© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8710.t1 |
| Gene name | |
| Location | scaffold_36:92687..94748 |
| Strand | - |
| Gene length (bp) | 2061 |
| Transcript length (bp) | 1863 |
| Coding sequence length (bp) | 1863 |
| Protein length (aa) | 621 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11700 | ATG22 | Vacuole effluxer Atg22 like | 1.7E-166 | 64 | 592 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 71 | 93 | 22 |
| 2 | 156 | 175 | 19 |
| 3 | 179 | 201 | 22 |
| 4 | 291 | 313 | 22 |
| 5 | 323 | 340 | 17 |
| 6 | 397 | 419 | 22 |
| 7 | 429 | 451 | 22 |
| 8 | 463 | 485 | 22 |
| 9 | 500 | 522 | 22 |
| 10 | 534 | 556 | 22 |
| 11 | 566 | 585 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 91.71 | 55.87 | 127.55 |
| 5d_25C | Five days - 25 degrees Celsius | 121.57 | 73.40 | 169.75 |
| 7d_25C | Seven days - 25 degrees Celsius | 110.56 | 65.96 | 155.16 |
| 10d_25C | Ten days - 25 degrees Celsius | 113.73 | 68.91 | 158.55 |
| 7d_15C | Seven days - 15 degrees Celsius | 162.21 | 92.89 | 231.53 |
| 7d_30C | Seven days - 30 degrees Celsius | 93.69 | 55.21 | 132.18 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.222094 | no |
| 3d_25C | 7d_25C | 0.461507 | no |
| 3d_25C | 7d_15C | 0.005626 | yes |
| 3d_25C | 7d_30C | 0.951535 | no |
| 3d_25C | 10d_25C | 0.365727 | no |
| 5d_25C | 7d_25C | 0.753683 | no |
| 5d_25C | 7d_15C | 0.227321 | no |
| 5d_25C | 7d_30C | 0.278288 | no |
| 5d_25C | 10d_25C | 0.832191 | no |
| 7d_25C | 7d_15C | 0.090191 | no |
| 7d_25C | 7d_30C | 0.535998 | no |
| 7d_25C | 10d_25C | 0.935970 | no |
| 7d_15C | 7d_30C | 0.010083 | yes |
| 7d_15C | 10d_25C | 0.107013 | no |
| 7d_30C | 10d_25C | 0.433703 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8710.t1 MLLVGALPPASARTWACKFVDSWGRIYTTFSMLSYISAAFRPPSPEEGVQQRPPRYAGEDTTPTSRREILGWYSY GIAAEVFAVCGVGSFLPLTLEQLARERGTLQVSRLPCVGPSTGNSTNSAEHGQCVVPIFGAEVNTASFAIALADY ENNRKILLMVFGFAGALASMLFIFIAPPIFIIGSILVVIGVTCLGSSFVVLNSYLPVLVANDPSLQEGKADDSAE MSSFDRDGGNSEWNAWGSDDADNDSLDGLQPQEQPRSSLEGGLGAKAPPSSSPELQLSTKISSTGIGLGYCAAVF VQIISIILLITLSKTSLVKVSGTLPMRFVLLLVGIWWGGFTLVTRNLLKTRPGPPLDSVATKGTARWRAWLRLIG FAWKSLWETVKIVIKLREVLMFLVAWFLISDAMATVSATAILFARTELKLSTPLIGLLSITATVSGMTGAFLWPH VSRYFGLRPNQTIILCIGMFEMIPLYGLLAYIPFIKKWGVFGLQQPWEIFPLAIVHGVVSGGLASYCRSFFGLMI PPGSEAAFYALYAATDKGSSFIGPAIVGVLVDATGQIRSGFFFMALLILLPIPLVWMVNADKGRREGLAMAETLG KSHGGPAEYAQEAEGLLARE* |
| Coding | >Pro_DTO377G3_2|g8710.t1 ATGTTGCTCGTTGGGGCTCTTCCGCCCGCATCCGCGCGTACCTGGGCTTGTAAATTTGTGGATTCCTGGGGGAGA ATTTACACAACCTTCTCCATGCTATCCTATATATCTGCTGCCTTTCGGCCCCCGTCGCCAGAGGAAGGCGTACAG CAGCGACCACCACGGTATGCCGGTGAAGATACCACCCCAACGAGCCGCCGGGAGATCCTAGGATGGTACTCGTAC GGGATTGCGGCGGAGGTGTTCGCGGTCTGTGGCGTAGGATCTTTCCTACCGCTCACCTTGGAACAATTAGCCCGC GAGCGCGGCACCCTGCAAGTGAGCCGTCTTCCATGCGTCGGACCATCCACAGGGAACAGCACAAATAGTGCTGAG CATGGCCAATGTGTGGTGCCGATCTTTGGCGCCGAGGTCAATACAGCTAGCTTCGCCATCGCGCTGGCGGATTAC GAGAACAACCGCAAGATATTACTTATGGTATTCGGATTCGCCGGTGCGCTCGCCAGCATGTTGTTCATATTCATT GCGCCGCCTATCTTCATTATCGGATCGATATTGGTCGTCATCGGTGTGACCTGCCTCGGTTCATCCTTTGTTGTG CTGAACTCTTATCTCCCTGTGCTTGTCGCCAACGACCCATCTCTGCAAGAGGGAAAGGCGGATGACAGCGCGGAA ATGTCGAGCTTCGATCGAGACGGAGGTAACTCGGAATGGAACGCCTGGGGCAGCGATGATGCCGACAACGATAGT TTAGACGGACTTCAGCCACAAGAGCAGCCACGGAGCTCACTAGAAGGTGGACTAGGGGCCAAGGCCCCGCCGTCG TCCTCCCCGGAGCTGCAGCTTTCCACCAAAATCTCCTCCACAGGCATTGGTCTTGGATATTGTGCGGCGGTTTTT GTGCAAATCATCAGTATCATCCTGCTGATCACATTATCCAAGACCTCCCTTGTGAAAGTGTCTGGCACTCTTCCC ATGCGCTTCGTATTGCTCCTGGTCGGCATCTGGTGGGGCGGGTTCACCTTGGTCACTCGTAATTTGCTCAAGACA CGACCGGGGCCTCCCTTGGATTCAGTCGCCACCAAAGGCACAGCAAGATGGCGAGCCTGGCTACGACTGATCGGT TTTGCCTGGAAATCACTATGGGAGACCGTGAAAATAGTCATCAAACTGCGCGAAGTCCTCATGTTCCTCGTAGCA TGGTTCCTGATCTCCGATGCAATGGCCACTGTCTCTGCAACGGCGATCCTCTTCGCGCGGACGGAACTCAAACTG AGCACACCGCTGATCGGACTTCTCTCCATCACTGCGACGGTGTCCGGCATGACGGGCGCATTCCTATGGCCACAT GTATCTCGGTACTTCGGCCTACGGCCGAATCAAACCATCATCCTATGCATTGGCATGTTTGAGATGATACCACTC TATGGGTTGCTTGCTTACATCCCCTTCATAAAAAAATGGGGTGTGTTCGGGCTACAACAGCCGTGGGAGATATTC CCGCTGGCCATCGTCCACGGAGTCGTGTCGGGAGGACTGGCATCATACTGCCGATCGTTCTTCGGACTCATGATT CCACCCGGTAGCGAGGCTGCGTTCTACGCTCTTTACGCTGCTACGGACAAGGGCAGCTCATTCATTGGGCCGGCT ATTGTGGGCGTTCTTGTTGATGCGACCGGCCAAATCCGAAGTGGATTTTTCTTCATGGCGCTTCTGATCCTTCTG CCTATCCCCCTTGTGTGGATGGTTAATGCGGACAAGGGTCGGCGTGAAGGTTTGGCTATGGCTGAAACCCTGGGC AAGTCACATGGTGGGCCCGCCGAGTACGCCCAGGAAGCCGAAGGGCTTCTTGCTCGTGAGTAG |
| Transcript | >Pro_DTO377G3_2|g8710.t1 ATGTTGCTCGTTGGGGCTCTTCCGCCCGCATCCGCGCGTACCTGGGCTTGTAAATTTGTGGATTCCTGGGGGAGA ATTTACACAACCTTCTCCATGCTATCCTATATATCTGCTGCCTTTCGGCCCCCGTCGCCAGAGGAAGGCGTACAG CAGCGACCACCACGGTATGCCGGTGAAGATACCACCCCAACGAGCCGCCGGGAGATCCTAGGATGGTACTCGTAC GGGATTGCGGCGGAGGTGTTCGCGGTCTGTGGCGTAGGATCTTTCCTACCGCTCACCTTGGAACAATTAGCCCGC GAGCGCGGCACCCTGCAAGTGAGCCGTCTTCCATGCGTCGGACCATCCACAGGGAACAGCACAAATAGTGCTGAG CATGGCCAATGTGTGGTGCCGATCTTTGGCGCCGAGGTCAATACAGCTAGCTTCGCCATCGCGCTGGCGGATTAC GAGAACAACCGCAAGATATTACTTATGGTATTCGGATTCGCCGGTGCGCTCGCCAGCATGTTGTTCATATTCATT GCGCCGCCTATCTTCATTATCGGATCGATATTGGTCGTCATCGGTGTGACCTGCCTCGGTTCATCCTTTGTTGTG CTGAACTCTTATCTCCCTGTGCTTGTCGCCAACGACCCATCTCTGCAAGAGGGAAAGGCGGATGACAGCGCGGAA ATGTCGAGCTTCGATCGAGACGGAGGTAACTCGGAATGGAACGCCTGGGGCAGCGATGATGCCGACAACGATAGT TTAGACGGACTTCAGCCACAAGAGCAGCCACGGAGCTCACTAGAAGGTGGACTAGGGGCCAAGGCCCCGCCGTCG TCCTCCCCGGAGCTGCAGCTTTCCACCAAAATCTCCTCCACAGGCATTGGTCTTGGATATTGTGCGGCGGTTTTT GTGCAAATCATCAGTATCATCCTGCTGATCACATTATCCAAGACCTCCCTTGTGAAAGTGTCTGGCACTCTTCCC ATGCGCTTCGTATTGCTCCTGGTCGGCATCTGGTGGGGCGGGTTCACCTTGGTCACTCGTAATTTGCTCAAGACA CGACCGGGGCCTCCCTTGGATTCAGTCGCCACCAAAGGCACAGCAAGATGGCGAGCCTGGCTACGACTGATCGGT TTTGCCTGGAAATCACTATGGGAGACCGTGAAAATAGTCATCAAACTGCGCGAAGTCCTCATGTTCCTCGTAGCA TGGTTCCTGATCTCCGATGCAATGGCCACTGTCTCTGCAACGGCGATCCTCTTCGCGCGGACGGAACTCAAACTG AGCACACCGCTGATCGGACTTCTCTCCATCACTGCGACGGTGTCCGGCATGACGGGCGCATTCCTATGGCCACAT GTATCTCGGTACTTCGGCCTACGGCCGAATCAAACCATCATCCTATGCATTGGCATGTTTGAGATGATACCACTC TATGGGTTGCTTGCTTACATCCCCTTCATAAAAAAATGGGGTGTGTTCGGGCTACAACAGCCGTGGGAGATATTC CCGCTGGCCATCGTCCACGGAGTCGTGTCGGGAGGACTGGCATCATACTGCCGATCGTTCTTCGGACTCATGATT CCACCCGGTAGCGAGGCTGCGTTCTACGCTCTTTACGCTGCTACGGACAAGGGCAGCTCATTCATTGGGCCGGCT ATTGTGGGCGTTCTTGTTGATGCGACCGGCCAAATCCGAAGTGGATTTTTCTTCATGGCGCTTCTGATCCTTCTG CCTATCCCCCTTGTGTGGATGGTTAATGCGGACAAGGGTCGGCGTGAAGGTTTGGCTATGGCTGAAACCCTGGGC AAGTCACATGGTGGGCCCGCCGAGTACGCCCAGGAAGCCGAAGGGCTTCTTGCTCGTGAGTAG |
| Gene | >Pro_DTO377G3_2|g8710.t1 ATGTTGCTCGTTGGGGCTCTTCCGCCCGCATCCGCGCGTACCTGGGCTTGTAAATTTGTGGATTCCTGGGGGAGA ATTTACACAACCTTCTCCATGCTATCCTATATATCTGCTGCCTTTCGGCCCCCGTCGCCAGAGGAAGGCGTACAG CAGCGACCACCACGGTATGCCGGTGAAGATACCACCCCAACGAGCCGCCGGGAGATCCTAGGATGGTACTCGTAC GGGATTGCGGCGGAGGTGTTCGCGGTCTGTGGCGTAGGTTCGTGAAGACATATCTGCAAACCTAAAATAATCAAT TACTTATCGATCGCCACCAGGATCTTTCCTACCGCTCACCTTGGAACAATTAGCCCGCGAGCGCGGCACCCTGCA AGTGAGCCGTCTTCCATGCGTCGGACCATCCACAGGGAACAGCACAAATAGTGCTGAGCATGGCCAATGTGTGGT GCCGATCTTTGGCGCCGAGGTCAATACAGCTAGCTTCGCCATGTACACCTTCTCGCTAGCGGTACTCATACAGGC GCTGACACTGATATCGTTCAGCGCGCTGGCGGATTACGGTATGGTTGCAGAACGCCGGACTGAGAATGTTTGGTG CGAAAGAGGGACATGAGTTAACGTCAAATTTGTCCAATTGGATGTATAGAGAACAACCGCAAGATATTACTTATG GTATTCGGATTCGCCGGTGCGCTCGCCAGCATGTTGTTCATATTCATTGCGCCGCCTATCTTCATTATCGGATCG ATATTGGTCGTCATCGGTGTGACCTGCCTCGGTTCATCCTTTGTTGTGCTGAACTCTTATCTCCCTGTGCTTGTC GCCAACGACCCATCTCTGCAAGAGGGAAAGGCGGATGACAGCGCGGAAATGTCGAGCTTCGATCGAGACGGAGGT AACTCGGAATGGAACGCCTGGGGCAGCGATGATGCCGACAACGATAGTTTAGACGGACTTCAGCCACAAGAGCAG CCACGGAGCTCACTAGAAGGTGGACTAGGGGCCAAGGCCCCGCCGTCGTCCTCCCCGGAGCTGCAGCTTTCCACC AAAATCTCCTCCACAGGCATTGGTCTTGGATATTGTGCGGCGGTTTTTGTGCAAATCATCAGTATCATCCTGCTG ATCACATTATCCAAGACCTCCCTTGTGAAAGTGTCTGGCACTCTTCCCATGCGCTTCGTATTGCTCCTGGTCGGC ATCTGGTGGGGCGGGTTCACCTTGGTCACTCGTAATTTGCTCAAGACACGACCGGGGCCTCCCTTGGATTCAGTC GCCACCAAAGGCACAGCAAGATGGCGAGCCTGGCTACGACTGATCGGTTTTGCCTGGAAATCACTATGGGAGACC GTGAAAATAGTCATCAAACTGCGCGAAGTCCTCATGTTCCTCGTAGCATGGTTCCTGATCTCCGATGCAATGGCC ACTGTCTCTGCAACGGCGATCCTCTTCGCGCGGACGGAACTCAAACTGAGCACACCGCTGATCGGACTTCTCTCC ATCACTGCGACGGTGTCCGGCATGACGGGCGCATTCCTATGGCCACATGTATCTCGGTACTTCGGCCTACGGCCG AATCAAACCATCATCCTATGCATTGGCATGTTTGAGATGATACCACTCTATGGGTTGCTTGCTTACATCCCCTTC ATAAAAAAATGGGGTGTGTTCGGGCTACAACAGCCGTGGGAGATATTCCCGCTGGCCATCGTCCACGGAGTCGTG TCGGGAGGACTGGCATCATACTGCCGATCGTTCTTCGGACTCATGATTCCACCCGGTAGCGAGGCTGCGTTCTAC GCTCTTTACGCTGCTACGGACAAGGGCAGCTCATTCATTGGGCCGGCTATTGTGGGCGTTCTTGTTGATGCGACC GGCCAAATCCGAAGTGGATTTTTCTTCATGGCGCTTCTGATCCTTCTGCCTATCCCCCTTGTGTGGATGGTTAAT GCGGACAAGGGTCGGCGTGAAGGTTTGGCTATGGCTGAAACCCTGGGCAAGTCACATGGTGGGCCCGCCGAGTAC GCCCAGGAAGCCGAAGGGCTTCTTGCTCGTGAGTAG |