© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8671.t1 |
| Gene name | |
| Location | scaffold_35:231159..232776 |
| Strand | - |
| Gene length (bp) | 1617 |
| Transcript length (bp) | 1617 |
| Coding sequence length (bp) | 1617 |
| Protein length (aa) | 539 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00144 | Beta-lactamase | Beta-lactamase | 2.1E-59 | 12 | 372 |
| PF11954 | DUF3471 | Domain of unknown function (DUF3471) | 2.1E-14 | 421 | 520 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 17.32 | 8.65 | 25.98 |
| 5d_25C | Five days - 25 degrees Celsius | 8.60 | 3.53 | 13.66 |
| 7d_25C | Seven days - 25 degrees Celsius | 6.53 | 2.40 | 10.66 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.42 | 0.50 | 4.35 |
| 7d_15C | Seven days - 15 degrees Celsius | 11.76 | 5.33 | 18.20 |
| 7d_30C | Seven days - 30 degrees Celsius | 6.19 | 2.21 | 10.18 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.016924 | yes |
| 3d_25C | 7d_25C | 0.002761 | yes |
| 3d_25C | 7d_15C | 0.200076 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.485509 | no |
| 5d_25C | 7d_15C | 0.362045 | no |
| 5d_25C | 7d_30C | 0.393039 | no |
| 5d_25C | 10d_25C | 0.001278 | yes |
| 7d_25C | 7d_15C | 0.066809 | no |
| 7d_25C | 7d_30C | 0.924261 | no |
| 7d_25C | 10d_25C | 0.013810 | yes |
| 7d_15C | 7d_30C | 0.050137 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.021163 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8671.t1 MAELPERLDRLRSTIEDLMRIGGTPGLSLAVMSSGNTVYESSFGVRDTAAGLPVTEETIFPICSLTKALTASAMA ILVDEGKLTWDTLVKDVLPSFDSSDETLQNHLTITDILSHRSGMAWAGNVVLGTENNVLIPGKDGLKYINSQPRV LPFRTGMSYNNLQYNLAGYVIEEVSGISWFEFVQSRILDPLGLDRTYLKSPPPGTQNVTQCYNALDDGSTTPIPC PKGGQDWFGGPSGGAWSCIRDLLELYKTFTASFEDQFITGKGATKDSPFKQVSHLTSAKIPMDPPSRNELSYALG WVRAQLPNRLGHIGINPGLMSNGMPTVGKGVPSQLILFHQGSLPGALAIVILLPDTDSVIVVLSNSLALNDVPDW VGQLILEELLEVPESERNDYIEAAHISVAESLKWYPALVGELGSARKNGTSPRALEEYVGTYWDNINVFKIVVNL VDNKLYWRLQGLESEKFQLEHYEDDTFTWLLPRNELSRRGRWVGWDQAAPFWKAVFECNDNGRIDKLVWEHDTGV PPMQLTKEESTKL* |
| Coding | >Pro_DTO377G3_2|g8671.t1 ATGGCAGAACTCCCGGAACGACTGGATCGCTTGCGGTCCACCATCGAAGATTTGATGCGCATCGGCGGGACCCCA GGGCTCTCGCTCGCAGTCATGTCGAGCGGAAACACTGTTTACGAGTCAAGTTTTGGCGTCCGAGACACAGCAGCT GGTCTACCCGTCACTGAGGAAACAATATTTCCCATATGTTCGTTGACAAAGGCTTTGACTGCCTCTGCGATGGCG ATTCTTGTCGACGAGGGTAAACTCACCTGGGATACACTAGTGAAGGACGTTCTTCCATCCTTTGATTCAAGCGAC GAGACGCTGCAGAATCACTTGACTATCACGGACATCCTATCTCATCGATCAGGCATGGCTTGGGCTGGTAATGTG GTCCTCGGTACCGAGAACAACGTTCTCATTCCAGGAAAGGATGGACTGAAATACATCAATTCACAGCCGCGGGTT CTTCCGTTCCGGACAGGAATGTCCTATAACAATCTTCAATATAACCTTGCAGGTTATGTCATCGAGGAAGTCAGT GGCATTTCGTGGTTTGAGTTTGTACAGAGCCGTATTCTCGATCCTCTCGGCTTGGATCGAACCTACCTTAAATCT CCACCTCCGGGCACCCAAAATGTCACTCAGTGCTACAACGCACTTGATGATGGATCCACTACTCCTATTCCTTGC CCTAAGGGAGGCCAAGATTGGTTTGGTGGACCAAGTGGTGGCGCGTGGTCCTGTATCCGTGATCTTTTGGAGTTA TACAAAACGTTCACCGCTAGCTTTGAAGATCAATTCATCACCGGGAAGGGAGCGACCAAAGACTCTCCCTTCAAA CAAGTTTCTCATCTCACTTCCGCCAAAATTCCTATGGATCCACCCTCGAGGAACGAGCTATCATACGCACTCGGA TGGGTCAGAGCCCAGCTTCCCAATCGGCTAGGTCATATCGGAATCAATCCTGGTCTGATGTCCAATGGCATGCCT ACCGTTGGGAAAGGCGTTCCCTCACAGCTCATTCTCTTCCACCAGGGCAGCCTACCTGGCGCCCTCGCAATTGTG ATTCTACTTCCAGACACTGACAGTGTTATTGTTGTACTGTCTAACTCTTTGGCCCTAAATGATGTTCCTGACTGG GTTGGCCAACTCATCCTTGAAGAGCTGCTCGAGGTTCCAGAATCAGAGAGAAATGATTACATCGAAGCAGCCCAC ATCTCGGTCGCTGAGAGCTTGAAGTGGTATCCAGCACTGGTGGGAGAGCTAGGCTCGGCTCGAAAGAACGGAACA TCACCTAGAGCACTAGAGGAGTATGTCGGTACTTACTGGGATAATATCAATGTGTTCAAGATTGTTGTGAATTTG GTGGACAACAAGCTTTACTGGAGGCTGCAAGGGCTGGAGTCAGAAAAGTTCCAACTTGAACACTATGAAGATGAC ACCTTCACTTGGTTACTTCCACGGAATGAGTTATCTAGACGTGGCCGCTGGGTGGGCTGGGACCAAGCGGCACCT TTCTGGAAAGCCGTGTTTGAATGCAACGACAATGGGCGCATTGACAAGTTGGTTTGGGAACACGATACCGGTGTC CCGCCAATGCAGTTGACGAAGGAGGAAAGCACTAAGCTATGA |
| Transcript | >Pro_DTO377G3_2|g8671.t1 ATGGCAGAACTCCCGGAACGACTGGATCGCTTGCGGTCCACCATCGAAGATTTGATGCGCATCGGCGGGACCCCA GGGCTCTCGCTCGCAGTCATGTCGAGCGGAAACACTGTTTACGAGTCAAGTTTTGGCGTCCGAGACACAGCAGCT GGTCTACCCGTCACTGAGGAAACAATATTTCCCATATGTTCGTTGACAAAGGCTTTGACTGCCTCTGCGATGGCG ATTCTTGTCGACGAGGGTAAACTCACCTGGGATACACTAGTGAAGGACGTTCTTCCATCCTTTGATTCAAGCGAC GAGACGCTGCAGAATCACTTGACTATCACGGACATCCTATCTCATCGATCAGGCATGGCTTGGGCTGGTAATGTG GTCCTCGGTACCGAGAACAACGTTCTCATTCCAGGAAAGGATGGACTGAAATACATCAATTCACAGCCGCGGGTT CTTCCGTTCCGGACAGGAATGTCCTATAACAATCTTCAATATAACCTTGCAGGTTATGTCATCGAGGAAGTCAGT GGCATTTCGTGGTTTGAGTTTGTACAGAGCCGTATTCTCGATCCTCTCGGCTTGGATCGAACCTACCTTAAATCT CCACCTCCGGGCACCCAAAATGTCACTCAGTGCTACAACGCACTTGATGATGGATCCACTACTCCTATTCCTTGC CCTAAGGGAGGCCAAGATTGGTTTGGTGGACCAAGTGGTGGCGCGTGGTCCTGTATCCGTGATCTTTTGGAGTTA TACAAAACGTTCACCGCTAGCTTTGAAGATCAATTCATCACCGGGAAGGGAGCGACCAAAGACTCTCCCTTCAAA CAAGTTTCTCATCTCACTTCCGCCAAAATTCCTATGGATCCACCCTCGAGGAACGAGCTATCATACGCACTCGGA TGGGTCAGAGCCCAGCTTCCCAATCGGCTAGGTCATATCGGAATCAATCCTGGTCTGATGTCCAATGGCATGCCT ACCGTTGGGAAAGGCGTTCCCTCACAGCTCATTCTCTTCCACCAGGGCAGCCTACCTGGCGCCCTCGCAATTGTG ATTCTACTTCCAGACACTGACAGTGTTATTGTTGTACTGTCTAACTCTTTGGCCCTAAATGATGTTCCTGACTGG GTTGGCCAACTCATCCTTGAAGAGCTGCTCGAGGTTCCAGAATCAGAGAGAAATGATTACATCGAAGCAGCCCAC ATCTCGGTCGCTGAGAGCTTGAAGTGGTATCCAGCACTGGTGGGAGAGCTAGGCTCGGCTCGAAAGAACGGAACA TCACCTAGAGCACTAGAGGAGTATGTCGGTACTTACTGGGATAATATCAATGTGTTCAAGATTGTTGTGAATTTG GTGGACAACAAGCTTTACTGGAGGCTGCAAGGGCTGGAGTCAGAAAAGTTCCAACTTGAACACTATGAAGATGAC ACCTTCACTTGGTTACTTCCACGGAATGAGTTATCTAGACGTGGCCGCTGGGTGGGCTGGGACCAAGCGGCACCT TTCTGGAAAGCCGTGTTTGAATGCAACGACAATGGGCGCATTGACAAGTTGGTTTGGGAACACGATACCGGTGTC CCGCCAATGCAGTTGACGAAGGAGGAAAGCACTAAGCTATGA |
| Gene | >Pro_DTO377G3_2|g8671.t1 ATGGCAGAACTCCCGGAACGACTGGATCGCTTGCGGTCCACCATCGAAGATTTGATGCGCATCGGCGGGACCCCA GGGCTCTCGCTCGCAGTCATGTCGAGCGGAAACACTGTTTACGAGTCAAGTTTTGGCGTCCGAGACACAGCAGCT GGTCTACCCGTCACTGAGGAAACAATATTTCCCATATGTTCGTTGACAAAGGCTTTGACTGCCTCTGCGATGGCG ATTCTTGTCGACGAGGGTAAACTCACCTGGGATACACTAGTGAAGGACGTTCTTCCATCCTTTGATTCAAGCGAC GAGACGCTGCAGAATCACTTGACTATCACGGACATCCTATCTCATCGATCAGGCATGGCTTGGGCTGGTAATGTG GTCCTCGGTACCGAGAACAACGTTCTCATTCCAGGAAAGGATGGACTGAAATACATCAATTCACAGCCGCGGGTT CTTCCGTTCCGGACAGGAATGTCCTATAACAATCTTCAATATAACCTTGCAGGTTATGTCATCGAGGAAGTCAGT GGCATTTCGTGGTTTGAGTTTGTACAGAGCCGTATTCTCGATCCTCTCGGCTTGGATCGAACCTACCTTAAATCT CCACCTCCGGGCACCCAAAATGTCACTCAGTGCTACAACGCACTTGATGATGGATCCACTACTCCTATTCCTTGC CCTAAGGGAGGCCAAGATTGGTTTGGTGGACCAAGTGGTGGCGCGTGGTCCTGTATCCGTGATCTTTTGGAGTTA TACAAAACGTTCACCGCTAGCTTTGAAGATCAATTCATCACCGGGAAGGGAGCGACCAAAGACTCTCCCTTCAAA CAAGTTTCTCATCTCACTTCCGCCAAAATTCCTATGGATCCACCCTCGAGGAACGAGCTATCATACGCACTCGGA TGGGTCAGAGCCCAGCTTCCCAATCGGCTAGGTCATATCGGAATCAATCCTGGTCTGATGTCCAATGGCATGCCT ACCGTTGGGAAAGGCGTTCCCTCACAGCTCATTCTCTTCCACCAGGGCAGCCTACCTGGCGCCCTCGCAATTGTG ATTCTACTTCCAGACACTGACAGTGTTATTGTTGTACTGTCTAACTCTTTGGCCCTAAATGATGTTCCTGACTGG GTTGGCCAACTCATCCTTGAAGAGCTGCTCGAGGTTCCAGAATCAGAGAGAAATGATTACATCGAAGCAGCCCAC ATCTCGGTCGCTGAGAGCTTGAAGTGGTATCCAGCACTGGTGGGAGAGCTAGGCTCGGCTCGAAAGAACGGAACA TCACCTAGAGCACTAGAGGAGTATGTCGGTACTTACTGGGATAATATCAATGTGTTCAAGATTGTTGTGAATTTG GTGGACAACAAGCTTTACTGGAGGCTGCAAGGGCTGGAGTCAGAAAAGTTCCAACTTGAACACTATGAAGATGAC ACCTTCACTTGGTTACTTCCACGGAATGAGTTATCTAGACGTGGCCGCTGGGTGGGCTGGGACCAAGCGGCACCT TTCTGGAAAGCCGTGTTTGAATGCAACGACAATGGGCGCATTGACAAGTTGGTTTGGGAACACGATACCGGTGTC CCGCCAATGCAGTTGACGAAGGAGGAAAGCACTAAGCTATGA |