© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g866.t1 |
| Gene name | |
| Location | scaffold_01:2311106..2312484 |
| Strand | + |
| Gene length (bp) | 1378 |
| Transcript length (bp) | 1314 |
| Coding sequence length (bp) | 1314 |
| Protein length (aa) | 438 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00722 | Glyco_hydro_16 | Glycosyl hydrolases family 16 | 1.2E-44 | 58 | 224 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 22 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 89.54 | 54.82 | 124.26 |
| 5d_25C | Five days - 25 degrees Celsius | 37.16 | 20.28 | 54.05 |
| 7d_25C | Seven days - 25 degrees Celsius | 53.38 | 29.63 | 77.13 |
| 10d_25C | Ten days - 25 degrees Celsius | 33.22 | 17.92 | 48.52 |
| 7d_15C | Seven days - 15 degrees Celsius | 26.79 | 11.95 | 41.64 |
| 7d_30C | Seven days - 30 degrees Celsius | 47.81 | 27.35 | 68.26 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.019624 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.002761 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.152787 | no |
| 5d_25C | 7d_15C | 0.276910 | no |
| 5d_25C | 7d_30C | 0.348766 | no |
| 5d_25C | 10d_25C | 0.746127 | no |
| 7d_25C | 7d_15C | 0.011388 | yes |
| 7d_25C | 7d_30C | 0.732676 | no |
| 7d_25C | 10d_25C | 0.053152 | no |
| 7d_15C | 7d_30C | 0.037981 | yes |
| 7d_15C | 10d_25C | 0.532445 | no |
| 7d_30C | 10d_25C | 0.154535 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g866.t1 MPSFMKFATAAFAVATPFVSAQTYSDCNPMETTCPANKGLASSSAHFDFTQASSLDQWKISGGQVPTTANGAQFT INKEGDAPTIVSDFYFFYGELSIEMKTSPGQGIVSSAFLQSDDKDEIDWEALGGKTDTVETNYFGKGDTSTYDRE TWVPVSTPQDSFHTYTIQWSKESITWLIDGASLRTVKYADAQGGARFPQTPMNIHLGIWAGGAPTNGQGTIDWAG GLTDYSKGPYTMYIKSITVNNANPAESYTWSDKSGSSDSIKFTGSNAVSSRSPTTTDAATVSSSEAASTTESPST SETPSTTEAPSTTTESTSSAPTTLATRTSISSAESTAASSSSSAESTAESTAASSSGAESTAASSSGAAGASPSG SSSSGSGSGSSSSSSPSSSSGSGSSSSASASASPTFNAAASVAATYLGPVSLLGLVTALLQL* |
| Coding | >Pro_DTO377G3_2|g866.t1 ATGCCGTCGTTCATGAAGTTCGCGACTGCGGCTTTCGCCGTGGCTACACCTTTCGTTTCTGCTCAGACTTACTCT GACTGCAATCCGATGGAGACAACATGCCCTGCCAACAAGGGTCTGGCTTCGTCCAGCGCTCACTTCGACTTCACC CAGGCTAGCTCCCTCGACCAGTGGAAGATCAGTGGCGGACAAGTTCCCACTACCGCCAACGGTGCCCAGTTCACT ATCAACAAGGAAGGAGATGCTCCTACCATCGTCAGCGATTTCTACTTCTTCTACGGCGAATTGTCCATTGAGATG AAGACTTCTCCTGGCCAAGGCATTGTCAGCTCCGCGTTTTTGCAATCCGATGACAAGGATGAGATTGACTGGGAA GCATTGGGCGGAAAGACTGACACCGTTGAGACCAACTACTTCGGCAAGGGCGACACCTCGACTTATGATCGTGAG ACCTGGGTCCCCGTCAGCACTCCTCAGGACTCTTTCCACACCTACACCATCCAATGGTCCAAGGAGAGTATCACC TGGTTGATCGATGGCGCGAGTCTCCGCACTGTCAAGTACGCAGATGCCCAGGGTGGCGCTCGCTTCCCTCAGACC CCTATGAACATCCACCTTGGTATCTGGGCCGGTGGTGCTCCTACCAACGGACAGGGTACCATTGACTGGGCTGGT GGTTTGACCGACTACTCCAAGGGGCCCTACACCATGTACATCAAGAGCATCACTGTTAACAACGCCAACCCCGCC GAGTCTTACACTTGGTCCGACAAGTCTGGCTCCTCCGACAGCATCAAGTTCACCGGGTCCAACGCCGTGAGCTCT CGCAGCCCTACTACTACTGATGCTGCCACCGTCTCCTCTTCCGAGGCTGCTTCCACTACTGAGTCTCCTTCCACC TCCGAGACTCCTTCTACCACCGAGGCTCCTTCTACTACTACCGAGAGCACTTCCAGCGCTCCCACTACTCTGGCT ACCAGGACCTCAATCTCCTCTGCCGAGTCCACTGCCGCTTCTAGCTCTTCATCTGCCGAGTCGACTGCTGAGTCG ACTGCTGCTTCTAGCTCCGGTGCTGAATCCACTGCCGCTTCCAGCTCCGGTGCTGCCGGTGCTTCCCCCAGTGGC TCCAGCAGCTCTGGCTCTGGCTCCGGCTCTAGCTCTAGCTCTAGCCCCAGCTCCAGCTCTGGTTCTGGCTCGTCC TCCAGTGCCAGCGCTAGCGCTAGCCCCACCTTCAACGCAGCTGCCTCTGTCGCTGCTACCTACTTGGGACCCGTG TCCCTCCTGGGTCTGGTGACCGCCCTGCTCCAGCTGTAA |
| Transcript | >Pro_DTO377G3_2|g866.t1 ATGCCGTCGTTCATGAAGTTCGCGACTGCGGCTTTCGCCGTGGCTACACCTTTCGTTTCTGCTCAGACTTACTCT GACTGCAATCCGATGGAGACAACATGCCCTGCCAACAAGGGTCTGGCTTCGTCCAGCGCTCACTTCGACTTCACC CAGGCTAGCTCCCTCGACCAGTGGAAGATCAGTGGCGGACAAGTTCCCACTACCGCCAACGGTGCCCAGTTCACT ATCAACAAGGAAGGAGATGCTCCTACCATCGTCAGCGATTTCTACTTCTTCTACGGCGAATTGTCCATTGAGATG AAGACTTCTCCTGGCCAAGGCATTGTCAGCTCCGCGTTTTTGCAATCCGATGACAAGGATGAGATTGACTGGGAA GCATTGGGCGGAAAGACTGACACCGTTGAGACCAACTACTTCGGCAAGGGCGACACCTCGACTTATGATCGTGAG ACCTGGGTCCCCGTCAGCACTCCTCAGGACTCTTTCCACACCTACACCATCCAATGGTCCAAGGAGAGTATCACC TGGTTGATCGATGGCGCGAGTCTCCGCACTGTCAAGTACGCAGATGCCCAGGGTGGCGCTCGCTTCCCTCAGACC CCTATGAACATCCACCTTGGTATCTGGGCCGGTGGTGCTCCTACCAACGGACAGGGTACCATTGACTGGGCTGGT GGTTTGACCGACTACTCCAAGGGGCCCTACACCATGTACATCAAGAGCATCACTGTTAACAACGCCAACCCCGCC GAGTCTTACACTTGGTCCGACAAGTCTGGCTCCTCCGACAGCATCAAGTTCACCGGGTCCAACGCCGTGAGCTCT CGCAGCCCTACTACTACTGATGCTGCCACCGTCTCCTCTTCCGAGGCTGCTTCCACTACTGAGTCTCCTTCCACC TCCGAGACTCCTTCTACCACCGAGGCTCCTTCTACTACTACCGAGAGCACTTCCAGCGCTCCCACTACTCTGGCT ACCAGGACCTCAATCTCCTCTGCCGAGTCCACTGCCGCTTCTAGCTCTTCATCTGCCGAGTCGACTGCTGAGTCG ACTGCTGCTTCTAGCTCCGGTGCTGAATCCACTGCCGCTTCCAGCTCCGGTGCTGCCGGTGCTTCCCCCAGTGGC TCCAGCAGCTCTGGCTCTGGCTCCGGCTCTAGCTCTAGCTCTAGCCCCAGCTCCAGCTCTGGTTCTGGCTCGTCC TCCAGTGCCAGCGCTAGCGCTAGCCCCACCTTCAACGCAGCTGCCTCTGTCGCTGCTACCTACTTGGGACCCGTG TCCCTCCTGGGTCTGGTGACCGCCCTGCTCCAGCTGTAA |
| Gene | >Pro_DTO377G3_2|g866.t1 ATGCCGTCGTTCATGAAGTTCGCGACTGCGGCTTTCGCCGTGGCTACACCTTTCGTTTCTGCTCAGACTTACTCT GACTGCAATCCGATGGAGACAACATGCCCTGCCAACAAGGGTCTGGCTTCGTCCAGCGCTCACTTCGACTTCACC CAGGCTAGCTCCCTCGACCAGTGGAAGATCAGTGGCGGACAAGTTCCCACTACCGCCAACGGTGCCCAGTTCACT ATCAACAAGGAAGGAGATGCTCCTACCATCGTCAGCGATTTCTACTTCTTCTACGGCGAATTGTCCATTGAGATG AAGACTTCTCCTGGCCAAGGCATTGTCAGCTCCGCGTTTTTGCAATCCGATGACAAGGATGAGATTGACTGGGTA CGTGACATCGAAATCGGATCATTACTTCCAACATACAGAATAATTGCTAACCGAAATACAGGAAGCATTGGGCGG AAAGACTGACACCGTTGAGACCAACTACTTCGGCAAGGGCGACACCTCGACTTATGATCGTGAGACCTGGGTCCC CGTCAGCACTCCTCAGGACTCTTTCCACACCTACACCATCCAATGGTCCAAGGAGAGTATCACCTGGTTGATCGA TGGCGCGAGTCTCCGCACTGTCAAGTACGCAGATGCCCAGGGTGGCGCTCGCTTCCCTCAGACCCCTATGAACAT CCACCTTGGTATCTGGGCCGGTGGTGCTCCTACCAACGGACAGGGTACCATTGACTGGGCTGGTGGTTTGACCGA CTACTCCAAGGGGCCCTACACCATGTACATCAAGAGCATCACTGTTAACAACGCCAACCCCGCCGAGTCTTACAC TTGGTCCGACAAGTCTGGCTCCTCCGACAGCATCAAGTTCACCGGGTCCAACGCCGTGAGCTCTCGCAGCCCTAC TACTACTGATGCTGCCACCGTCTCCTCTTCCGAGGCTGCTTCCACTACTGAGTCTCCTTCCACCTCCGAGACTCC TTCTACCACCGAGGCTCCTTCTACTACTACCGAGAGCACTTCCAGCGCTCCCACTACTCTGGCTACCAGGACCTC AATCTCCTCTGCCGAGTCCACTGCCGCTTCTAGCTCTTCATCTGCCGAGTCGACTGCTGAGTCGACTGCTGCTTC TAGCTCCGGTGCTGAATCCACTGCCGCTTCCAGCTCCGGTGCTGCCGGTGCTTCCCCCAGTGGCTCCAGCAGCTC TGGCTCTGGCTCCGGCTCTAGCTCTAGCTCTAGCCCCAGCTCCAGCTCTGGTTCTGGCTCGTCCTCCAGTGCCAG CGCTAGCGCTAGCCCCACCTTCAACGCAGCTGCCTCTGTCGCTGCTACCTACTTGGGACCCGTGTCCCTCCTGGG TCTGGTGACCGCCCTGCTCCAGCTGTAA |