© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8682.t1 |
| Gene name | |
| Location | scaffold_36:28401..29574 |
| Strand | + |
| Gene length (bp) | 1173 |
| Transcript length (bp) | 1116 |
| Coding sequence length (bp) | 1116 |
| Protein length (aa) | 372 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00722 | Glyco_hydro_16 | Glycosyl hydrolases family 16 | 2.5E-36 | 62 | 227 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 22 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 303 | 325 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 18.63 | 8.76 | 28.49 |
| 5d_25C | Five days - 25 degrees Celsius | 8.93 | 3.43 | 14.42 |
| 7d_25C | Seven days - 25 degrees Celsius | 6.97 | 2.33 | 11.61 |
| 10d_25C | Ten days - 25 degrees Celsius | 3.98 | 1.06 | 6.89 |
| 7d_15C | Seven days - 15 degrees Celsius | 9.01 | 3.27 | 14.75 |
| 7d_30C | Seven days - 30 degrees Celsius | 7.35 | 2.30 | 12.41 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.020660 | yes |
| 3d_25C | 7d_25C | 0.003197 | yes |
| 3d_25C | 7d_15C | 0.025371 | yes |
| 3d_25C | 7d_30C | 0.004840 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.588587 | no |
| 5d_25C | 7d_15C | 0.987561 | no |
| 5d_25C | 7d_30C | 0.690983 | no |
| 5d_25C | 10d_25C | 0.028409 | yes |
| 7d_25C | 7d_15C | 0.566659 | no |
| 7d_25C | 7d_30C | 0.928840 | no |
| 7d_25C | 10d_25C | 0.168614 | no |
| 7d_15C | 7d_30C | 0.676992 | no |
| 7d_15C | 10d_25C | 0.028642 | yes |
| 7d_30C | 10d_25C | 0.129118 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8682.t1 MRSWFSFLLLSLTTIVGVTNATTEYTGTTCNPLNKTCDADPALGTEHTWLFNSTLDSDLWDMRTGTLDYTSEGAD FIIKTENASTLLVSNFYIFFGVMEAHVKMAKGAGIVSSVILQSDDLDEIDWEWVGYNTSGVQSDFFGKGNTTTSD RGGYHAVANADTEFHNYTSYWDRDRMEWWIDGDLVRTVNYSEPLTVYGKNYPQTPCQVKVSNWPVGVKGQSQGNL EWGGGLVDWDDVPFTMTVSKIRVQDFSTGKEYKYNGTTGTYGSIEVVSGNSTAVTVINKKPEKTLAQKWADLGNG AHIGVYVGAAVAGALMIAGFGFWCMKQRRSGRLQRALNDDEHTAELTTLEQSKLRWRQSELRSKGSYQPVP* |
| Coding | >Pro_DTO377G3_2|g8682.t1 ATGAGATCCTGGTTCTCGTTCCTCCTTTTGTCCCTGACGACGATTGTCGGGGTCACCAATGCCACCACCGAATAC ACGGGGACAACCTGCAACCCCCTCAACAAGACATGTGATGCGGATCCGGCCCTCGGAACAGAGCACACGTGGCTG TTCAACTCAACTCTCGACAGCGATCTCTGGGACATGCGCACCGGCACTCTGGACTATACATCCGAAGGAGCCGAC TTTATCATCAAAACCGAGAACGCGTCGACGCTCCTCGTGTCCAACTTTTATATTTTCTTCGGCGTGATGGAAGCG CACGTCAAGATGGCCAAGGGGGCCGGTATTGTCAGCAGTGTGATCCTGCAATCGGACGATCTCGACGAGATCGAC TGGGAGTGGGTTGGATATAACACGAGTGGAGTGCAGTCCGATTTCTTCGGCAAGGGGAATACCACCACGAGTGAT AGGGGCGGATATCATGCGGTTGCAAATGCCGATACCGAGTTCCACAACTATACCTCGTACTGGGATCGAGACCGC ATGGAATGGTGGATTGACGGTGACTTGGTGCGGACAGTGAACTATTCCGAGCCGTTGACTGTCTACGGTAAAAAC TACCCGCAAACACCGTGTCAGGTCAAGGTTAGCAACTGGCCAGTTGGAGTCAAGGGACAGTCGCAAGGCAATCTG GAATGGGGTGGTGGTTTGGTTGACTGGGACGATGTTCCGTTCACGATGACGGTATCGAAGATCCGCGTTCAAGAC TTCTCCACTGGAAAGGAGTACAAATACAACGGAACCACGGGCACCTATGGCAGTATCGAGGTTGTCAGTGGAAAC TCAACTGCCGTGACAGTAATCAACAAGAAACCAGAGAAGACCCTCGCCCAGAAATGGGCTGATCTTGGCAATGGA GCGCATATCGGTGTGTACGTCGGTGCAGCTGTGGCTGGTGCGCTTATGATTGCCGGATTCGGATTCTGGTGTATG AAGCAGCGTCGGAGCGGCCGTCTACAACGCGCTTTGAACGATGACGAACACACCGCCGAGCTCACGACGTTGGAG CAGTCAAAGTTGAGATGGAGGCAAAGTGAGTTGCGTAGCAAGGGCAGCTACCAGCCGGTACCTTAA |
| Transcript | >Pro_DTO377G3_2|g8682.t1 ATGAGATCCTGGTTCTCGTTCCTCCTTTTGTCCCTGACGACGATTGTCGGGGTCACCAATGCCACCACCGAATAC ACGGGGACAACCTGCAACCCCCTCAACAAGACATGTGATGCGGATCCGGCCCTCGGAACAGAGCACACGTGGCTG TTCAACTCAACTCTCGACAGCGATCTCTGGGACATGCGCACCGGCACTCTGGACTATACATCCGAAGGAGCCGAC TTTATCATCAAAACCGAGAACGCGTCGACGCTCCTCGTGTCCAACTTTTATATTTTCTTCGGCGTGATGGAAGCG CACGTCAAGATGGCCAAGGGGGCCGGTATTGTCAGCAGTGTGATCCTGCAATCGGACGATCTCGACGAGATCGAC TGGGAGTGGGTTGGATATAACACGAGTGGAGTGCAGTCCGATTTCTTCGGCAAGGGGAATACCACCACGAGTGAT AGGGGCGGATATCATGCGGTTGCAAATGCCGATACCGAGTTCCACAACTATACCTCGTACTGGGATCGAGACCGC ATGGAATGGTGGATTGACGGTGACTTGGTGCGGACAGTGAACTATTCCGAGCCGTTGACTGTCTACGGTAAAAAC TACCCGCAAACACCGTGTCAGGTCAAGGTTAGCAACTGGCCAGTTGGAGTCAAGGGACAGTCGCAAGGCAATCTG GAATGGGGTGGTGGTTTGGTTGACTGGGACGATGTTCCGTTCACGATGACGGTATCGAAGATCCGCGTTCAAGAC TTCTCCACTGGAAAGGAGTACAAATACAACGGAACCACGGGCACCTATGGCAGTATCGAGGTTGTCAGTGGAAAC TCAACTGCCGTGACAGTAATCAACAAGAAACCAGAGAAGACCCTCGCCCAGAAATGGGCTGATCTTGGCAATGGA GCGCATATCGGTGTGTACGTCGGTGCAGCTGTGGCTGGTGCGCTTATGATTGCCGGATTCGGATTCTGGTGTATG AAGCAGCGTCGGAGCGGCCGTCTACAACGCGCTTTGAACGATGACGAACACACCGCCGAGCTCACGACGTTGGAG CAGTCAAAGTTGAGATGGAGGCAAAGTGAGTTGCGTAGCAAGGGCAGCTACCAGCCGGTACCTTAA |
| Gene | >Pro_DTO377G3_2|g8682.t1 ATGAGATCCTGGTTCTCGTTCCTCCTTTTGTCCCTGACGACGATTGTCGGGGTCACCAATGCCACCACCGAATAC ACGGGGACAACCTGCAACCCCCTCAACAAGACATGTGATGCGGATCCGGCCCTCGGAACAGAGCACACGTGGCTG TTCAACTCAACTCTCGACAGCGATCTCTGGGACATGCGCACCGGCACTCTGGACTATACATCCGAAGGAGCCGAC TTTATCATCAAAACCGAGAACGCGTCGACGCTCCTCGTGTCCAACTTTTATATTTTCTTCGGCGTGATGGAAGCG CACGTCAAGATGGCCAAGGGGGCCGGTATTGTCAGCAGTGTGATCCTGCAATCGGACGATCTCGACGAGATCGAC TGGGAGTGGGTTGGATATAACACGAGTGGAGTGCAGTCCGATTTCTTCGGCAAGGGGAATACCACCACGAGTGAT AGGGGCGGATATCATGCGGTTGCAAATGCCGATACCGAGTTCCACAACTATACCTCGTACTGGGATCGAGACCGC ATGGAATGGTGGATTGACGGTGACTTGGTGCGGACAGTGAACTATTCCGAGCCGTTGACTGTCTACGGTAAAAAC TACCCGCAAACACCGTGTCAGGTCAAGGTTAGCAACTGGCCAGTTGGAGTCAAGGGACAGTCGCAAGGCAATCTG GAATGGGGTGGTGGTTTGGTTGACTGGGACGATGTTCCGTTCACGATGACGGTATCGAAGATCCGCGTTCAAGAC TTCTCCACTGGAAAGGAGTACAAATACAACGGAACCACGGGCACCTATGGCAGTATCGAGGTTGTCAGGTGAGTT TTGTTCTGAATCGGTTATTCAAAGAATTTCGGACTAACTTCAACTCGCAGTGGAAACTCAACTGCCGTGACAGTA ATCAACAAGAAACCAGAGAAGACCCTCGCCCAGAAATGGGCTGATCTTGGCAATGGAGCGCATATCGGTGTGTAC GTCGGTGCAGCTGTGGCTGGTGCGCTTATGATTGCCGGATTCGGATTCTGGTGTATGAAGCAGCGTCGGAGCGGC CGTCTACAACGCGCTTTGAACGATGACGAACACACCGCCGAGCTCACGACGTTGGAGCAGTCAAAGTTGAGATGG AGGCAAAGTGAGTTGCGTAGCAAGGGCAGCTACCAGCCGGTACCTTAA |