© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8638.t1 |
| Gene name | |
| Location | scaffold_35:154777..156098 |
| Strand | - |
| Gene length (bp) | 1321 |
| Transcript length (bp) | 1164 |
| Coding sequence length (bp) | 1164 |
| Protein length (aa) | 388 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02773 | S-AdoMet_synt_C | S-adenosylmethionine synthetase, C-terminal domain | 1.1E-65 | 244 | 380 |
| PF02772 | S-AdoMet_synt_M | S-adenosylmethionine synthetase, central domain | 2.0E-45 | 122 | 242 |
| PF00438 | S-AdoMet_synt_N | S-adenosylmethionine synthetase, N-terminal domain | 3.3E-43 | 10 | 107 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006556 | S-adenosylmethionine biosynthetic process | Yes |
| GO:0004478 | methionine adenosyltransferase activity | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0044272 | sulfur compound biosynthetic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0006790 | sulfur compound metabolic process | No |
| GO:0016740 | transferase activity | No |
| GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | No |
| GO:0046500 | S-adenosylmethionine metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 237.30 | 144.09 | 330.51 |
| 5d_25C | Five days - 25 degrees Celsius | 238.74 | 143.42 | 334.05 |
| 7d_25C | Seven days - 25 degrees Celsius | 268.81 | 154.94 | 382.69 |
| 10d_25C | Ten days - 25 degrees Celsius | 189.58 | 112.46 | 266.70 |
| 7d_15C | Seven days - 15 degrees Celsius | 340.69 | 163.48 | 517.89 |
| 7d_30C | Seven days - 30 degrees Celsius | 157.24 | 94.59 | 219.90 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.986117 | no |
| 3d_25C | 7d_25C | 0.658099 | no |
| 3d_25C | 7d_15C | 0.157056 | no |
| 3d_25C | 7d_30C | 0.047876 | yes |
| 3d_25C | 10d_25C | 0.358492 | no |
| 5d_25C | 7d_25C | 0.680085 | no |
| 5d_25C | 7d_15C | 0.166610 | no |
| 5d_25C | 7d_30C | 0.045566 | yes |
| 5d_25C | 10d_25C | 0.348490 | no |
| 7d_25C | 7d_15C | 0.411560 | no |
| 7d_25C | 7d_30C | 0.013211 | yes |
| 7d_25C | 10d_25C | 0.132659 | no |
| 7d_15C | 7d_30C | 0.001804 | yes |
| 7d_15C | 10d_25C | 0.018295 | yes |
| 7d_30C | 10d_25C | 0.470305 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8638.t1 MGSVANSGTFLFTSESVGEGHPDKIADQVSDAILDACLAEDPLSKVACETATKTGMIMVFGEITTKAHLDYQKII RGAIKDIGYDASEKGFDYKTCNVLVAIEQQSPDIAQGLHYEEALEKLGAGDQGIMFGYATDETPELLPLTVLLAH KLNAAMKAARQDGSIPWLLPDTKTQVTIEYAHDNGAVKPLRVDTVVVSAQHTDDVSTEELRATIKEKIVQKVIPA ELLDDRTVYHIQPSGRFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYSKVDRSAAYVARWIAKSLVNA KLARRALVQLSYAIGVAEPLSIFVETYGTSSKTSDELVQIIRDNFDLRPGVIVKDLDLAKPIYYQTAKNGHFTNQ EFSWESPRTLKF* |
| Coding | >Pro_DTO377G3_2|g8638.t1 ATGGGTTCAGTTGCAAACAGCGGCACTTTCCTCTTCACTTCCGAGTCTGTCGGTGAGGGTCACCCCGATAAGATT GCTGATCAGGTTTCCGATGCTATCCTCGATGCCTGCCTTGCTGAGGATCCCCTCTCCAAGGTCGCTTGCGAGACG GCCACCAAGACCGGTATGATCATGGTCTTCGGTGAGATTACCACCAAAGCCCACCTGGACTACCAGAAGATTATC CGTGGCGCTATCAAGGACATCGGTTACGATGCCTCCGAGAAGGGCTTCGACTACAAGACCTGTAACGTCTTGGTT GCCATTGAGCAGCAGTCTCCCGATATCGCTCAGGGTCTTCACTACGAGGAGGCCCTTGAGAAGCTCGGTGCCGGT GACCAGGGTATCATGTTCGGCTATGCCACCGACGAGACCCCTGAGCTTCTGCCCTTGACTGTCCTCCTCGCCCAC AAGCTTAATGCTGCCATGAAGGCCGCCCGTCAGGATGGCTCCATCCCCTGGTTGCTCCCCGATACCAAGACCCAG GTTACCATTGAGTATGCCCACGACAACGGTGCCGTCAAGCCTCTGCGCGTCGACACTGTCGTCGTCTCCGCCCAG CACACTGACGATGTCTCCACTGAGGAGCTCCGTGCCACCATTAAGGAGAAGATTGTTCAGAAGGTCATCCCCGCC GAGCTCCTCGATGATCGCACTGTCTACCACATCCAGCCCTCCGGTCGCTTTGTCATCGGTGGTCCTCAGGGTGAT GCCGGTCTCACTGGCCGTAAGATCATCGTCGACACCTACGGTGGCTGGGGTGCCCACGGTGGTGGTGCTTTCTCC GGAAAGGATTACTCCAAGGTCGATCGTTCCGCCGCCTACGTTGCGCGCTGGATCGCCAAGTCTTTGGTCAACGCC AAGCTTGCCCGCCGTGCCCTCGTCCAGCTCTCCTACGCCATTGGTGTCGCTGAGCCCCTCTCCATCTTCGTTGAG ACCTACGGTACTTCCTCCAAGACCTCCGACGAGCTGGTCCAGATCATCCGTGACAACTTTGATCTCCGTCCCGGT GTCATCGTGAAGGACCTCGACTTGGCCAAGCCCATCTACTACCAGACCGCCAAGAACGGCCACTTCACTAACCAG GAGTTCTCCTGGGAGTCACCCCGTACCCTCAAGTTCTAA |
| Transcript | >Pro_DTO377G3_2|g8638.t1 ATGGGTTCAGTTGCAAACAGCGGCACTTTCCTCTTCACTTCCGAGTCTGTCGGTGAGGGTCACCCCGATAAGATT GCTGATCAGGTTTCCGATGCTATCCTCGATGCCTGCCTTGCTGAGGATCCCCTCTCCAAGGTCGCTTGCGAGACG GCCACCAAGACCGGTATGATCATGGTCTTCGGTGAGATTACCACCAAAGCCCACCTGGACTACCAGAAGATTATC CGTGGCGCTATCAAGGACATCGGTTACGATGCCTCCGAGAAGGGCTTCGACTACAAGACCTGTAACGTCTTGGTT GCCATTGAGCAGCAGTCTCCCGATATCGCTCAGGGTCTTCACTACGAGGAGGCCCTTGAGAAGCTCGGTGCCGGT GACCAGGGTATCATGTTCGGCTATGCCACCGACGAGACCCCTGAGCTTCTGCCCTTGACTGTCCTCCTCGCCCAC AAGCTTAATGCTGCCATGAAGGCCGCCCGTCAGGATGGCTCCATCCCCTGGTTGCTCCCCGATACCAAGACCCAG GTTACCATTGAGTATGCCCACGACAACGGTGCCGTCAAGCCTCTGCGCGTCGACACTGTCGTCGTCTCCGCCCAG CACACTGACGATGTCTCCACTGAGGAGCTCCGTGCCACCATTAAGGAGAAGATTGTTCAGAAGGTCATCCCCGCC GAGCTCCTCGATGATCGCACTGTCTACCACATCCAGCCCTCCGGTCGCTTTGTCATCGGTGGTCCTCAGGGTGAT GCCGGTCTCACTGGCCGTAAGATCATCGTCGACACCTACGGTGGCTGGGGTGCCCACGGTGGTGGTGCTTTCTCC GGAAAGGATTACTCCAAGGTCGATCGTTCCGCCGCCTACGTTGCGCGCTGGATCGCCAAGTCTTTGGTCAACGCC AAGCTTGCCCGCCGTGCCCTCGTCCAGCTCTCCTACGCCATTGGTGTCGCTGAGCCCCTCTCCATCTTCGTTGAG ACCTACGGTACTTCCTCCAAGACCTCCGACGAGCTGGTCCAGATCATCCGTGACAACTTTGATCTCCGTCCCGGT GTCATCGTGAAGGACCTCGACTTGGCCAAGCCCATCTACTACCAGACCGCCAAGAACGGCCACTTCACTAACCAG GAGTTCTCCTGGGAGTCACCCCGTACCCTCAAGTTCTAA |
| Gene | >Pro_DTO377G3_2|g8638.t1 ATGGGTTCAGTTGCAAACAGCGGCACTTTCCTCTTCACTTCCGAGTCTGTCGGTGAGGGTCACCCCGATAAGATT GCGTGAGTTATACCCCTAAAACCTTTCACCTTTGCCCTCAGTGGATTATTAGATGGGCTCTGTACCATCAATTCC AATTGTAACAGTGTATTAATTCCCCAATAGTGATCAGGTTTCCGATGCTATCCTCGATGCCTGCCTTGCTGAGGA TCCCCTCTCCAAGGTCGCTTGCGAGACGGCCACCAAGACCGGTAGGTTCACTATAATTACTTCAGGCCAGATCTC AATCTGACGTGTCACATTAGGTATGATCATGGTCTTCGGTGAGATTACCACCAAAGCCCACCTGGACTACCAGAA GATTATCCGTGGCGCTATCAAGGACATCGGTTACGATGCCTCCGAGAAGGGCTTCGACTACAAGACCTGTAACGT CTTGGTTGCCATTGAGCAGCAGTCTCCCGATATCGCTCAGGGTCTTCACTACGAGGAGGCCCTTGAGAAGCTCGG TGCCGGTGACCAGGGTATCATGTTCGGCTATGCCACCGACGAGACCCCTGAGCTTCTGCCCTTGACTGTCCTCCT CGCCCACAAGCTTAATGCTGCCATGAAGGCCGCCCGTCAGGATGGCTCCATCCCCTGGTTGCTCCCCGATACCAA GACCCAGGTTACCATTGAGTATGCCCACGACAACGGTGCCGTCAAGCCTCTGCGCGTCGACACTGTCGTCGTCTC CGCCCAGCACACTGACGATGTCTCCACTGAGGAGCTCCGTGCCACCATTAAGGAGAAGATTGTTCAGAAGGTCAT CCCCGCCGAGCTCCTCGATGATCGCACTGTCTACCACATCCAGCCCTCCGGTCGCTTTGTCATCGGTGGTCCTCA GGGTGATGCCGGTCTCACTGGCCGTAAGATCATCGTCGACACCTACGGTGGCTGGGGTGCCCACGGTGGTGGTGC TTTCTCCGGAAAGGATTACTCCAAGGTCGATCGTTCCGCCGCCTACGTTGCGCGCTGGATCGCCAAGTCTTTGGT CAACGCCAAGCTTGCCCGCCGTGCCCTCGTCCAGCTCTCCTACGCCATTGGTGTCGCTGAGCCCCTCTCCATCTT CGTTGAGACCTACGGTACTTCCTCCAAGACCTCCGACGAGCTGGTCCAGATCATCCGTGACAACTTTGATCTCCG TCCCGGTGTCATCGTGAAGGACCTCGACTTGGCCAAGCCCATCTACTACCAGACCGCCAAGAACGGCCACTTCAC TAACCAGGAGTTCTCCTGGGAGTCACCCCGTACCCTCAAGTTCTAA |