© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8649.t1 |
| Gene name | |
| Location | scaffold_35:177748..179299 |
| Strand | + |
| Gene length (bp) | 1551 |
| Transcript length (bp) | 1434 |
| Coding sequence length (bp) | 1434 |
| Protein length (aa) | 478 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03224 | V-ATPase_H_N | V-ATPase subunit H | 4.8E-81 | 8 | 350 |
| PF11698 | V-ATPase_H_C | V-ATPase subunit H | 8.8E-36 | 357 | 475 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046961 | proton-transporting ATPase activity, rotational mechanism | Yes |
| GO:1902600 | proton transmembrane transport | Yes |
| GO:0000221 | vacuolar proton-transporting V-type ATPase, V1 domain | Yes |
| GO:0015399 | primary active transmembrane transporter activity | No |
| GO:0022853 | active ion transmembrane transporter activity | No |
| GO:0034220 | ion transmembrane transport | No |
| GO:0015078 | proton transmembrane transporter activity | No |
| GO:0032991 | protein-containing complex | No |
| GO:0098655 | cation transmembrane transport | No |
| GO:0022804 | active transmembrane transporter activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0009678 | pyrophosphate hydrolysis-driven proton transmembrane transporter activity | No |
| GO:0140657 | ATP-dependent activity | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0042625 | ATPase-coupled ion transmembrane transporter activity | No |
| GO:0019829 | ATPase-coupled cation transmembrane transporter activity | No |
| GO:0055085 | transmembrane transport | No |
| GO:0042626 | ATPase-coupled transmembrane transporter activity | No |
| GO:0033180 | proton-transporting V-type ATPase, V1 domain | No |
| GO:0009987 | cellular process | No |
| GO:0098796 | membrane protein complex | No |
| GO:0005215 | transporter activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0098662 | inorganic cation transmembrane transport | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0006811 | ion transport | No |
| GO:0006812 | cation transport | No |
| GO:0098660 | inorganic ion transmembrane transport | No |
| GO:0044769 | ATPase activity, coupled to transmembrane movement of ions, rotational mechanism | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0033178 | proton-transporting two-sector ATPase complex, catalytic domain | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 134.24 | 81.81 | 186.67 |
| 5d_25C | Five days - 25 degrees Celsius | 181.79 | 110.39 | 253.20 |
| 7d_25C | Seven days - 25 degrees Celsius | 205.39 | 124.00 | 286.77 |
| 10d_25C | Ten days - 25 degrees Celsius | 286.09 | 168.06 | 404.12 |
| 7d_15C | Seven days - 15 degrees Celsius | 155.58 | 94.48 | 216.68 |
| 7d_30C | Seven days - 30 degrees Celsius | 169.60 | 103.09 | 236.11 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.177837 | no |
| 3d_25C | 7d_25C | 0.046955 | yes |
| 3d_25C | 7d_15C | 0.577587 | no |
| 3d_25C | 7d_30C | 0.323665 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.661811 | no |
| 5d_25C | 7d_15C | 0.548198 | no |
| 5d_25C | 7d_30C | 0.817975 | no |
| 5d_25C | 10d_25C | 0.037576 | yes |
| 7d_25C | 7d_15C | 0.229796 | no |
| 7d_25C | 7d_30C | 0.440087 | no |
| 7d_25C | 10d_25C | 0.152189 | no |
| 7d_15C | 7d_30C | 0.767240 | no |
| 7d_15C | 10d_25C | 0.003625 | yes |
| 7d_30C | 10d_25C | 0.012303 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8649.t1 MSLEPPTYLSSLQNNIRARPIPWEGAVRAGNITDDHLKKIKAVDKVRKEQRRQTIEGDLAGYTDLLAGGAHGKSV LDSASRRTDIVQYILVLASDLIQDVPALANSLVSHPEPYKPFLPFLQHSANAEDPIPLLTSTFLTALVSHSLVAS SKPAPRDNEALPQLYTYLSTLTKNQDSGLQDIGVQGFSELLRTSRAREIFWAQRQETLTPLIDTLRAAAGAKDNV SNASTLGSSTRSVEPGLAGGIGLQLLYRVLLVLWQLAFEGALVGDELQENYEIIQLYIHLLRLSPKEKTTRLLVA TLYSLCSSNRTTLLPIAVFLRLPALLTNLSGRHLTDPDLLEDLNALSSMLEEYTKTQTTFDEYAAEVQTGHLRWS PPHKNPTFWKDNARRIVEESNGALPKKLAEILSKSWDNDKQVLAIACSDVGNLVKEVPERRGQLERLGLKTRVME LMVDQDESVRWESLHAVGEWLRYTFEG* |
| Coding | >Pro_DTO377G3_2|g8649.t1 ATGTCACTGGAGCCACCCACCTACCTCAGCTCCCTCCAGAATAACATCCGAGCTCGGCCAATTCCGTGGGAGGGT GCCGTCCGGGCGGGCAACATCACCGATGACCACTTGAAGAAGATCAAGGCGGTGGATAAGGTGCGCAAGGAGCAA CGCCGTCAGACGATAGAAGGAGATCTTGCTGGATACACAGATCTGTTGGCCGGCGGTGCACACGGAAAGAGTGTC TTGGACTCGGCCTCGAGAAGGACCGATATTGTGCAGTATATACTGGTGCTGGCCTCGGACTTGATTCAAGATGTG CCTGCTTTGGCCAACTCGCTTGTTTCTCACCCCGAACCGTACAAGCCCTTCCTACCATTCTTGCAGCACTCGGCA AACGCCGAAGACCCCATTCCTCTGCTCACGTCCACCTTCCTCACGGCGCTCGTGTCGCACAGTCTCGTTGCCTCA TCTAAACCTGCACCCCGCGACAATGAGGCTCTTCCACAGCTCTACACCTATCTCTCTACCTTGACCAAGAATCAG GATAGTGGACTCCAGGATATTGGTGTCCAAGGATTCTCTGAGCTGCTAAGAACAAGCCGAGCCCGAGAAATCTTT TGGGCGCAACGTCAAGAGACCTTGACCCCCTTGATCGACACTCTTCGAGCTGCGGCGGGTGCTAAAGACAACGTC AGTAACGCAAGCACACTGGGAAGCAGCACTCGCAGCGTCGAGCCTGGTCTCGCCGGTGGTATTGGCCTTCAGCTT CTATATCGGGTGCTCCTTGTTCTATGGCAGCTTGCGTTTGAAGGCGCTCTCGTTGGTGATGAACTTCAAGAGAAC TATGAAATTATCCAACTGTACATCCACCTTCTGCGTCTCTCACCGAAAGAAAAGACCACTCGGTTGCTTGTTGCA ACTCTGTACAGTCTTTGCTCCAGCAACCGGACAACTCTGCTACCCATCGCCGTGTTCCTTCGACTGCCCGCCCTC CTGACTAACTTGTCTGGTCGTCATCTGACCGATCCCGACCTGCTCGAAGATCTCAACGCACTCTCTTCCATGCTG GAGGAGTACACCAAGACACAGACCACCTTTGACGAATATGCCGCCGAAGTTCAGACTGGCCACCTCCGCTGGTCG CCCCCTCACAAGAACCCGACCTTCTGGAAAGATAACGCTCGACGAATTGTTGAGGAGTCGAACGGCGCTTTGCCC AAGAAACTGGCCGAGATCCTATCTAAGAGTTGGGATAACGACAAGCAGGTACTGGCTATTGCTTGCAGCGACGTA GGTAACTTAGTGAAGGAGGTTCCCGAACGCCGTGGGCAGTTGGAGCGACTAGGCCTAAAGACGCGGGTGATGGAA CTGATGGTTGATCAAGATGAATCAGTACGGTGGGAGAGCTTGCACGCTGTCGGCGAATGGCTTCGATATACCTTT GAGGGCTGA |
| Transcript | >Pro_DTO377G3_2|g8649.t1 ATGTCACTGGAGCCACCCACCTACCTCAGCTCCCTCCAGAATAACATCCGAGCTCGGCCAATTCCGTGGGAGGGT GCCGTCCGGGCGGGCAACATCACCGATGACCACTTGAAGAAGATCAAGGCGGTGGATAAGGTGCGCAAGGAGCAA CGCCGTCAGACGATAGAAGGAGATCTTGCTGGATACACAGATCTGTTGGCCGGCGGTGCACACGGAAAGAGTGTC TTGGACTCGGCCTCGAGAAGGACCGATATTGTGCAGTATATACTGGTGCTGGCCTCGGACTTGATTCAAGATGTG CCTGCTTTGGCCAACTCGCTTGTTTCTCACCCCGAACCGTACAAGCCCTTCCTACCATTCTTGCAGCACTCGGCA AACGCCGAAGACCCCATTCCTCTGCTCACGTCCACCTTCCTCACGGCGCTCGTGTCGCACAGTCTCGTTGCCTCA TCTAAACCTGCACCCCGCGACAATGAGGCTCTTCCACAGCTCTACACCTATCTCTCTACCTTGACCAAGAATCAG GATAGTGGACTCCAGGATATTGGTGTCCAAGGATTCTCTGAGCTGCTAAGAACAAGCCGAGCCCGAGAAATCTTT TGGGCGCAACGTCAAGAGACCTTGACCCCCTTGATCGACACTCTTCGAGCTGCGGCGGGTGCTAAAGACAACGTC AGTAACGCAAGCACACTGGGAAGCAGCACTCGCAGCGTCGAGCCTGGTCTCGCCGGTGGTATTGGCCTTCAGCTT CTATATCGGGTGCTCCTTGTTCTATGGCAGCTTGCGTTTGAAGGCGCTCTCGTTGGTGATGAACTTCAAGAGAAC TATGAAATTATCCAACTGTACATCCACCTTCTGCGTCTCTCACCGAAAGAAAAGACCACTCGGTTGCTTGTTGCA ACTCTGTACAGTCTTTGCTCCAGCAACCGGACAACTCTGCTACCCATCGCCGTGTTCCTTCGACTGCCCGCCCTC CTGACTAACTTGTCTGGTCGTCATCTGACCGATCCCGACCTGCTCGAAGATCTCAACGCACTCTCTTCCATGCTG GAGGAGTACACCAAGACACAGACCACCTTTGACGAATATGCCGCCGAAGTTCAGACTGGCCACCTCCGCTGGTCG CCCCCTCACAAGAACCCGACCTTCTGGAAAGATAACGCTCGACGAATTGTTGAGGAGTCGAACGGCGCTTTGCCC AAGAAACTGGCCGAGATCCTATCTAAGAGTTGGGATAACGACAAGCAGGTACTGGCTATTGCTTGCAGCGACGTA GGTAACTTAGTGAAGGAGGTTCCCGAACGCCGTGGGCAGTTGGAGCGACTAGGCCTAAAGACGCGGGTGATGGAA CTGATGGTTGATCAAGATGAATCAGTACGGTGGGAGAGCTTGCACGCTGTCGGCGAATGGCTTCGATATACCTTT GAGGGCTGA |
| Gene | >Pro_DTO377G3_2|g8649.t1 ATGTCACTGGAGCCACCCACCTACCTCAGCTCCCTCCAGAATAACATCCGAGCTCGGCCAATTCCGTGGGAGGGT GCCGTCCGGGCGGGCAACATCACCGATGACCACTTGAAGAAGATCAAGGCGGTGGATAAGGTGCGCAAGGAGCAA CGCCGTCAGACGATAGAAGGAGATCTTGCTGGATACACAGATCTGTTGGCCGGCGGTGCACACGGAAAGAGTGTC TTGGACTCGGCCTCGAGAAGGACCGATATTGTGCAGTATATACTGGTGCTGGCCTCGGACTTGATTCAAGGTATA ACCTACTAGCGGAGCTGAAGTTCTGAGGAATCATACTGACTCATATTAAAAAAGATGTGCCTGCTTTGGCCAACT CGCTTGTTTCTCACCCCGAACCGTACAAGCCCTTCCTACCATTCTTGCAGCACTCGGCAAACGCCGAAGACCCCA TTCCTCTGCTCACGTCCACCTTCCTCACGGCGCTCGTGTCGCACAGTCTCGTTGCCTCATCTAAACCTGCACCCC GCGACAATGAGGCTCTTCCACAGCTCTACACCTATCTCTCTACCTTGACCAAGAATCAGGATAGTGGACTCCAGG ATATTGGTGTCCAAGGATTCTCTGAGCTGCTAAGAACAAGCCGAGCCCGAGAAATCTTTTGGGCGCAACGTCAAG AGACCTTGACCCCCTTGATCGACACTCTTCGAGCTGCGGCGGGTGCTAAAGACAACGTCAGTAACGCAAGCACAC TGGGAAGCAGCACTCGCAGCGTCGAGCCTGGTCTCGCCGGTGGTATTGGCCTTCAGCTTCTATATCGGGTGCTCC TTGTTCTATGGCAGCTTGCGTTTGAAGGCGCTCTCGTTGGTGATGAACTTCAAGAGTGAGTGATGTGAAGACAAG AGATCGAATATACACTCTGAGCTACTAACCCCACACAGGAACTATGAAATTATCCAACTGTACATCCACCTTCTG CGTCTCTCACCGAAAGAAAAGACCACTCGGTTGCTTGTTGCAACTCTGTACAGTCTTTGCTCCAGCAACCGGACA ACTCTGCTACCCATCGCCGTGTTCCTTCGACTGCCCGCCCTCCTGACTAACTTGTCTGGTCGTCATCTGACCGAT CCCGACCTGCTCGAAGATCTCAACGCACTCTCTTCCATGCTGGAGGAGTACACCAAGACACAGACCACCTTTGAC GAATATGCCGCCGAAGTTCAGACTGGCCACCTCCGCTGGTCGCCCCCTCACAAGAACCCGACCTTCTGGAAAGAT AACGCTCGACGAATTGTTGAGGAGTCGAACGGCGCTTTGCCCAAGAAACTGGCCGAGATCCTATCTAAGAGTTGG GATAACGACAAGCAGGTACTGGCTATTGCTTGCAGCGACGTAGGTAACTTAGTGAAGGAGGTTCCCGAACGCCGT GGGCAGTTGGAGCGACTAGGCCTAAAGACGCGGGTGATGGAACTGATGGTTGATCAAGATGAATCAGTACGGTGG GAGAGCTTGCACGCTGTCGGCGAATGGCTTCGATATACCTTTGAGGGCTGA |