTTTCACCAAGAAAGAACATACAATTGTGGTGATCATGGCAAACGCCACT TTCGGTGGTGGCGCCGCCTACGCGACGGATGTCCTCTTGGCTCAGCGTGCCTTTTATGGACAACGTTTCGGCTGG GGCTTCGAGATCCTTATGTGTATCTCGACTCAGATGTTGGGCTTCGGCATGGCCGGCTTCTTCACCCGCTTCCTG GTGCAGCCCGCCGCCATGATCTGGCCCTCGACCCTGATTAACACCTCCCTCTTCACTGCACTACACGATGTCGCC CTGCCGGATCCCAGCAAGGTCGCTGGCTGGAGGATCGGCAAATATAAGCTGTTCCTGTACACTATGATTGGCTCT TTCTGTTGGTACTGGTTCCCAGGATACCTCGCACCATTCCTGAGTATCTTTGCCTGGGTCACCTGGATCAAGCCC CAGAACGTGGTCATCAACCAGCTCTTCGGTGGAGCGACCGGCCTCTCGCTTATCCCAATGACATTTGACTGGACT CAGGTCTCTGGATTCAACTTCAGTCCCCTGATTGCTCCTTGGTATGCCATCTCCAATACCATGATCGGCATGTTT CTCTGGTTCTGGATCGTCACCCCGGCCATTCACTACTCCAATCTCTTCTACGCTCAGTACCTGCCCATGAGTGAC TCCAGAAGTTACGACAACACTGCGAATGTGTACAATGTCACCAAGATTCTTACTCCAGAATTCACATTTGACAGT GTGAAATACTCGAACTATTCCCCTCTCTTCCTGTCGACGACATTCATGCTGTCCTACGGGCTATCCTTTGCCAGT ATTATCGCTGTGCTGGTTCAGACTGGTCTCTTCAACGGTGCGGATATTTGGGCTCGATTCCGTCGCGTCGGAAAG GAGGAGGAAGATGTCCACGGTCGTCTCATGAATCGCTACGCTACAGTTCCCATCTGGTGGTACTTGGGTGTGTTT GTGGCCATGACTGCAATTGGCTTTGGTGTTGTACTGGGCTATCCTACACACATGAGCTGGTGGGCCTTCATCATT TCTCTGCTCATTTCCGCCGTTTGGTTTGTTCCTATTGGCATCGTCAAGGCTGCCACTAACATCGACATCGGCCTC AATGTCATCACCGAGTTCATCATCGGTTACATGCAGCCTGGTAAACCTATGGCCATGATGCTGTTCAAAACTTAC GGTTATATCAGCATGTACCAGGGAATGTACTTTTCACAGGATTTGAAAATCGGTAAGTCCCGTCGCTGGCTATCT AGATACATTATACCAACAGTCCTCTTCCATTAGGTCACTACATGAAGATTCCTCCCCGCGTGACTTTTATGGCCC AGATGGTCGCTTGTCTGTGGTCATCGCTGGTGCAAATCGCCACCATGAACTGGGCACTGGGCGCAATTGAGAACG TTTGCGACCAGGCACAGCGTAACCACTTCACCTGCCCTAACGGTCGTGTGTTCTTCAATGCCTCCGTTATCTGGG GTGTCATCGGACCGGCCCGCATGTTCTCGATCGGCGAGCTATACTCGCCCTTGATGTTCTTCTTCCTCGCCGGCG CCATCCTCCCCGTCATAATCTACGTCGGCGCCCGTTACTTCCCTAAGAGCCCTATCAAGTATCTCAGTGCGCCTA TCATCTTCGGCGGTGCTGGTCTAATTCCCCCCGCTACCCCTCTGAACTATCTCACCTGGGGTATCGTCGGATACG TCTTCAATAAGTATATCCGTGACCGCTGGCGCGGGTGGTGGATGCACTACAACTACGTCCTGTCCGCTGGCCTGG ATGTCGGCCTCGCTCTGTGCACCATTCTCATCTTCTTGACCCTCAACTTGACCGATACCAACTTCCCTGACTGGT GGGGAACCAATATTGCCGCCGACACCATGGATGTCACTGATACAGCCATTCGGGTCCCGCTCGCTGAAGGAGAGA CCTTTGGTCCCACCAAGTGGTAG |