Protein ID | Pro_DTO377G3_2|g8637.t1 |
Gene name | |
Location | scaffold_35:150963..153994 |
Strand | - |
Gene length (bp) | 3031 |
Transcript length (bp) | 2904 |
Coding sequence length (bp) | 2904 |
Protein length (aa) | 968 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF08639 | SLD3 | DNA replication regulator SLD3 | 9.3E-163 | 289 | 812 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 11 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 12.66 | 6.87 | 18.45 |
5d_25C | Five days - 25 degrees Celsius | 9.46 | 4.80 | 14.12 |
7d_25C | Seven days - 25 degrees Celsius | 10.47 | 5.44 | 15.50 |
10d_25C | Ten days - 25 degrees Celsius | 9.24 | 4.67 | 13.80 |
7d_15C | Seven days - 15 degrees Celsius | 6.85 | 3.17 | 10.53 |
7d_30C | Seven days - 30 degrees Celsius | 8.55 | 4.24 | 12.85 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 0.300794 | no |
3d_25C | 7d_25C | 0.546605 | no |
3d_25C | 7d_15C | 0.020660 | yes |
3d_25C | 7d_30C | 0.146877 | no |
3d_25C | 10d_25C | 0.256842 | no |
5d_25C | 7d_25C | 0.779615 | no |
5d_25C | 7d_15C | 0.287707 | no |
5d_25C | 7d_30C | 0.787319 | no |
5d_25C | 10d_25C | 0.955968 | no |
7d_25C | 7d_15C | 0.132803 | no |
7d_25C | 7d_30C | 0.527174 | no |
7d_25C | 10d_25C | 0.722687 | no |
7d_15C | 7d_30C | 0.515980 | no |
7d_15C | 10d_25C | 0.334157 | no |
7d_30C | 10d_25C | 0.842083 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g8637.t1 MASRIVPNVLDPLSSSALNKLHEPTPPPIKKRKRDDQVLLDDTSRRLATSSIVIRAHSASLSDEPLILEPITALP RTRLPLSWLDDTPASRSDDQSGGLFTADIPSLEIDLCVKTEPIVLAVRLVPNGGLYIIERVKRGIYSLSKLARWV HEGNLVVAAKGWHGTDAADIDSVAVDETGAIPDGFDWWQAAQIDEPFSDDEVSERSAGLDIAVVFGPSESDLGDT EASFVGDGEHRSHSLAPSRSFDAVEGGSFLLPEPQGLGDLPAAMDADGVDSNVVDVQQSPEEWLDGMREHYLQAL YVSKTSVAYFAKGPLTRCRTAFQARDLEQPHGSTELIESYREAILATKKMDLKYRETLPLAIRDAALALSDDGAK SKKRKSKKKKMGKNGLYPGEEGFIHKWWKDRILNEYPAQETSREAESKKQISDLRLRETQLQILLILEVMGLEIT IASSTNKEKDVNGAQDTPKKAKPKKPTDLNMLLELHLDRMCIWHAVTMEETSAADTAKASSFSSNHLSGKKVESD AVRDFCTEVIIPFYAARLPDKCKLITRKFGVSGSISSAAKKTQSSSKSRRVEPGGEVKRQQPAPKPRRTLQRVLT DDKAAASYARHPGLTRSNTAPTQHNAKHDIEPLLPTVLSGSVRGGIQKAKRTENREVDLNAVARQHETKLRKVQM LANQKKELDAAINALRKPNRELVSKDLADDASKRVVSGSGSRKSRNPVRNPFGEGVQVMATPRGNRRKDAGVGLP RSLAPSRSFAGVENSPFESPTMIPSSSRRAISFSGADSDPFNSHDNPRSSHLDGAIQETPTRPSSKLFQSDSITA RRPSSSSGKGLFRVPNLPAPRSSTQPIVPGSPNHSRPKDMSAFIENLSTSSRQFSQSLNHARTSAIMETPPKRQA PQSISTPTAVPFSLSLDAMVAESPRAHSPPAVMGTPVKGAAVVPVTPEKSQSKSIYAQLGWDDEMEF* |
Coding | >Pro_DTO377G3_2|g8637.t1 ATGGCCTCGCGCATTGTCCCCAACGTCCTAGATCCGCTCAGTTCATCCGCGCTGAACAAACTCCACGAACCGACC CCTCCACCTATAAAGAAGAGGAAAAGAGACGATCAAGTACTGCTAGATGATACTTCTAGACGGCTTGCTACCTCT TCCATCGTCATTAGAGCTCACTCGGCGTCTTTATCTGATGAACCCTTGATCCTCGAACCAATTACGGCCCTCCCC CGCACAAGGCTGCCCCTCTCGTGGCTCGACGATACGCCTGCATCCCGATCCGACGATCAATCCGGCGGCCTTTTC ACCGCGGACATCCCCTCGTTAGAAATTGACTTGTGCGTAAAGACGGAACCGATCGTCCTCGCAGTGCGCCTAGTG CCCAATGGTGGCCTGTACATTATTGAGAGGGTGAAGAGAGGAATATACTCGCTCTCCAAGCTCGCCCGATGGGTG CACGAGGGCAATCTAGTTGTTGCGGCCAAGGGATGGCATGGAACTGATGCTGCGGATATAGATAGCGTTGCTGTC GATGAGACCGGGGCTATTCCCGATGGGTTTGACTGGTGGCAGGCTGCTCAGATCGATGAGCCCTTCTCCGACGAT GAGGTGAGTGAAAGGTCTGCTGGGCTGGATATTGCGGTTGTCTTTGGTCCGTCTGAGTCGGACCTCGGGGATACC GAGGCATCCTTTGTGGGTGATGGAGAGCACCGGAGCCATTCGCTTGCTCCGTCGAGGAGTTTTGATGCCGTTGAA GGGGGCTCTTTCTTGCTTCCTGAACCTCAGGGCTTGGGGGATTTACCTGCGGCTATGGATGCTGATGGTGTCGAT TCCAATGTTGTGGATGTGCAACAGTCGCCTGAGGAGTGGCTGGACGGGATGAGAGAGCACTATCTGCAGGCTCTC TACGTTTCAAAGACTTCTGTGGCGTACTTTGCGAAGGGCCCGTTAACACGCTGTCGGACTGCTTTCCAGGCTCGT GACTTGGAACAGCCTCATGGCTCGACGGAGTTGATCGAATCCTATCGCGAGGCTATCCTCGCTACGAAGAAAATG GACCTCAAATACAGAGAAACATTGCCCCTGGCAATTCGCGATGCAGCTCTTGCGCTTTCTGATGATGGCGCAAAA TCTAAGAAGCGGAAAAGTAAGAAAAAGAAGATGGGGAAGAATGGCCTTTACCCAGGGGAGGAAGGATTCATCCAC AAGTGGTGGAAGGACAGAATCTTGAATGAATATCCTGCACAGGAAACGTCGCGTGAAGCAGAGTCTAAGAAACAG ATTTCGGATCTCCGCCTCCGCGAGACACAATTGCAGATCCTGCTGATTTTGGAAGTCATGGGGTTGGAAATCACC ATTGCTTCCAGCACTAACAAGGAGAAAGATGTAAATGGGGCGCAAGATACGCCGAAGAAAGCCAAGCCTAAGAAG CCAACGGATTTGAACATGCTTCTTGAACTCCATCTCGATCGGATGTGTATTTGGCACGCTGTGACAATGGAAGAA ACATCGGCCGCCGATACAGCAAAGGCTTCTTCTTTCAGTAGCAACCATCTTTCAGGCAAGAAAGTCGAGAGCGAT GCGGTGCGTGACTTCTGCACAGAAGTCATCATTCCATTCTATGCTGCGCGTCTCCCGGACAAATGCAAGCTGATC ACCCGCAAATTCGGGGTATCCGGCAGTATTTCCTCGGCTGCTAAAAAGACACAATCTTCGAGTAAATCACGCCGT GTGGAACCCGGGGGGGAAGTCAAGCGACAACAGCCTGCACCGAAGCCCCGACGGACATTACAGCGAGTACTTACG GACGATAAAGCGGCAGCGTCCTATGCTCGGCACCCAGGACTGACTCGATCCAACACTGCGCCGACCCAGCATAAT GCGAAGCACGATATTGAACCCTTGCTGCCCACTGTTCTCAGCGGCAGTGTCCGGGGTGGCATTCAGAAAGCAAAA CGCACCGAAAACCGCGAGGTTGATCTTAACGCCGTAGCACGACAGCATGAGACTAAATTGAGAAAGGTCCAAATG CTGGCCAACCAGAAGAAAGAGCTGGATGCTGCTATTAACGCACTTCGGAAGCCGAACAGAGAGCTCGTCTCCAAG GATCTGGCAGACGATGCGTCGAAACGGGTTGTAAGTGGCAGCGGTTCAAGGAAGTCAAGAAATCCCGTGCGCAAT CCGTTCGGCGAAGGTGTACAGGTCATGGCGACTCCTCGAGGCAATCGAAGGAAGGACGCGGGGGTCGGGCTACCT CGTAGCCTGGCTCCATCCCGGTCATTTGCTGGTGTGGAAAATTCTCCTTTCGAGTCTCCCACCATGATCCCGTCC TCGAGTCGACGGGCGATCTCATTCTCTGGCGCTGACTCCGATCCTTTCAATTCTCATGACAATCCACGATCAAGT CATCTGGACGGAGCTATTCAAGAAACTCCAACTAGGCCATCTTCCAAACTTTTCCAGAGTGATAGCATAACTGCG CGTCGCCCATCATCCTCCTCCGGCAAGGGCCTTTTCAGGGTACCCAACCTTCCAGCGCCTCGCTCATCTACACAA CCAATAGTCCCAGGTTCCCCCAACCATTCACGCCCTAAGGACATGTCCGCATTCATAGAAAACTTGTCGACATCA TCTCGACAATTCAGCCAGTCTCTCAATCATGCTCGCACCTCGGCAATCATGGAGACGCCACCCAAAAGACAGGCA CCGCAGAGTATATCTACTCCCACCGCTGTGCCGTTTTCTCTATCGCTTGATGCCATGGTCGCCGAGAGTCCTCGC GCTCACTCCCCACCTGCGGTCATGGGAACCCCCGTCAAAGGTGCTGCAGTTGTGCCAGTAACTCCCGAGAAATCC CAATCCAAATCGATATACGCGCAGCTGGGCTGGGATGACGAGATGGAATTCTAA |
Transcript | >Pro_DTO377G3_2|g8637.t1 ATGGCCTCGCGCATTGTCCCCAACGTCCTAGATCCGCTCAGTTCATCCGCGCTGAACAAACTCCACGAACCGACC CCTCCACCTATAAAGAAGAGGAAAAGAGACGATCAAGTACTGCTAGATGATACTTCTAGACGGCTTGCTACCTCT TCCATCGTCATTAGAGCTCACTCGGCGTCTTTATCTGATGAACCCTTGATCCTCGAACCAATTACGGCCCTCCCC CGCACAAGGCTGCCCCTCTCGTGGCTCGACGATACGCCTGCATCCCGATCCGACGATCAATCCGGCGGCCTTTTC ACCGCGGACATCCCCTCGTTAGAAATTGACTTGTGCGTAAAGACGGAACCGATCGTCCTCGCAGTGCGCCTAGTG CCCAATGGTGGCCTGTACATTATTGAGAGGGTGAAGAGAGGAATATACTCGCTCTCCAAGCTCGCCCGATGGGTG CACGAGGGCAATCTAGTTGTTGCGGCCAAGGGATGGCATGGAACTGATGCTGCGGATATAGATAGCGTTGCTGTC GATGAGACCGGGGCTATTCCCGATGGGTTTGACTGGTGGCAGGCTGCTCAGATCGATGAGCCCTTCTCCGACGAT GAGGTGAGTGAAAGGTCTGCTGGGCTGGATATTGCGGTTGTCTTTGGTCCGTCTGAGTCGGACCTCGGGGATACC GAGGCATCCTTTGTGGGTGATGGAGAGCACCGGAGCCATTCGCTTGCTCCGTCGAGGAGTTTTGATGCCGTTGAA GGGGGCTCTTTCTTGCTTCCTGAACCTCAGGGCTTGGGGGATTTACCTGCGGCTATGGATGCTGATGGTGTCGAT TCCAATGTTGTGGATGTGCAACAGTCGCCTGAGGAGTGGCTGGACGGGATGAGAGAGCACTATCTGCAGGCTCTC TACGTTTCAAAGACTTCTGTGGCGTACTTTGCGAAGGGCCCGTTAACACGCTGTCGGACTGCTTTCCAGGCTCGT GACTTGGAACAGCCTCATGGCTCGACGGAGTTGATCGAATCCTATCGCGAGGCTATCCTCGCTACGAAGAAAATG GACCTCAAATACAGAGAAACATTGCCCCTGGCAATTCGCGATGCAGCTCTTGCGCTTTCTGATGATGGCGCAAAA TCTAAGAAGCGGAAAAGTAAGAAAAAGAAGATGGGGAAGAATGGCCTTTACCCAGGGGAGGAAGGATTCATCCAC AAGTGGTGGAAGGACAGAATCTTGAATGAATATCCTGCACAGGAAACGTCGCGTGAAGCAGAGTCTAAGAAACAG ATTTCGGATCTCCGCCTCCGCGAGACACAATTGCAGATCCTGCTGATTTTGGAAGTCATGGGGTTGGAAATCACC ATTGCTTCCAGCACTAACAAGGAGAAAGATGTAAATGGGGCGCAAGATACGCCGAAGAAAGCCAAGCCTAAGAAG CCAACGGATTTGAACATGCTTCTTGAACTCCATCTCGATCGGATGTGTATTTGGCACGCTGTGACAATGGAAGAA ACATCGGCCGCCGATACAGCAAAGGCTTCTTCTTTCAGTAGCAACCATCTTTCAGGCAAGAAAGTCGAGAGCGAT GCGGTGCGTGACTTCTGCACAGAAGTCATCATTCCATTCTATGCTGCGCGTCTCCCGGACAAATGCAAGCTGATC ACCCGCAAATTCGGGGTATCCGGCAGTATTTCCTCGGCTGCTAAAAAGACACAATCTTCGAGTAAATCACGCCGT GTGGAACCCGGGGGGGAAGTCAAGCGACAACAGCCTGCACCGAAGCCCCGACGGACATTACAGCGAGTACTTACG GACGATAAAGCGGCAGCGTCCTATGCTCGGCACCCAGGACTGACTCGATCCAACACTGCGCCGACCCAGCATAAT GCGAAGCACGATATTGAACCCTTGCTGCCCACTGTTCTCAGCGGCAGTGTCCGGGGTGGCATTCAGAAAGCAAAA CGCACCGAAAACCGCGAGGTTGATCTTAACGCCGTAGCACGACAGCATGAGACTAAATTGAGAAAGGTCCAAATG CTGGCCAACCAGAAGAAAGAGCTGGATGCTGCTATTAACGCACTTCGGAAGCCGAACAGAGAGCTCGTCTCCAAG GATCTGGCAGACGATGCGTCGAAACGGGTTGTAAGTGGCAGCGGTTCAAGGAAGTCAAGAAATCCCGTGCGCAAT CCGTTCGGCGAAGGTGTACAGGTCATGGCGACTCCTCGAGGCAATCGAAGGAAGGACGCGGGGGTCGGGCTACCT CGTAGCCTGGCTCCATCCCGGTCATTTGCTGGTGTGGAAAATTCTCCTTTCGAGTCTCCCACCATGATCCCGTCC TCGAGTCGACGGGCGATCTCATTCTCTGGCGCTGACTCCGATCCTTTCAATTCTCATGACAATCCACGATCAAGT CATCTGGACGGAGCTATTCAAGAAACTCCAACTAGGCCATCTTCCAAACTTTTCCAGAGTGATAGCATAACTGCG CGTCGCCCATCATCCTCCTCCGGCAAGGGCCTTTTCAGGGTACCCAACCTTCCAGCGCCTCGCTCATCTACACAA CCAATAGTCCCAGGTTCCCCCAACCATTCACGCCCTAAGGACATGTCCGCATTCATAGAAAACTTGTCGACATCA TCTCGACAATTCAGCCAGTCTCTCAATCATGCTCGCACCTCGGCAATCATGGAGACGCCACCCAAAAGACAGGCA CCGCAGAGTATATCTACTCCCACCGCTGTGCCGTTTTCTCTATCGCTTGATGCCATGGTCGCCGAGAGTCCTCGC GCTCACTCCCCACCTGCGGTCATGGGAACCCCCGTCAAAGGTGCTGCAGTTGTGCCAGTAACTCCCGAGAAATCC CAATCCAAATCGATATACGCGCAGCTGGGCTGGGATGACGAGATGGAATTCTAA |
Gene | >Pro_DTO377G3_2|g8637.t1 ATGGCCTCGCGCATTGTCCCCAACGTCCTAGATCCGCTCAGTTCATCCGCGCTGAACAAACTCCACGAACCGACC CCTCCACCTATAAAGAAGAGGAAAAGAGACGATCAAGTACTGCTAGATGATACTTCTAGACGGCTTGCTACCTCT TCCATCGTCATTAGAGTGAGTCATGCTTACAACTGGCTCAGCATACGCTCAATCCATTGGTTGCTATTGCTCACT CTCCGCAACTTGTATAGGCTCACTCGGCGTCTTTATCTGATGAACCCTTGATCCTCGAACCAATTACGGCCCTCC CCCGCACAAGGCTGCCCCTCTCGTGGCTCGACGATACGCCTGCATCCCGATCCGACGATCAATCCGGCGGCCTTT TCACCGCGGACATCCCCTCGTTAGAAATTGACTTGTGCGTAAAGACGGAACCGATCGTCCTCGCAGTGCGCCTAG TGCCCAATGGTGGCCTGTACATTATTGAGAGGGTGAAGAGAGGAATATACTCGCTCTCCAAGCTCGCCCGATGGG TGCACGAGGGCAATCTAGTTGTTGCGGCCAAGGGATGGCATGGAACTGATGCTGCGGATATAGATAGCGTTGCTG TCGATGAGACCGGGGCTATTCCCGATGGGTTTGACTGGTGGCAGGCTGCTCAGATCGATGAGCCCTTCTCCGACG ATGAGGTGAGTGAAAGGTCTGCTGGGCTGGATATTGCGGTTGTCTTTGGTCCGTCTGAGTCGGACCTCGGGGATA CCGAGGCATCCTTTGTGGGTGATGGAGAGCACCGGAGCCATTCGCTTGCTCCGTCGAGGAGTTTTGATGCCGTTG AAGGGGGCTCTTTCTTGCTTCCTGAACCTCAGGGCTTGGGGGATTTACCTGCGGCTATGGATGCTGATGGTGTCG ATTCCAATGTTGTGGATGTGCAACAGTCGCCTGAGGAGTGGCTGGACGGGATGAGAGAGCACTATCTGCAGGCTC TCTACGTTTCAAAGGTGATTTGCTCTACTCGATATTAGGAGTTTGCCCGGCTGACATTTTCTAGACTTCTGTGGC GTACTTTGCGAAGGGCCCGTTAACACGCTGTCGGACTGCTTTCCAGGCTCGTGACTTGGAACAGCCTCATGGCTC GACGGAGTTGATCGAATCCTATCGCGAGGCTATCCTCGCTACGAAGAAAATGGACCTCAAATACAGAGAAACATT GCCCCTGGCAATTCGCGATGCAGCTCTTGCGCTTTCTGATGATGGCGCAAAATCTAAGAAGCGGAAAAGTAAGAA AAAGAAGATGGGGAAGAATGGCCTTTACCCAGGGGAGGAAGGATTCATCCACAAGTGGTGGAAGGACAGAATCTT GAATGAATATCCTGCACAGGAAACGTCGCGTGAAGCAGAGTCTAAGAAACAGATTTCGGATCTCCGCCTCCGCGA GACACAATTGCAGATCCTGCTGATTTTGGAAGTCATGGGGTTGGAAATCACCATTGCTTCCAGCACTAACAAGGA GAAAGATGTAAATGGGGCGCAAGATACGCCGAAGAAAGCCAAGCCTAAGAAGCCAACGGATTTGAACATGCTTCT TGAACTCCATCTCGATCGGATGTGTATTTGGCACGCTGTGACAATGGAAGAAACATCGGCCGCCGATACAGCAAA GGCTTCTTCTTTCAGTAGCAACCATCTTTCAGGCAAGAAAGTCGAGAGCGATGCGGTGCGTGACTTCTGCACAGA AGTCATCATTCCATTCTATGCTGCGCGTCTCCCGGACAAATGCAAGCTGATCACCCGCAAATTCGGGGTATCCGG CAGTATTTCCTCGGCTGCTAAAAAGACACAATCTTCGAGTAAATCACGCCGTGTGGAACCCGGGGGGGAAGTCAA GCGACAACAGCCTGCACCGAAGCCCCGACGGACATTACAGCGAGTACTTACGGACGATAAAGCGGCAGCGTCCTA TGCTCGGCACCCAGGACTGACTCGATCCAACACTGCGCCGACCCAGCATAATGCGAAGCACGATATTGAACCCTT GCTGCCCACTGTTCTCAGCGGCAGTGTCCGGGGTGGCATTCAGAAAGCAAAACGCACCGAAAACCGCGAGGTTGA TCTTAACGCCGTAGCACGACAGCATGAGACTAAATTGAGAAAGGTCCAAATGCTGGCCAACCAGAAGAAAGAGCT GGATGCTGCTATTAACGCACTTCGGAAGCCGAACAGAGAGCTCGTCTCCAAGGATCTGGCAGACGATGCGTCGAA ACGGGTTGTAAGTGGCAGCGGTTCAAGGAAGTCAAGAAATCCCGTGCGCAATCCGTTCGGCGAAGGTGTACAGGT CATGGCGACTCCTCGAGGCAATCGAAGGAAGGACGCGGGGGTCGGGCTACCTCGTAGCCTGGCTCCATCCCGGTC ATTTGCTGGTGTGGAAAATTCTCCTTTCGAGTCTCCCACCATGATCCCGTCCTCGAGTCGACGGGCGATCTCATT CTCTGGCGCTGACTCCGATCCTTTCAATTCTCATGACAATCCACGATCAAGTCATCTGGACGGAGCTATTCAAGA AACTCCAACTAGGCCATCTTCCAAACTTTTCCAGAGTGATAGCATAACTGCGCGTCGCCCATCATCCTCCTCCGG CAAGGGCCTTTTCAGGGTACCCAACCTTCCAGCGCCTCGCTCATCTACACAACCAATAGTCCCAGGTTCCCCCAA CCATTCACGCCCTAAGGACATGTCCGCATTCATAGAAAACTTGTCGACATCATCTCGACAATTCAGCCAGTCTCT CAATCATGCTCGCACCTCGGCAATCATGGAGACGCCACCCAAAAGACAGGCACCGCAGAGTATATCTACTCCCAC CGCTGTGCCGTTTTCTCTATCGCTTGATGCCATGGTCGCCGAGAGTCCTCGCGCTCACTCCCCACCTGCGGTCAT GGGAACCCCCGTCAAAGGTGCTGCAGTTGTGCCAGTAACTCCCGAGAAATCCCAATCCAAATCGATATACGCGCA GCTGGGCTGGGATGACGAGATGGAATTCTAA |