© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8653.t1 |
| Gene name | |
| Location | scaffold_35:186387..187533 |
| Strand | + |
| Gene length (bp) | 1146 |
| Transcript length (bp) | 1146 |
| Coding sequence length (bp) | 1146 |
| Protein length (aa) | 382 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 13.55 | 5.67 | 21.43 |
| 5d_25C | Five days - 25 degrees Celsius | 19.43 | 9.01 | 29.84 |
| 7d_25C | Seven days - 25 degrees Celsius | 23.13 | 11.16 | 35.10 |
| 10d_25C | Ten days - 25 degrees Celsius | 48.88 | 27.88 | 69.87 |
| 7d_15C | Seven days - 15 degrees Celsius | 6.81 | 2.18 | 11.44 |
| 7d_30C | Seven days - 30 degrees Celsius | 23.50 | 11.47 | 35.53 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.289280 | no |
| 3d_25C | 7d_25C | 0.082771 | no |
| 3d_25C | 7d_15C | 0.045183 | yes |
| 3d_25C | 7d_30C | 0.068107 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.635619 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.588971 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.974005 | no |
| 7d_25C | 10d_25C | 0.002761 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.001804 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8653.t1 MMWKASLVMAMAIPLASAALADYALHTVLDNAAPIFGSYKKVTGGKSEWMKKYHDNTLLVHMNIPGTHDSATGSY NQATQDALRGITDLNQVVVPVPEALTCQDVNFINMLDMGIRAFDLRYAFDPTNTTLIFYHAQALLSEKASVNDVL FGFYKWLDDHPSETIFLSFQYQGSTALYAENNAAVQLELFNTLTSPAARHYFKQTKDELGTLGDARGKITLMRRF DLDQLPDNYTAALPGLHFSPNLWNDNGAAIDLVYNSDKNLTAYIEDYYQPLTPTGSSAVENIRWKYNATTENIHK ATTQHPNSLFWTWASSNNIVNNPPDWPRIMALGNGTHYTPAGGVNQQLVPFLKKQKGKRVGIVMFDFFEQPSNLV DTLLDL* |
| Coding | >Pro_DTO377G3_2|g8653.t1 ATGATGTGGAAGGCTTCCCTTGTTATGGCCATGGCCATCCCGCTGGCGTCCGCCGCCCTGGCGGATTACGCACTG CATACAGTCCTTGACAATGCTGCTCCGATCTTTGGATCGTACAAAAAGGTCACAGGGGGAAAGTCGGAATGGATG AAGAAATATCACGACAACACTTTGCTCGTTCATATGAACATCCCCGGCACCCACGACAGCGCCACGGGAAGTTAC AACCAGGCGACGCAAGATGCCCTTCGGGGCATTACAGATCTCAACCAGGTCGTTGTTCCGGTGCCAGAGGCATTG ACGTGCCAGGATGTGAATTTCATCAACATGCTCGACATGGGAATCCGGGCATTTGATCTGCGATATGCTTTCGAT CCAACAAACACCACTCTCATCTTCTATCATGCACAGGCCCTGCTGTCGGAGAAAGCTAGTGTCAATGATGTGCTC TTTGGCTTTTACAAGTGGCTGGATGATCACCCCTCGGAGACCATTTTCCTGTCATTCCAGTACCAGGGCTCGACA GCTCTGTACGCCGAAAACAACGCGGCTGTGCAGTTGGAGCTCTTCAATACCCTCACCAGCCCCGCAGCGCGCCAT TATTTCAAGCAAACGAAGGATGAATTGGGTACCTTGGGCGACGCACGTGGCAAAATTACTCTCATGCGCCGTTTC GACCTGGACCAGCTTCCGGATAACTACACAGCCGCACTTCCCGGCCTGCACTTCTCGCCCAATCTCTGGAATGAT AACGGCGCCGCCATCGACCTGGTGTACAACTCGGACAAGAACTTGACCGCCTACATCGAGGACTACTACCAGCCG CTCACGCCCACTGGGTCCAGTGCGGTTGAGAACATCAGGTGGAAGTACAACGCCACGACGGAAAACATCCACAAA GCCACTACCCAGCACCCGAACAGTCTCTTCTGGACATGGGCGTCTAGTAACAATATCGTCAACAACCCTCCCGAT TGGCCTCGGATCATGGCACTTGGAAACGGCACCCACTATACACCAGCTGGTGGAGTTAACCAGCAGCTAGTGCCT TTCCTGAAGAAGCAGAAAGGCAAGCGTGTGGGAATCGTGATGTTTGATTTCTTTGAGCAGCCCTCCAACCTGGTT GATACGCTTTTGGATTTGTGA |
| Transcript | >Pro_DTO377G3_2|g8653.t1 ATGATGTGGAAGGCTTCCCTTGTTATGGCCATGGCCATCCCGCTGGCGTCCGCCGCCCTGGCGGATTACGCACTG CATACAGTCCTTGACAATGCTGCTCCGATCTTTGGATCGTACAAAAAGGTCACAGGGGGAAAGTCGGAATGGATG AAGAAATATCACGACAACACTTTGCTCGTTCATATGAACATCCCCGGCACCCACGACAGCGCCACGGGAAGTTAC AACCAGGCGACGCAAGATGCCCTTCGGGGCATTACAGATCTCAACCAGGTCGTTGTTCCGGTGCCAGAGGCATTG ACGTGCCAGGATGTGAATTTCATCAACATGCTCGACATGGGAATCCGGGCATTTGATCTGCGATATGCTTTCGAT CCAACAAACACCACTCTCATCTTCTATCATGCACAGGCCCTGCTGTCGGAGAAAGCTAGTGTCAATGATGTGCTC TTTGGCTTTTACAAGTGGCTGGATGATCACCCCTCGGAGACCATTTTCCTGTCATTCCAGTACCAGGGCTCGACA GCTCTGTACGCCGAAAACAACGCGGCTGTGCAGTTGGAGCTCTTCAATACCCTCACCAGCCCCGCAGCGCGCCAT TATTTCAAGCAAACGAAGGATGAATTGGGTACCTTGGGCGACGCACGTGGCAAAATTACTCTCATGCGCCGTTTC GACCTGGACCAGCTTCCGGATAACTACACAGCCGCACTTCCCGGCCTGCACTTCTCGCCCAATCTCTGGAATGAT AACGGCGCCGCCATCGACCTGGTGTACAACTCGGACAAGAACTTGACCGCCTACATCGAGGACTACTACCAGCCG CTCACGCCCACTGGGTCCAGTGCGGTTGAGAACATCAGGTGGAAGTACAACGCCACGACGGAAAACATCCACAAA GCCACTACCCAGCACCCGAACAGTCTCTTCTGGACATGGGCGTCTAGTAACAATATCGTCAACAACCCTCCCGAT TGGCCTCGGATCATGGCACTTGGAAACGGCACCCACTATACACCAGCTGGTGGAGTTAACCAGCAGCTAGTGCCT TTCCTGAAGAAGCAGAAAGGCAAGCGTGTGGGAATCGTGATGTTTGATTTCTTTGAGCAGCCCTCCAACCTGGTT GATACGCTTTTGGATTTGTGA |
| Gene | >Pro_DTO377G3_2|g8653.t1 ATGATGTGGAAGGCTTCCCTTGTTATGGCCATGGCCATCCCGCTGGCGTCCGCCGCCCTGGCGGATTACGCACTG CATACAGTCCTTGACAATGCTGCTCCGATCTTTGGATCGTACAAAAAGGTCACAGGGGGAAAGTCGGAATGGATG AAGAAATATCACGACAACACTTTGCTCGTTCATATGAACATCCCCGGCACCCACGACAGCGCCACGGGAAGTTAC AACCAGGCGACGCAAGATGCCCTTCGGGGCATTACAGATCTCAACCAGGTCGTTGTTCCGGTGCCAGAGGCATTG ACGTGCCAGGATGTGAATTTCATCAACATGCTCGACATGGGAATCCGGGCATTTGATCTGCGATATGCTTTCGAT CCAACAAACACCACTCTCATCTTCTATCATGCACAGGCCCTGCTGTCGGAGAAAGCTAGTGTCAATGATGTGCTC TTTGGCTTTTACAAGTGGCTGGATGATCACCCCTCGGAGACCATTTTCCTGTCATTCCAGTACCAGGGCTCGACA GCTCTGTACGCCGAAAACAACGCGGCTGTGCAGTTGGAGCTCTTCAATACCCTCACCAGCCCCGCAGCGCGCCAT TATTTCAAGCAAACGAAGGATGAATTGGGTACCTTGGGCGACGCACGTGGCAAAATTACTCTCATGCGCCGTTTC GACCTGGACCAGCTTCCGGATAACTACACAGCCGCACTTCCCGGCCTGCACTTCTCGCCCAATCTCTGGAATGAT AACGGCGCCGCCATCGACCTGGTGTACAACTCGGACAAGAACTTGACCGCCTACATCGAGGACTACTACCAGCCG CTCACGCCCACTGGGTCCAGTGCGGTTGAGAACATCAGGTGGAAGTACAACGCCACGACGGAAAACATCCACAAA GCCACTACCCAGCACCCGAACAGTCTCTTCTGGACATGGGCGTCTAGTAACAATATCGTCAACAACCCTCCCGAT TGGCCTCGGATCATGGCACTTGGAAACGGCACCCACTATACACCAGCTGGTGGAGTTAACCAGCAGCTAGTGCCT TTCCTGAAGAAGCAGAAAGGCAAGCGTGTGGGAATCGTGATGTTTGATTTCTTTGAGCAGCCCTCCAACCTGGTT GATACGCTTTTGGATTTGTGA |