© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8646.t1 |
| Gene name | |
| Location | scaffold_35:171116..172190 |
| Strand | - |
| Gene length (bp) | 1074 |
| Transcript length (bp) | 708 |
| Coding sequence length (bp) | 708 |
| Protein length (aa) | 236 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 31 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 35 | 22 |
| 2 | 50 | 68 | 18 |
| 3 | 80 | 102 | 22 |
| 4 | 112 | 134 | 22 |
| 5 | 147 | 164 | 17 |
| 6 | 179 | 201 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1.08 | 0.00 | 2.36 |
| 5d_25C | Five days - 25 degrees Celsius | 0.72 | 0.00 | 1.74 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.77 | 0.00 | 1.83 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.44 | 0.00 | 1.14 |
| 7d_15C | Seven days - 15 degrees Celsius | 2.09 | 0.00 | 4.48 |
| 7d_30C | Seven days - 30 degrees Celsius | 4.12 | 0.32 | 7.91 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.681157 | no |
| 3d_25C | 7d_25C | 0.739551 | no |
| 3d_25C | 7d_15C | 0.374232 | no |
| 3d_25C | 7d_30C | 0.034125 | yes |
| 3d_25C | 10d_25C | 0.355909 | no |
| 5d_25C | 7d_25C | 0.969816 | no |
| 5d_25C | 7d_15C | 0.187895 | no |
| 5d_25C | 7d_30C | 0.030434 | yes |
| 5d_25C | 10d_25C | 0.676903 | no |
| 7d_25C | 7d_15C | 0.250917 | no |
| 7d_25C | 7d_30C | 0.053498 | no |
| 7d_25C | 10d_25C | 1.000000 | no |
| 7d_15C | 7d_30C | 0.314955 | no |
| 7d_15C | 10d_25C | 0.120090 | no |
| 7d_30C | 10d_25C | 0.040199 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8646.t1 MDMDELNHPAINIWTFFALAVLDIAVNAAAGPAAVATAAHVNGSPLTARALQLGALAGVTKSGVLAFIEFAGYAG LPTPAWILLALVASGFGTCVLVTAEISNLVLGETPSALLIAAVVAAIPLSGECMGIYQSAGGLYGGKPQTQLCVM GFNALGGYVFARMAHNGGYDVCPYSVAAAAGAVYGVITGFFHVILGCLAGFTHYESTNGEYEIRNVFGVARGYNP NWARNVGHGV* |
| Coding | >Pro_DTO377G3_2|g8646.t1 ATGGATATGGACGAGCTCAATCATCCTGCTATTAACATATGGACGTTCTTCGCCTTGGCTGTGCTAGACATTGCA GTAAACGCTGCCGCCGGTCCAGCTGCAGTGGCGACCGCCGCGCATGTCAATGGGAGCCCACTGACAGCGAGAGCA CTACAACTCGGTGCGCTCGCTGGAGTCACTAAATCAGGGGTGTTAGCATTTATCGAATTCGCAGGGTACGCGGGC TTGCCAACGCCCGCGTGGATACTGTTGGCTCTGGTGGCAAGTGGCTTTGGAACTTGTGTCCTGGTCACGGCGGAG ATTAGCAATTTGGTTCTTGGAGAAACACCAAGCGCATTGCTTATTGCGGCTGTTGTCGCTGCTATTCCCCTCTCG GGAGAATGTATGGGGATATATCAATCGGCTGGGGGGCTATATGGTGGCAAACCTCAGACACAACTTTGTGTTATG GGGTTCAATGCCTTGGGAGGATACGTCTTTGCTCGTATGGCACATAACGGAGGCTACGATGTCTGCCCTTACAGT GTTGCTGCCGCAGCTGGGGCTGTTTACGGTGTCATCACCGGCTTCTTCCATGTCATCCTTGGTTGTCTAGCCGGA TTCACCCACTATGAAAGCACAAATGGGGAATATGAGATACGGAATGTATTTGGGGTTGCGCGAGGGTATAATCCC AATTGGGCACGAAATGTCGGGCATGGAGTCTGA |
| Transcript | >Pro_DTO377G3_2|g8646.t1 ATGGATATGGACGAGCTCAATCATCCTGCTATTAACATATGGACGTTCTTCGCCTTGGCTGTGCTAGACATTGCA GTAAACGCTGCCGCCGGTCCAGCTGCAGTGGCGACCGCCGCGCATGTCAATGGGAGCCCACTGACAGCGAGAGCA CTACAACTCGGTGCGCTCGCTGGAGTCACTAAATCAGGGGTGTTAGCATTTATCGAATTCGCAGGGTACGCGGGC TTGCCAACGCCCGCGTGGATACTGTTGGCTCTGGTGGCAAGTGGCTTTGGAACTTGTGTCCTGGTCACGGCGGAG ATTAGCAATTTGGTTCTTGGAGAAACACCAAGCGCATTGCTTATTGCGGCTGTTGTCGCTGCTATTCCCCTCTCG GGAGAATGTATGGGGATATATCAATCGGCTGGGGGGCTATATGGTGGCAAACCTCAGACACAACTTTGTGTTATG GGGTTCAATGCCTTGGGAGGATACGTCTTTGCTCGTATGGCACATAACGGAGGCTACGATGTCTGCCCTTACAGT GTTGCTGCCGCAGCTGGGGCTGTTTACGGTGTCATCACCGGCTTCTTCCATGTCATCCTTGGTTGTCTAGCCGGA TTCACCCACTATGAAAGCACAAATGGGGAATATGAGATACGGAATGTATTTGGGGTTGCGCGAGGGTATAATCCC AATTGGGCACGAAATGTCGGGCATGGAGTCTGA |
| Gene | >Pro_DTO377G3_2|g8646.t1 ATGGATATGGACGAGCTCAATCATCCTGCTATTAACAGTAAGTGTCATGTTTTGGACCCAGAGGAAATCAGAATG ACTTCCTACATGTGACTTCATCATGCCTCCACTCAATACTTACCATGTCCCTTACTCTAGTATGGACGTTCTTCG CCTTGGCTGTGCTAGACATTGCAGTAAACGCTGCCGCCGGTCCAGCTGCAGTGGCGACCGCCGCGCATGTCAATG GGAGCCCACTGACAGCGAGAGCACTACAACTCGGTGCGCTCGCTGGAGTCACTAAATCAGGGGTGTTAGCATTTA TCGAATTCGCAGGGTACGCGGGCTTGCCAACGCCCGCGTGGATACTGTTGGCTCTGGTGGCAAGTGGCTTTGGAA CTTGTGTCCTGGTCACGGCGGAGATTAGCAATTTGGTTCTTGGAGAAAGTGAGTGGAAACCCGTCCACTGAAGCA CTGTTCAGCTAGAGCTCTGTGCGGCTCACGTTGGCGGTCATTATCATGACCCATCTAGTCATTGTACTAACGATA TATAGCACCAAGCGCATTGCTTATTGCGGCTGTTGTCGCTGCTATTCCCCTCTCGGGAGAATGTATGGGGATATA TCAATGTAAGTCTTTTCTCCTCGCTTGCAGCTCCGTTGCTAATCTTTTCCTGTCCTTCAGCGGCTGGGGGGCTAT ATGGTGGCAAACCTCAGACACAACTTTGTGTTATGGGGTTCAATGCCTTGGGAGGATACGTCTTTGCTCGTATGG CACATAACGGAGGTTCGTTGCCGTCTCTCCTACATCATGAAAGCTTCGGGGTCGCTCTCTTCGCTGCTCCTGTTG GATCGGTTGAATGATTTAACTAATACTTAACTTGAACCTGCAGGCTACGATGTCTGCCCTTACAGTGTTGCTGCC GCAGCTGGGGCTGTTTACGGTGTCATCACCGGCTTCTTCCATGTCATCCTTGGTTGTCTAGCCGGATTCACCCAC TATGAAAGCACAAATGGGGAATATGAGATACGGAATGTATTTGGGGTTGCGCGAGGGTATAATCCCAATTGGGCA CGAAATGTCGGGCATGGAGTCTGA |