© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g865.t1 |
| Gene name | |
| Location | scaffold_01:2306303..2309329 |
| Strand | + |
| Gene length (bp) | 3026 |
| Transcript length (bp) | 2709 |
| Coding sequence length (bp) | 2709 |
| Protein length (aa) | 903 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01055 | Glyco_hydro_31 | Glycosyl hydrolases family 31 | 3.0E-164 | 243 | 789 |
| PF16863 | NtCtMGAM_N | N-terminal barrel of NtMGAM and CtMGAM, maltase-glucoamylase | 5.7E-33 | 41 | 150 |
| PF13802 | Gal_mutarotas_2 | Galactose mutarotase-like | 3.9E-16 | 152 | 217 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 15 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 24.93 | 14.74 | 35.11 |
| 5d_25C | Five days - 25 degrees Celsius | 34.85 | 21.20 | 48.49 |
| 7d_25C | Seven days - 25 degrees Celsius | 34.23 | 20.78 | 47.68 |
| 10d_25C | Ten days - 25 degrees Celsius | 34.37 | 20.91 | 47.82 |
| 7d_15C | Seven days - 15 degrees Celsius | 37.73 | 22.90 | 52.56 |
| 7d_30C | Seven days - 30 degrees Celsius | 34.41 | 20.89 | 47.93 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.141425 | no |
| 3d_25C | 7d_25C | 0.165237 | no |
| 3d_25C | 7d_15C | 0.053498 | no |
| 3d_25C | 7d_30C | 0.154084 | no |
| 3d_25C | 10d_25C | 0.159651 | no |
| 5d_25C | 7d_25C | 0.960436 | no |
| 5d_25C | 7d_15C | 0.790503 | no |
| 5d_25C | 7d_30C | 0.971769 | no |
| 5d_25C | 10d_25C | 0.968876 | no |
| 7d_25C | 7d_15C | 0.739098 | no |
| 7d_25C | 7d_30C | 0.987849 | no |
| 7d_25C | 10d_25C | 0.990746 | no |
| 7d_15C | 7d_30C | 0.753321 | no |
| 7d_15C | 10d_25C | 0.749729 | no |
| 7d_30C | 10d_25C | 0.996553 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g865.t1 MKGALLFLAPLVGAAVLGSTSQLDHCPGYKASNVKQLGQTLTADLSLAGDACNTYGTDLPNLKLLVEAQTETRLH VIIYDADEEVYQVPESVLPRPSSAKGHQKEPALRFDFEEKPFSFRVLRGDEVLFDTTDTKIIFQSQYLNLRTWLP TDPNLYGLGEHSDSLRLPTTNYTRTIWNRDAYGIPSNTNLYGTHPVYVDHRGENGTHGVFFLNSDGMDIKIDRTA DGKQYLEYNTIGGVLDFYFMAGPTPKEVSEQYSEVVGLPAMQSYWTFGFHNCRYGYQDVFDVAEAVYNYSRAGIP LETMWTDIDYMSGRKVFTLDDERFPLEKMRELVSYLHKNDQHYIVMVDPAVSASDNGAYKRGHDEGVFLYRDDER SELYKGVVWPGPTVYPDWFNEDTQKYWNSEFKRFFNPKDGVDIDGLWIDMNEASNFCPYPCTSPEQFTKDDDLPP APPAVRSPPRQIPGFPADFQPGSSSSGASLSQRVKRGDVAVEKRSINEKRSQGGKGQKTGLSGRDLINPLYQIAN EAGSISNKTIDTDLIHAGEGYAEYDTHNLYGTMMSSASREAMLKRRPQVRPLIITRSTFAGAGSHVGHWLGDNLS QWDKLRVSIPQMLAFASIYQVPMVGSDVCGFGGDTTEELCARWAMLGAFSPFYRNHNSLGNLAQEFYRWPVVTEA AKKIIDIRYRLLDYLYTSFHQQTLTGSPFLQPLFYVYPEDSKTFGNELQFFFGDSILVSPVLDEGANSVDAYFPK DLFYDWFTGLAVQGDGSVKTITDLAVTDIPIHIRGGSIIPLRTESAKTTTELRKRGFEILIAPGADGSAAGELYL DDGESIEPASAAEIQFQYKNGKLKILGRFGYHPNVVIEAVTLLGQKNKRRDVEYDAQRQSITKKVDIKLTGPAEV TL* |
| Coding | >Pro_DTO377G3_2|g865.t1 ATGAAAGGCGCACTGCTTTTCCTGGCTCCCCTCGTGGGAGCCGCCGTCCTGGGATCGACATCTCAGCTTGACCAT TGTCCTGGCTACAAGGCTTCCAATGTGAAGCAGTTGGGCCAGACATTGACTGCTGACCTTAGTCTTGCTGGAGAT GCCTGCAATACCTATGGCACTGATCTTCCAAACCTGAAGCTCCTCGTGGAGGCTCAAACTGAAACCCGTCTCCAT GTCATCATCTATGATGCCGATGAGGAGGTCTACCAAGTTCCAGAATCTGTTCTCCCCAGACCCTCGAGCGCAAAA GGTCACCAAAAGGAGCCCGCTCTTCGCTTCGACTTCGAAGAGAAACCTTTCTCATTCCGCGTTCTGCGTGGGGAC GAAGTTCTCTTCGACACTACTGATACAAAGATCATCTTCCAGTCCCAGTACTTGAACTTGCGCACTTGGCTCCCC ACTGATCCTAACCTGTATGGTCTGGGTGAACACAGCGATTCGCTGCGTCTACCTACCACAAACTATACTCGCACG ATCTGGAACCGTGACGCATATGGCATCCCCTCCAACACGAACCTTTACGGTACTCATCCTGTCTACGTTGATCAC CGCGGAGAGAATGGTACTCATGGGGTGTTCTTCTTGAATTCGGATGGAATGGATATCAAGATTGACAGGACTGCT GATGGCAAACAATACCTCGAGTACAACACCATCGGCGGAGTCCTTGACTTCTACTTCATGGCCGGTCCTACTCCC AAGGAAGTGAGCGAGCAGTACTCGGAGGTCGTTGGCCTTCCTGCTATGCAAAGCTACTGGACGTTTGGATTTCAC AACTGTCGGTATGGTTACCAGGATGTATTTGATGTCGCCGAGGCAGTTTACAACTACAGCCGTGCCGGAATCCCA CTCGAGACCATGTGGACCGACATCGACTACATGAGTGGTCGAAAGGTATTTACTCTAGACGATGAGCGGTTCCCT CTAGAGAAGATGCGCGAGTTGGTTTCGTACCTTCACAAGAACGACCAGCACTATATTGTCATGGTCGATCCGGCC GTCAGTGCCTCTGATAATGGTGCTTACAAACGAGGTCACGACGAGGGTGTCTTCCTGTACCGTGACGACGAGCGT AGCGAACTCTACAAAGGCGTCGTCTGGCCTGGCCCAACCGTCTACCCAGACTGGTTCAACGAAGACACCCAGAAA TACTGGAACTCGGAATTCAAGCGATTCTTCAACCCCAAAGACGGTGTCGACATCGACGGTCTCTGGATCGACATG AACGAAGCTTCCAATTTCTGCCCATACCCCTGCACGAGCCCAGAACAGTTTACCAAGGATGACGACTTACCCCCT GCGCCTCCGGCAGTCCGATCGCCTCCCCGCCAGATCCCCGGTTTCCCGGCTGATTTCCAGCCTGGGTCTTCCTCC TCTGGGGCTTCTCTGTCGCAGCGTGTGAAGAGAGGTGATGTTGCTGTCGAGAAACGTAGCATCAACGAGAAACGG AGCCAGGGTGGAAAGGGACAAAAGACTGGCTTGTCTGGTCGCGACCTCATTAACCCGCTCTATCAGATCGCAAAC GAGGCTGGCTCGATTAGCAACAAGACCATTGATACTGATCTCATTCATGCTGGCGAGGGTTACGCCGAGTACGAC ACACACAATCTTTATGGAACTATGATGAGCTCGGCTTCCCGCGAGGCAATGTTGAAGCGTCGACCCCAGGTGCGA CCTTTGATCATCACGCGTAGCACCTTTGCCGGAGCAGGCTCCCACGTCGGCCATTGGCTCGGCGACAACTTGAGC CAATGGGATAAACTGCGCGTGTCCATCCCGCAGATGCTAGCCTTCGCCTCGATTTACCAAGTCCCAATGGTCGGC AGCGACGTCTGCGGCTTCGGCGGAGACACGACGGAAGAGCTTTGCGCGCGCTGGGCCATGCTCGGCGCCTTCTCT CCGTTCTACCGGAACCACAACTCGCTCGGCAACCTGGCCCAGGAATTCTACCGCTGGCCCGTTGTCACCGAGGCC GCGAAGAAGATCATCGATATCAGATACCGTCTGCTCGATTACCTCTACACTTCGTTCCACCAGCAGACCTTGACG GGTAGCCCGTTCCTCCAGCCGCTCTTCTACGTCTACCCGGAGGACAGCAAGACCTTTGGCAACGAGCTGCAGTTC TTCTTCGGTGATTCCATTCTCGTCTCGCCTGTCTTGGATGAAGGCGCCAACTCGGTCGATGCCTATTTCCCCAAG GATCTGTTCTACGATTGGTTTACCGGTCTTGCGGTGCAGGGCGATGGATCCGTCAAGACGATTACCGATCTCGCG GTTACCGATATCCCGATCCACATCCGTGGCGGGAGCATCATCCCCCTCCGTACGGAGAGTGCCAAGACCACGACG GAACTGCGCAAGCGCGGCTTTGAGATTCTCATTGCGCCTGGTGCGGATGGATCCGCGGCGGGTGAGCTGTACCTT GATGATGGCGAGTCGATCGAACCGGCTAGTGCTGCAGAGATTCAGTTCCAGTACAAGAATGGCAAGCTCAAGATC CTGGGCCGGTTCGGGTATCACCCTAATGTGGTTATTGAGGCTGTTACTCTGCTCGGACAGAAGAATAAGCGTCGC GACGTTGAATACGATGCTCAGAGACAGAGCATTACAAAGAAGGTCGACATCAAGTTGACTGGACCTGCTGAGGTG ACTTTGTGA |
| Transcript | >Pro_DTO377G3_2|g865.t1 ATGAAAGGCGCACTGCTTTTCCTGGCTCCCCTCGTGGGAGCCGCCGTCCTGGGATCGACATCTCAGCTTGACCAT TGTCCTGGCTACAAGGCTTCCAATGTGAAGCAGTTGGGCCAGACATTGACTGCTGACCTTAGTCTTGCTGGAGAT GCCTGCAATACCTATGGCACTGATCTTCCAAACCTGAAGCTCCTCGTGGAGGCTCAAACTGAAACCCGTCTCCAT GTCATCATCTATGATGCCGATGAGGAGGTCTACCAAGTTCCAGAATCTGTTCTCCCCAGACCCTCGAGCGCAAAA GGTCACCAAAAGGAGCCCGCTCTTCGCTTCGACTTCGAAGAGAAACCTTTCTCATTCCGCGTTCTGCGTGGGGAC GAAGTTCTCTTCGACACTACTGATACAAAGATCATCTTCCAGTCCCAGTACTTGAACTTGCGCACTTGGCTCCCC ACTGATCCTAACCTGTATGGTCTGGGTGAACACAGCGATTCGCTGCGTCTACCTACCACAAACTATACTCGCACG ATCTGGAACCGTGACGCATATGGCATCCCCTCCAACACGAACCTTTACGGTACTCATCCTGTCTACGTTGATCAC CGCGGAGAGAATGGTACTCATGGGGTGTTCTTCTTGAATTCGGATGGAATGGATATCAAGATTGACAGGACTGCT GATGGCAAACAATACCTCGAGTACAACACCATCGGCGGAGTCCTTGACTTCTACTTCATGGCCGGTCCTACTCCC AAGGAAGTGAGCGAGCAGTACTCGGAGGTCGTTGGCCTTCCTGCTATGCAAAGCTACTGGACGTTTGGATTTCAC AACTGTCGGTATGGTTACCAGGATGTATTTGATGTCGCCGAGGCAGTTTACAACTACAGCCGTGCCGGAATCCCA CTCGAGACCATGTGGACCGACATCGACTACATGAGTGGTCGAAAGGTATTTACTCTAGACGATGAGCGGTTCCCT CTAGAGAAGATGCGCGAGTTGGTTTCGTACCTTCACAAGAACGACCAGCACTATATTGTCATGGTCGATCCGGCC GTCAGTGCCTCTGATAATGGTGCTTACAAACGAGGTCACGACGAGGGTGTCTTCCTGTACCGTGACGACGAGCGT AGCGAACTCTACAAAGGCGTCGTCTGGCCTGGCCCAACCGTCTACCCAGACTGGTTCAACGAAGACACCCAGAAA TACTGGAACTCGGAATTCAAGCGATTCTTCAACCCCAAAGACGGTGTCGACATCGACGGTCTCTGGATCGACATG AACGAAGCTTCCAATTTCTGCCCATACCCCTGCACGAGCCCAGAACAGTTTACCAAGGATGACGACTTACCCCCT GCGCCTCCGGCAGTCCGATCGCCTCCCCGCCAGATCCCCGGTTTCCCGGCTGATTTCCAGCCTGGGTCTTCCTCC TCTGGGGCTTCTCTGTCGCAGCGTGTGAAGAGAGGTGATGTTGCTGTCGAGAAACGTAGCATCAACGAGAAACGG AGCCAGGGTGGAAAGGGACAAAAGACTGGCTTGTCTGGTCGCGACCTCATTAACCCGCTCTATCAGATCGCAAAC GAGGCTGGCTCGATTAGCAACAAGACCATTGATACTGATCTCATTCATGCTGGCGAGGGTTACGCCGAGTACGAC ACACACAATCTTTATGGAACTATGATGAGCTCGGCTTCCCGCGAGGCAATGTTGAAGCGTCGACCCCAGGTGCGA CCTTTGATCATCACGCGTAGCACCTTTGCCGGAGCAGGCTCCCACGTCGGCCATTGGCTCGGCGACAACTTGAGC CAATGGGATAAACTGCGCGTGTCCATCCCGCAGATGCTAGCCTTCGCCTCGATTTACCAAGTCCCAATGGTCGGC AGCGACGTCTGCGGCTTCGGCGGAGACACGACGGAAGAGCTTTGCGCGCGCTGGGCCATGCTCGGCGCCTTCTCT CCGTTCTACCGGAACCACAACTCGCTCGGCAACCTGGCCCAGGAATTCTACCGCTGGCCCGTTGTCACCGAGGCC GCGAAGAAGATCATCGATATCAGATACCGTCTGCTCGATTACCTCTACACTTCGTTCCACCAGCAGACCTTGACG GGTAGCCCGTTCCTCCAGCCGCTCTTCTACGTCTACCCGGAGGACAGCAAGACCTTTGGCAACGAGCTGCAGTTC TTCTTCGGTGATTCCATTCTCGTCTCGCCTGTCTTGGATGAAGGCGCCAACTCGGTCGATGCCTATTTCCCCAAG GATCTGTTCTACGATTGGTTTACCGGTCTTGCGGTGCAGGGCGATGGATCCGTCAAGACGATTACCGATCTCGCG GTTACCGATATCCCGATCCACATCCGTGGCGGGAGCATCATCCCCCTCCGTACGGAGAGTGCCAAGACCACGACG GAACTGCGCAAGCGCGGCTTTGAGATTCTCATTGCGCCTGGTGCGGATGGATCCGCGGCGGGTGAGCTGTACCTT GATGATGGCGAGTCGATCGAACCGGCTAGTGCTGCAGAGATTCAGTTCCAGTACAAGAATGGCAAGCTCAAGATC CTGGGCCGGTTCGGGTATCACCCTAATGTGGTTATTGAGGCTGTTACTCTGCTCGGACAGAAGAATAAGCGTCGC GACGTTGAATACGATGCTCAGAGACAGAGCATTACAAAGAAGGTCGACATCAAGTTGACTGGACCTGCTGAGGTG ACTTTGTGA |
| Gene | >Pro_DTO377G3_2|g865.t1 ATGAAAGGCGCACTGCTTTTCCTGGCTCCCCTCGTGGGAGCCGCCGTCCTGGGATCGACATCTCAGCTTGACCAT TGTCCTGGCTACAAGGCTTCCAATGTGAAGCAGTTGGGCCAGACATTGACTGCTGACCTTAGTCTTGCTGGAGAT GCCTGCAATACCTATGGCACTGATCTTCCAAACCTGAAGCTCCTCGTGGAGGCTCAAACTGGTATGCTTCTTCAT CATTCCCAAGTGAATGTATACTCATAATTCTATAAGAAACCCGTCTCCATGTCATCATCTATGATGCCGATGAGG AGGTCTACCAAGTTCCAGAATCTGTTCTCCCCAGACCCTCGAGCGCAAAAGGTCACCAAAAGGAGCCCGCTCTTC GCTTCGACTTCGAAGAGAAACCTTTCTCATTCCGCGTTCTGCGTGGGGACGAAGTTCTCTTCGACACTACTGATA CAAAGATCATCTTCCAGTCCCAGTACTTGAACTTGCGCACTTGGCTCCCCACTGATCCTAACCTGTATGGTCTGG GTGAACACAGCGATTCGCTGCGTCTACCTACCACAAACTATACTCGCACGATCTGGAACCGTGACGCATATGGCA TCCCCTCCAACACGAACCTTTACGGTACTCATCCTGTCTACGTTGATCACCGCGGAGAGAATGGTACTCATGGGG TGTTCTTCTTGAATTCGGATGGAATGGATATCAAGATTGACAGGACTGCTGATGGCAAACAATACCTCGAGTACA ACACCATCGGCGGAGTCCTTGACTTCTACTTCATGGCCGGTCCTACTCCCAAGGAAGTGAGCGAGCAGTACTCGG AGGTCGTTGGCCTTCCTGCTATGCAAAGCTACTGGACGTTTGGAGTATGTCATTTCTAACTTGAATGTTTTGAGA AGTAATATTCTGATCAGTATTCCTTTAGTTTCACAACTGTCGGTATGGTTACCAGGATGTATTTGATGTCGCCGA GGCAGTTTACAACTACAGCCGTGCCGGAATCCCACTCGAGACCATGTGGACCGACATCGACTACATGAGTGGTCG AAAGGTATTTACTCTAGACGATGAGCGGTTCCCTCTAGAGAAGATGCGCGAGTTGGTTTCGTACCTTCACAAGAA CGACCAGCACTATATTGTCATGGTCGATCCGGCCGTCAGTGCCTCTGGTAAGGGATAATTACTTGTTCCCCTCTC ACTTCTGCTCTAACCCTGTGTGTTACCAGATAATGGTGCTTACAAACGAGGTCACGACGAGGGTGTCTTCCTGTA CCGTGACGACGAGCGTAGCGAACTCTACAAAGGTGAGTTTACCATCAGAAGCACAATTCCCACCTTCCTAACGTA ATCTAGGCGTCGTCTGGCCTGGCCCAACCGTCTACCCAGACTGGTTCAACGAAGACACCCAGAAATACTGGAACT CGGAATTCAAGCGATTCTTCAACCCCAAAGACGGTGTCGACATCGACGGTCTCTGGATCGACATGAACGAAGCTT CCAATTTCTGCCCATACCCCTGCACGAGCCCAGAACAGTTTACCAAGGATGACGACTTACCCCCTGCGCCTCCGG CAGTCCGATCGCCTCCCCGCCAGATCCCCGGTTTCCCGGCTGATTTCCAGCCTGGGTCTTCCTCCTCTGGGGCTT CTCTGTCGCAGCGTGTGAAGAGAGGTGATGTTGCTGTCGAGAAACGTAGCATCAACGAGAAACGGAGCCAGGGTG GAAAGGGACAAAAGACTGGCTTGTCTGGTCGCGACCTCATTAACCCGCTCTATCAGATCGCAAACGAGGCTGGCT CGATTAGCAACAAGACCATTGATACTGATCTCATTCATGCTGGCGAGGGTTACGCCGAGTACGACACACACAATC TTTATGGAACTAGTGAGTCCCCTGTGTTTACTATCAATAACCTTTCTAACAATAACCTAGTGATGAGCTCGGCTT CCCGCGAGGCAATGTTGAAGCGTCGACCCCAGGTGCGACCTTTGATCATCACGCGTAGCACCTTTGCCGGAGCAG GCTCCCACGTCGGCCATTGGTAATATCAACAAATCCCAAATCAGTACCATAGAATATGCTAACCCAATCCCAGGC TCGGCGACAACTTGAGCCAATGGGATAAACTGCGCGTGTCCATCCCGCAGATGCTAGCCTTCGCCTCGATTTACC AAGTCCCAATGGTCGGCAGCGACGTCTGCGGCTTCGGCGGAGACACGACGGAAGAGCTTTGCGCGCGCTGGGCCA TGCTCGGCGCCTTCTCTCCGTTCTACCGGAACCACAACTCGCTCGGCAACCTGGCCCAGGAATTCTACCGCTGGC CCGTTGTCACCGAGGCCGCGAAGAAGATCATCGATATCAGATACCGTCTGCTCGATTACCTCTACACTTCGTTCC ACCAGCAGACCTTGACGGGTAGCCCGTTCCTCCAGCCGCTCTTCTACGTCTACCCGGAGGACAGCAAGACCTTTG GCAACGAGCTGCAGTTCTTCTTCGGTGATTCCATTCTCGTCTCGCCTGTCTTGGATGAAGGCGCCAACTCGGTCG ATGCCTATTTCCCCAAGGATCTGTTCTACGATTGGTTTACCGGTCTTGCGGTGCAGGGCGATGGATCCGTCAAGA CGATTACCGATCTCGCGGTTACCGATATCCCGATCCACATCCGTGGCGGGAGCATCATCCCCCTCCGTACGGAGA GTGCCAAGACCACGACGGAACTGCGCAAGCGCGGCTTTGAGATTCTCATTGCGCCTGGTGCGGATGGATCCGCGG CGGGTGAGCTGTACCTTGATGATGGCGAGTCGATCGAACCGGCTAGTGCTGCAGAGATTCAGTTCCAGTACAAGA ATGGCAAGCTCAAGATCCTGGGCCGGTTCGGGTATCACCCTAATGTGGTTATTGAGGCTGTTACTCTGCTCGGAC AGAAGAATAAGCGTCGCGACGTTGAATACGATGCTCAGAGACAGAGCATTACAAAGAAGGTCGACATCAAGTTGA CTGGACCTGCTGAGGTGACTTTGTGA |