© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8651.t1 |
| Gene name | |
| Location | scaffold_35:182159..183968 |
| Strand | + |
| Gene length (bp) | 1809 |
| Transcript length (bp) | 1740 |
| Coding sequence length (bp) | 1740 |
| Protein length (aa) | 580 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 4.4E-30 | 139 | 520 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 132 | 154 | 22 |
| 2 | 167 | 189 | 22 |
| 3 | 204 | 226 | 22 |
| 4 | 261 | 283 | 22 |
| 5 | 298 | 320 | 22 |
| 6 | 368 | 390 | 22 |
| 7 | 405 | 427 | 22 |
| 8 | 446 | 468 | 22 |
| 9 | 478 | 500 | 22 |
| 10 | 507 | 529 | 22 |
| 11 | 539 | 561 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 53.76 | 32.58 | 74.94 |
| 5d_25C | Five days - 25 degrees Celsius | 74.59 | 45.48 | 103.70 |
| 7d_25C | Seven days - 25 degrees Celsius | 112.48 | 68.50 | 156.46 |
| 10d_25C | Ten days - 25 degrees Celsius | 114.78 | 69.23 | 160.33 |
| 7d_15C | Seven days - 15 degrees Celsius | 153.19 | 89.73 | 216.66 |
| 7d_30C | Seven days - 30 degrees Celsius | 36.48 | 21.05 | 51.91 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.141897 | no |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.085512 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.050710 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.038184 | yes |
| 7d_25C | 7d_15C | 0.179647 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.955497 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.215613 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8651.t1 MESVIREAPFGQLVRLLTNNKYFQYPEEKPDFKLPDTWLQLLNSRDEGKQKNAIRHDSNRSHEHSEPLSRSSTQA SMQFTEARLEADEEHEIEKVESIPIAPKRTKDGSILVDWYYTDDSENPHNWSNLKRALITIVICLYTFVVYTTSA IYTSSTEGVMNEFGVSTLVATLGLSLYVLGYGTGPLIFSPLSEIPVIGRNPVYIVTMFLFVIISIPTAFVGNFAG LMVLRFLQGFFGSPCLASGGASIGDMYSLMSLPYAMMAWVSAAYCGPALGPLLSGFAVPAKGWRWSLFESIWASA PVFILMFIFLPETSSATILLRRAGRLRKIHNNSRFMSQSELNQRNMHISDIAIDALIKPLEITIKDPAVLFVQIY TAIIYGIYYSFFEVFPLVYPADYNMNLGQIGLVFLCIMVSCIIGIAAYASYIHFWMHRRIRRSGFPVNEALLIPA LPASFGPLIGLFLFAWTARASIHWIVPTIGITIYGATVFVVMQCIFMYIPLTYPRYAASLFAANDFFRSALACGS VLFAHPLFGNLGVARGVSLLGGLSVIGIIGIWLLYFYGSRLRALSKFAISDEVE* |
| Coding | >Pro_DTO377G3_2|g8651.t1 ATGGAATCTGTCATTCGAGAGGCCCCATTCGGGCAGCTTGTTCGTCTCTTGACGAACAATAAATACTTTCAATAC CCCGAAGAAAAGCCCGACTTCAAGCTTCCCGACACATGGCTTCAGTTGTTGAACTCTAGGGATGAAGGTAAACAA AAGAACGCCATCCGGCATGACTCCAACCGAAGCCATGAACACAGTGAGCCCCTAAGCCGGTCCTCTACCCAGGCA TCCATGCAATTCACCGAAGCTCGCCTCGAGGCCGACGAAGAACATGAAATCGAGAAAGTCGAATCCATCCCCATC GCCCCCAAGAGAACAAAAGACGGTTCTATCCTCGTTGATTGGTATTATACCGATGATTCGGAGAATCCACACAAC TGGTCCAACCTCAAGCGCGCTCTCATCACTATAGTGATCTGTCTATATACCTTTGTCGTGTATACCACTTCTGCG ATTTACACGTCCTCAACAGAAGGTGTCATGAATGAGTTTGGTGTGAGCACATTGGTTGCTACTTTGGGTCTGTCA CTCTATGTTCTAGGGTATGGTACCGGGCCATTGATCTTCTCTCCACTGAGTGAAATCCCCGTGATTGGACGTAAT CCAGTCTACATCGTCACGATGTTCCTTTTCGTGATAATCTCCATCCCAACAGCTTTTGTGGGCAACTTCGCCGGC CTGATGGTGCTGCGATTTCTGCAAGGTTTCTTTGGCTCGCCCTGTCTCGCATCTGGAGGTGCTTCTATCGGAGAT ATGTATAGCCTAATGTCCCTGCCTTATGCCATGATGGCTTGGGTTTCTGCGGCATACTGTGGACCCGCTCTCGGC CCTCTTCTCAGCGGCTTTGCCGTCCCAGCCAAAGGCTGGCGTTGGTCCCTCTTCGAATCAATCTGGGCCTCCGCC CCGGTTTTCATCCTGATGTTTATTTTCCTCCCGGAGACCAGCAGCGCAACAATACTACTCCGACGCGCTGGCCGT CTACGCAAAATCCACAATAATAGCCGCTTCATGTCGCAGTCCGAACTCAACCAGCGCAATATGCATATCTCAGAC ATTGCCATCGACGCTCTGATCAAGCCCCTGGAAATAACCATCAAAGATCCCGCCGTCCTCTTCGTCCAGATCTAC ACAGCCATCATCTATGGCATCTACTACTCTTTCTTCGAGGTCTTCCCCCTCGTGTATCCAGCCGACTACAACATG AACCTCGGCCAGATCGGTCTAGTCTTCCTATGTATCATGGTCTCATGCATTATCGGTATTGCCGCCTACGCGAGC TACATCCACTTCTGGATGCACCGTCGCATCCGCCGCTCCGGCTTCCCCGTAAATGAGGCTCTTCTTATCCCCGCG CTGCCTGCCTCTTTTGGTCCTCTGATTGGCCTTTTCTTATTCGCCTGGACGGCTCGTGCGTCTATTCACTGGATT GTCCCCACCATCGGTATCACTATCTATGGTGCCACGGTTTTCGTCGTCATGCAATGCATCTTCATGTATATTCCT CTCACCTACCCCAGGTACGCGGCTAGTCTATTCGCTGCGAATGATTTCTTCCGCAGTGCACTTGCATGTGGCAGT GTGCTGTTTGCGCATCCGCTCTTTGGGAATCTGGGCGTTGCTCGAGGTGTCAGTCTTCTTGGTGGACTGAGTGTT ATCGGTATTATCGGTATTTGGTTGCTTTACTTCTATGGTAGTAGGCTTCGTGCTTTGAGCAAATTTGCGATCTCG GATGAGGTTGAATGA |
| Transcript | >Pro_DTO377G3_2|g8651.t1 ATGGAATCTGTCATTCGAGAGGCCCCATTCGGGCAGCTTGTTCGTCTCTTGACGAACAATAAATACTTTCAATAC CCCGAAGAAAAGCCCGACTTCAAGCTTCCCGACACATGGCTTCAGTTGTTGAACTCTAGGGATGAAGGTAAACAA AAGAACGCCATCCGGCATGACTCCAACCGAAGCCATGAACACAGTGAGCCCCTAAGCCGGTCCTCTACCCAGGCA TCCATGCAATTCACCGAAGCTCGCCTCGAGGCCGACGAAGAACATGAAATCGAGAAAGTCGAATCCATCCCCATC GCCCCCAAGAGAACAAAAGACGGTTCTATCCTCGTTGATTGGTATTATACCGATGATTCGGAGAATCCACACAAC TGGTCCAACCTCAAGCGCGCTCTCATCACTATAGTGATCTGTCTATATACCTTTGTCGTGTATACCACTTCTGCG ATTTACACGTCCTCAACAGAAGGTGTCATGAATGAGTTTGGTGTGAGCACATTGGTTGCTACTTTGGGTCTGTCA CTCTATGTTCTAGGGTATGGTACCGGGCCATTGATCTTCTCTCCACTGAGTGAAATCCCCGTGATTGGACGTAAT CCAGTCTACATCGTCACGATGTTCCTTTTCGTGATAATCTCCATCCCAACAGCTTTTGTGGGCAACTTCGCCGGC CTGATGGTGCTGCGATTTCTGCAAGGTTTCTTTGGCTCGCCCTGTCTCGCATCTGGAGGTGCTTCTATCGGAGAT ATGTATAGCCTAATGTCCCTGCCTTATGCCATGATGGCTTGGGTTTCTGCGGCATACTGTGGACCCGCTCTCGGC CCTCTTCTCAGCGGCTTTGCCGTCCCAGCCAAAGGCTGGCGTTGGTCCCTCTTCGAATCAATCTGGGCCTCCGCC CCGGTTTTCATCCTGATGTTTATTTTCCTCCCGGAGACCAGCAGCGCAACAATACTACTCCGACGCGCTGGCCGT CTACGCAAAATCCACAATAATAGCCGCTTCATGTCGCAGTCCGAACTCAACCAGCGCAATATGCATATCTCAGAC ATTGCCATCGACGCTCTGATCAAGCCCCTGGAAATAACCATCAAAGATCCCGCCGTCCTCTTCGTCCAGATCTAC ACAGCCATCATCTATGGCATCTACTACTCTTTCTTCGAGGTCTTCCCCCTCGTGTATCCAGCCGACTACAACATG AACCTCGGCCAGATCGGTCTAGTCTTCCTATGTATCATGGTCTCATGCATTATCGGTATTGCCGCCTACGCGAGC TACATCCACTTCTGGATGCACCGTCGCATCCGCCGCTCCGGCTTCCCCGTAAATGAGGCTCTTCTTATCCCCGCG CTGCCTGCCTCTTTTGGTCCTCTGATTGGCCTTTTCTTATTCGCCTGGACGGCTCGTGCGTCTATTCACTGGATT GTCCCCACCATCGGTATCACTATCTATGGTGCCACGGTTTTCGTCGTCATGCAATGCATCTTCATGTATATTCCT CTCACCTACCCCAGGTACGCGGCTAGTCTATTCGCTGCGAATGATTTCTTCCGCAGTGCACTTGCATGTGGCAGT GTGCTGTTTGCGCATCCGCTCTTTGGGAATCTGGGCGTTGCTCGAGGTGTCAGTCTTCTTGGTGGACTGAGTGTT ATCGGTATTATCGGTATTTGGTTGCTTTACTTCTATGGTAGTAGGCTTCGTGCTTTGAGCAAATTTGCGATCTCG GATGAGGTTGAATGA |
| Gene | >Pro_DTO377G3_2|g8651.t1 ATGGAATCTGTCATTCGAGAGGCCCCATTCGGGCAGCTTGTTCGTCTCTTGACGAACAATAAATACTTTCAATAC CCCGAAGAAAAGCCCGACTTCAAGCTTCCCGACACATGGCTTCAGTTGTTGAACTCTAGGGATGAAGGTAAACAA AAGAACGCCATCCGGCATGACTCCAACCGAAGCCATGAACACAGTGAGCCCCTAAGCCGGTCCTCTACCCAGGCA TCCATGCAATTCACCGAAGCTCGCCTCGAGGCCGACGAAGAACATGAAATCGAGAAAGTCGAATCCATCCCCATC GCCCCCAAGAGAACAAAAGACGGTTCTATCCTCGTTGATTGGTATTATACCGATGATTCGGAGAATCCACACAAC TGGTCCAACCTCAAGCGCGCTCTCATCACTATAGTGATCTGTCTATATACCTTTGTCGTGTATACCACTTCTGCG ATTTACACGTCCTCAACAGAAGGTGTCATGAATGAGTTTGGTGTGAGCACATTGGTTGCTACTTTGGGTCTGTCA CTCTATGTTCTAGGGTATGGTACCGGGCCATTGATCTTCTCTCCACTGAGTGAAATCCCCGTGATTGGACGTAAT CCAGTCTACATCGTCACGATGTTCCTTTTCGTGATAATCTCCATCCCAACAGCTTTTGTGGGCAACTTCGCCGGC CTGATGGTGCTGCGATTTCTGCAAGGTTTCTTTGGCTCGCCCTGTCTCGCATCTGGAGGTGCTTCTATCGGAGAT ATGTATAGCCTAATGTCCCTGCCTTATGCCATGATGGCTTGGGTTTCTGCGGCATACTGTGGACGTAAGTTTCCT TCCCGTTTATATATCGTTATATACACCAAATAACGTTACCTATACTAACACTATACAGCCGCTCTCGGCCCTCTT CTCAGCGGCTTTGCCGTCCCAGCCAAAGGCTGGCGTTGGTCCCTCTTCGAATCAATCTGGGCCTCCGCCCCGGTT TTCATCCTGATGTTTATTTTCCTCCCGGAGACCAGCAGCGCAACAATACTACTCCGACGCGCTGGCCGTCTACGC AAAATCCACAATAATAGCCGCTTCATGTCGCAGTCCGAACTCAACCAGCGCAATATGCATATCTCAGACATTGCC ATCGACGCTCTGATCAAGCCCCTGGAAATAACCATCAAAGATCCCGCCGTCCTCTTCGTCCAGATCTACACAGCC ATCATCTATGGCATCTACTACTCTTTCTTCGAGGTCTTCCCCCTCGTGTATCCAGCCGACTACAACATGAACCTC GGCCAGATCGGTCTAGTCTTCCTATGTATCATGGTCTCATGCATTATCGGTATTGCCGCCTACGCGAGCTACATC CACTTCTGGATGCACCGTCGCATCCGCCGCTCCGGCTTCCCCGTAAATGAGGCTCTTCTTATCCCCGCGCTGCCT GCCTCTTTTGGTCCTCTGATTGGCCTTTTCTTATTCGCCTGGACGGCTCGTGCGTCTATTCACTGGATTGTCCCC ACCATCGGTATCACTATCTATGGTGCCACGGTTTTCGTCGTCATGCAATGCATCTTCATGTATATTCCTCTCACC TACCCCAGGTACGCGGCTAGTCTATTCGCTGCGAATGATTTCTTCCGCAGTGCACTTGCATGTGGCAGTGTGCTG TTTGCGCATCCGCTCTTTGGGAATCTGGGCGTTGCTCGAGGTGTCAGTCTTCTTGGTGGACTGAGTGTTATCGGT ATTATCGGTATTTGGTTGCTTTACTTCTATGGTAGTAGGCTTCGTGCTTTGAGCAAATTTGCGATCTCGGATGAG GTTGAATGA |