© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g8699.t1 |
| Gene name | |
| Location | scaffold_36:62316..64425 |
| Strand | + |
| Gene length (bp) | 2109 |
| Transcript length (bp) | 1641 |
| Coding sequence length (bp) | 1641 |
| Protein length (aa) | 547 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 1.9E-78 | 59 | 494 |
| PF00324 | AA_permease | Amino acid permease | 8.1E-22 | 63 | 509 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 56 | 78 | 22 |
| 2 | 90 | 112 | 22 |
| 3 | 143 | 165 | 22 |
| 4 | 178 | 196 | 18 |
| 5 | 206 | 228 | 22 |
| 6 | 289 | 311 | 22 |
| 7 | 337 | 359 | 22 |
| 8 | 392 | 409 | 17 |
| 9 | 419 | 438 | 19 |
| 10 | 451 | 473 | 22 |
| 11 | 488 | 510 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8699.t1 MGLPSPVREYTESVPQYETSDSDSLQYTTEVGGNTPKATYQEASGAPVEVNSPLGYSVGWVTVVFLNLSKMIGTG VFSTPSTVLKGAGSVGLTLFYWVIGYLMASSSLSVYMEFASSFPSRSGSEVVYLEQAYPRPKYFFPTVFAMQTVL FSFSSSNAVVLAQYLFKLANSDFTPWKLKGVAVACYTVAVLVLAFHTRWSLRLANAIGLVKLLTLVFIAITGLVV LGGHTSVKDPKANFRSAFEGSNAATAYGATNALTKVWFSFAGYENAFNVVNEVKNPTKTLKWSAPLSLGVTAILY VLANIAYFSAASKEEILESKVVAAGVFFEKVFGTGGAASALNFLICVSAFGNLLAVLLGQSRMLRECGRQGVLPF TSFWTSTRPFGTPLGPYFVKWAFTVLMILAPPAGDAFNFVVDLGVYATTIFGLLLTIGLVIIRARRARLNLPKPE YNAWHVSVAFAILSNLYMVVMPWYPPSTGANGGDVSFWYATYCAVALGIVGLCGVYYYVWIKLLPRIQGFKWEQT VLKLDNGALAHRLVRVPKKDT* |
| Coding | >Pro_DTO377G3_2|g8699.t1 ATGGGTCTTCCATCTCCCGTACGGGAATATACCGAGTCGGTCCCTCAATATGAGACCAGCGACAGTGATAGCCTA CAGTATACCACCGAGGTCGGTGGGAACACCCCCAAGGCCACATACCAGGAGGCCTCGGGAGCGCCCGTTGAGGTT AATTCCCCGCTGGGGTATTCGGTCGGTTGGGTTACAGTGGTTTTCCTGAATTTGAGTAAGATGATCGGAACGGGA GTCTTCTCAACGCCGTCGACCGTCCTCAAAGGCGCCGGCTCGGTTGGTCTCACGTTGTTTTATTGGGTTATTGGG TATTTGATGGCCTCTAGCTCGCTATCGGTCTACATGGAATTCGCATCGTCTTTCCCCAGTCGGTCCGGCTCGGAG GTTGTCTACTTGGAACAAGCGTATCCCCGACCCAAGTACTTTTTCCCTACTGTGTTTGCGATGCAGACGGTGCTT TTCTCGTTTAGCAGCAGCAATGCCGTTGTACTGGCCCAGTATCTCTTCAAACTTGCGAATTCGGACTTCACCCCA TGGAAATTGAAGGGAGTCGCTGTGGCTTGCTATACTGTTGCAGTACTGGTTCTGGCATTTCACACCAGATGGTCT TTGCGACTGGCAAATGCAATCGGGCTAGTCAAACTGCTGACATTGGTATTCATTGCGATAACTGGCTTGGTGGTT CTCGGAGGTCATACCTCAGTGAAAGATCCAAAAGCAAATTTTAGGTCTGCCTTTGAGGGCAGTAATGCCGCGACA GCCTACGGAGCAACCAATGCATTGACCAAGGTCTGGTTCTCTTTTGCAGGCTATGAGAATGCGTTCAATGTCGTC AATGAAGTCAAGAATCCTACCAAAACCTTGAAGTGGAGTGCGCCGCTCTCGCTGGGGGTGACGGCAATTCTGTAC GTGCTGGCCAACATTGCCTACTTTAGTGCTGCAAGCAAGGAAGAAATTCTAGAATCGAAGGTCGTCGCGGCTGGT GTCTTTTTCGAGAAGGTATTCGGAACTGGTGGTGCGGCATCCGCTTTGAATTTCCTTATCTGTGTGAGCGCTTTT GGAAACCTGCTTGCCGTGCTTCTTGGACAGTCTCGCATGCTGAGGGAGTGTGGAAGACAAGGTGTTTTGCCATTC ACTTCTTTTTGGACGTCGACGAGACCGTTTGGAACACCGCTCGGTCCATACTTTGTGAAATGGGCATTCACCGTG TTGATGATCCTAGCACCGCCTGCTGGTGATGCCTTCAATTTCGTGGTGGATCTCGGAGTCTACGCCACGACAATC TTTGGTCTGCTACTCACAATAGGCCTGGTGATCATTCGAGCTCGTCGTGCACGCCTCAACCTGCCAAAACCTGAA TACAACGCCTGGCACGTTTCAGTGGCATTTGCAATTCTTTCGAATCTGTACATGGTCGTAATGCCATGGTACCCG CCCAGTACTGGGGCGAATGGAGGCGATGTGAGCTTCTGGTATGCAACATATTGTGCGGTTGCTCTTGGAATTGTC GGTCTGTGTGGAGTCTACTATTATGTCTGGATCAAGCTTCTGCCTCGAATCCAGGGATTCAAGTGGGAGCAAACG GTTCTCAAACTGGATAATGGTGCCCTGGCGCATCGGCTTGTCAGGGTGCCCAAGAAGGATACCTGA |
| Transcript | >Pro_DTO377G3_2|g8699.t1 ATGGGTCTTCCATCTCCCGTACGGGAATATACCGAGTCGGTCCCTCAATATGAGACCAGCGACAGTGATAGCCTA CAGTATACCACCGAGGTCGGTGGGAACACCCCCAAGGCCACATACCAGGAGGCCTCGGGAGCGCCCGTTGAGGTT AATTCCCCGCTGGGGTATTCGGTCGGTTGGGTTACAGTGGTTTTCCTGAATTTGAGTAAGATGATCGGAACGGGA GTCTTCTCAACGCCGTCGACCGTCCTCAAAGGCGCCGGCTCGGTTGGTCTCACGTTGTTTTATTGGGTTATTGGG TATTTGATGGCCTCTAGCTCGCTATCGGTCTACATGGAATTCGCATCGTCTTTCCCCAGTCGGTCCGGCTCGGAG GTTGTCTACTTGGAACAAGCGTATCCCCGACCCAAGTACTTTTTCCCTACTGTGTTTGCGATGCAGACGGTGCTT TTCTCGTTTAGCAGCAGCAATGCCGTTGTACTGGCCCAGTATCTCTTCAAACTTGCGAATTCGGACTTCACCCCA TGGAAATTGAAGGGAGTCGCTGTGGCTTGCTATACTGTTGCAGTACTGGTTCTGGCATTTCACACCAGATGGTCT TTGCGACTGGCAAATGCAATCGGGCTAGTCAAACTGCTGACATTGGTATTCATTGCGATAACTGGCTTGGTGGTT CTCGGAGGTCATACCTCAGTGAAAGATCCAAAAGCAAATTTTAGGTCTGCCTTTGAGGGCAGTAATGCCGCGACA GCCTACGGAGCAACCAATGCATTGACCAAGGTCTGGTTCTCTTTTGCAGGCTATGAGAATGCGTTCAATGTCGTC AATGAAGTCAAGAATCCTACCAAAACCTTGAAGTGGAGTGCGCCGCTCTCGCTGGGGGTGACGGCAATTCTGTAC GTGCTGGCCAACATTGCCTACTTTAGTGCTGCAAGCAAGGAAGAAATTCTAGAATCGAAGGTCGTCGCGGCTGGT GTCTTTTTCGAGAAGGTATTCGGAACTGGTGGTGCGGCATCCGCTTTGAATTTCCTTATCTGTGTGAGCGCTTTT GGAAACCTGCTTGCCGTGCTTCTTGGACAGTCTCGCATGCTGAGGGAGTGTGGAAGACAAGGTGTTTTGCCATTC ACTTCTTTTTGGACGTCGACGAGACCGTTTGGAACACCGCTCGGTCCATACTTTGTGAAATGGGCATTCACCGTG TTGATGATCCTAGCACCGCCTGCTGGTGATGCCTTCAATTTCGTGGTGGATCTCGGAGTCTACGCCACGACAATC TTTGGTCTGCTACTCACAATAGGCCTGGTGATCATTCGAGCTCGTCGTGCACGCCTCAACCTGCCAAAACCTGAA TACAACGCCTGGCACGTTTCAGTGGCATTTGCAATTCTTTCGAATCTGTACATGGTCGTAATGCCATGGTACCCG CCCAGTACTGGGGCGAATGGAGGCGATGTGAGCTTCTGGTATGCAACATATTGTGCGGTTGCTCTTGGAATTGTC GGTCTGTGTGGAGTCTACTATTATGTCTGGATCAAGCTTCTGCCTCGAATCCAGGGATTCAAGTGGGAGCAAACG GTTCTCAAACTGGATAATGGTGCCCTGGCGCATCGGCTTGTCAGGGTGCCCAAGAAGGATACCTGA |
| Gene | >Pro_DTO377G3_2|g8699.t1 ATGGGTCTTCCATCTCCCGTACGGGAATATACCGAGTCGGTCCCTCAATATGAGACCAGCGACAGTGATAGCCTA CAGTATACCACCGAGGTCGGTGGGAACACCCCCAAGGCCACATACCAGGAGGCCTCGGGAGCGCCCGTTGAGGTT AATTCCCCGCTGGGGTATTCGGTCGGTTGGGTTACAGTGGTTTTCCTGAATTTGAGTAAGATGATCGGAACGGGA GTCTTCTCAACGCGTGCGTACAACCCAACTTTCTCTGGATTATTTGATATACTCACATAGAATAGCGTCGACCGT CCTCAAAGGCGCCGGCTCGGTTGGTCTCACGTTGTTTTATTGGGTTATTGGGTATTTGATGGCCTCTAGCTCGCT ATCGGTCTACATGGAATTCGCATCGTCTTTCCCCAGTCGGTCCGGCTCGGAGGTTGTCTACTTGGAACAAGCGTA TCCCCGACCCAAGTACTTTTTCCCTACTGTGTTTGCGATGCAGACGGTGCTTTTCTCGTTTAGCAGCAGCAATGC CGTTGGTATGATTACATCGCGGGTGAATGGTGGAGTGACGTGTACTGACTTTGTCTAGTACTGGCCCAGTATCTC TTCAAACTTGCGAATTCGGACTTCACCCCATGGAAATTGAAGGGAGTCGCTGTGGCTTGCTATACTGTTGCAGTA CTGGGTGAGTGGTACTCCTTTTATCTGTATCACATGTGCTGATGAAGTCGCCATAGTTCTGGCATTTCACACCAG ATGGTCTTTGCGACTGGCAAATGCAATCGGGCTAGTCAAACTGCTGACATTGGTATTGTAAGTGTTGATCCACAA TATACTCAACTCAACCGGTAAAGCTAACTGGCACTTAGCATTGCGATAACTGGCTTGGTGGTTCTCGGAGGTCAT ACCTCAGTGAAAGATCCAAAAGCAAATTTTAGGTCTGCCTTTGAGGGCAGTAATGCCGCGACAGCCTACGGAGCA ACCAATGCATTGACCAAGGTCTGGTTCTCTTTTGCAGGCTATGAGAATGCGTTCAATGTCGTCAATGAAGTCAAG GTATGTACTTCACATGATCATGACCACTTGTTTGCTAACAAGCACTAGAATCCTACCAAAACCTTGAAGTGGAGT GCGCCGCTCTCGCTGGGGGTGACGGCAATTCTGTACGTGCTGGCCAACATTGCCTACTTTAGTGCTGCAAGCAAG GAAGAAATTCTAGAATCGAAGGTCGTCGCGGCTGGTGTCTTTTTCGAGAAGGTATTCGGAACTGGTGGTGCGGCA TCCGCTTTGAATTTCCTTATCTGTGTGAGCGCTTTTGGAAACCTGCTTGCCGTGCTTCTTGGACAGTCTCGCATG CTGAGGGAGTGTGGAAGGTCAGTGATGAAACAGAATTTACTTTTGGAAGGGAACCTAATGAGTTGTTTGGATATA GACAAGGTGTTTTGCCATTCACTTCTTTTTGGACGTCGACGAGACCGTTTGGAACACCGCTCGGTCCATACTTTG TGAAATGGGCATTCACCGTGTTGATGATCCTAGCACCGCCTGCTGGTGATGCCTTCAATTTCGGTACGCCCTTTT CTATTATCTGACCTTCTAGTTGATCATTTCTCCAGAAATTGAAAGACAGTTTGCTAATTTTGGGGAATAGTGGTG GATCTCGGAGTCTACGCCACGACAATCTTTGGTCTGCTACTCACAATAGGCCTGGTGATCATTCGAGCTCGTCGT GCACGCCTCAACCTGCCAAAACCTGAATACAACGCCTGGCACGTTTCAGTGGCATTTGCAATTCTTTCGAATCTG TACATGGTCGTAATGCCATGGTACCCGCCCAGTACTGGGGCGAATGGAGGCGATGTGAGCTTCTGGTATGCAACA TATTGTGCGGTTGCTCTTGGAATGTAAGTTGTTCCTATTCCAGGTTGTCCCTGTCGGTATAGATCACTGACGTCA AAGAATTAAAACAGTGTCGGTCTGTGTGGAGTCTACTATTATGTCTGGATCAAGCTTCTGCCTCGAATCCAGGGA TTCAAGTGGGAGCAAACGGTTCTCAAACTGGATAATGGTGCCCTGGCGCATCGGCTTGTCAGGGTGCCCAAGAAG GATACCTGA |