© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8629.t1 |
| Gene name | |
| Location | scaffold_35:115903..117639 |
| Strand | - |
| Gene length (bp) | 1736 |
| Transcript length (bp) | 1614 |
| Coding sequence length (bp) | 1614 |
| Protein length (aa) | 538 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08701 | GN3L_Grn1 | GNL3L/Grn1 putative GTPase | 2.4E-22 | 16 | 91 |
| PF01926 | MMR_HSR1 | 50S ribosome-binding GTPase | 1.8E-13 | 312 | 393 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005525 | GTP binding | Yes |
| GO:0019001 | guanyl nucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0003674 | molecular_function | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0032561 | guanyl ribonucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0017076 | purine nucleotide binding | No |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 46.40 | 27.70 | 65.10 |
| 5d_25C | Five days - 25 degrees Celsius | 43.72 | 25.88 | 61.56 |
| 7d_25C | Seven days - 25 degrees Celsius | 51.44 | 30.91 | 71.98 |
| 10d_25C | Ten days - 25 degrees Celsius | 41.87 | 24.57 | 59.17 |
| 7d_15C | Seven days - 15 degrees Celsius | 46.62 | 27.59 | 65.65 |
| 7d_30C | Seven days - 30 degrees Celsius | 43.90 | 25.92 | 61.88 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.856965 | no |
| 3d_25C | 7d_25C | 0.731853 | no |
| 3d_25C | 7d_15C | 0.989967 | no |
| 3d_25C | 7d_30C | 0.870703 | no |
| 3d_25C | 10d_25C | 0.726728 | no |
| 5d_25C | 7d_25C | 0.557530 | no |
| 5d_25C | 7d_15C | 0.846460 | no |
| 5d_25C | 7d_30C | 0.992023 | no |
| 5d_25C | 10d_25C | 0.900907 | no |
| 7d_25C | 7d_15C | 0.745260 | no |
| 7d_25C | 7d_30C | 0.563523 | no |
| 7d_25C | 10d_25C | 0.420406 | no |
| 7d_15C | 7d_30C | 0.861992 | no |
| 7d_15C | 10d_25C | 0.717693 | no |
| 7d_30C | 10d_25C | 0.888456 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 8219 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8629.t1 MVTKSGFGKTSKRVPVRLRHKIEKSAVQKARKQKKLAKKNPEWRSKLKKDPGIPNLFPGKDKLLHDIEERKRMKA EEQKRIREAAQTRKTEDLPATGTAAVDIDENDIMDDDMDAEGNDSNPMAALLASARARAVEYEDNQSDDEDMEED EDEDEDEMDEDLEEGATIDESAPPLVNSKSYSKESSRRQFDKVFKQVTDNADVVLYVLDARDPEGTRSKDIEREI MMADGGNKRLILILNKIDLVPPPVLKAWLLHLRRSFPTLPLKASSGTTSNAHTFDHKQLTIKGTSDTLFRALKSY AGAKQLKRAISVGVIGYPNVGKSSVINALTARLNKGSSNACPTGAEAGVTTSLRQVKLDSRLKLIDSPGIVFPSS DKSSKKNKKQEDQARLILLNAVPPKQIEDPIPAVNLLMKRLSSSENLLAKMLELYGITALFPGNGDKTTDFLVQV ARKRGRLGKHGIPNIESAAMTVINDWRDGRIQGWATAPVLPVVSADAPAGDIEPGVDTTKVVTEWAKEFSIEGLW GNGKGDDDEMVE* |
| Coding | >Pro_DTO377G3_2|g8629.t1 ATGGTTACTAAGAGCGGCTTTGGCAAGACTTCCAAGCGGGTTCCCGTCCGCCTGAGGCATAAGATTGAAAAGTCT GCTGTTCAGAAGGCGAGAAAGCAAAAGAAGCTCGCAAAGAAGAACCCTGAATGGCGGTCAAAACTTAAGAAGGAC CCCGGCATTCCTAATCTCTTCCCCGGCAAGGACAAGCTTCTCCATGACATTGAAGAGCGAAAGCGCATGAAGGCC GAGGAGCAAAAACGTATTCGAGAGGCAGCACAAACCCGCAAGACTGAAGACCTGCCCGCGACTGGCACCGCGGCT GTCGACATCGATGAGAACGATATTATGGATGATGATATGGATGCCGAGGGCAATGATTCGAACCCTATGGCTGCT CTTCTCGCCTCAGCACGCGCCCGTGCCGTAGAATACGAGGACAACCAAAGCGACGACGAAGACATGGAGGAAGAT GAAGACGAGGACGAGGATGAGATGGATGAAGACCTCGAGGAGGGCGCAACTATTGACGAATCTGCCCCGCCATTG GTCAACTCAAAGTCTTACTCAAAGGAGAGCTCAAGACGCCAATTCGACAAGGTATTCAAGCAGGTCACTGACAAC GCCGATGTCGTGCTATACGTGCTCGATGCCCGCGACCCGGAGGGTACCCGCTCTAAGGATATTGAGCGCGAGATC ATGATGGCGGACGGTGGTAACAAGCGATTGATTCTCATTTTGAACAAGATCGATCTGGTTCCGCCGCCGGTGCTC AAGGCTTGGTTGCTTCACCTGCGCCGCTCCTTCCCCACTCTCCCCCTTAAGGCATCCAGCGGCACCACTTCCAAC GCACACACCTTCGACCACAAGCAGTTGACAATCAAGGGTACTTCGGATACACTCTTCCGTGCCCTCAAGTCATAC GCCGGCGCCAAGCAGTTGAAGCGAGCCATCTCCGTCGGTGTCATTGGATACCCTAATGTCGGCAAGTCGTCCGTC ATCAACGCACTCACCGCACGTCTGAACAAGGGCTCAAGCAACGCATGCCCCACAGGCGCCGAGGCTGGTGTCACC ACTAGCCTGCGCCAGGTCAAGCTGGACAGCAGACTCAAGCTGATTGACTCGCCCGGAATCGTCTTCCCCAGCTCC GACAAGTCTAGCAAGAAGAACAAGAAGCAAGAGGATCAGGCGCGTTTGATTCTCCTCAACGCTGTCCCGCCCAAG CAGATCGAGGATCCCATTCCCGCAGTCAACCTCTTGATGAAGCGTTTATCCTCATCGGAGAACCTTCTCGCTAAG ATGCTCGAGTTGTACGGCATCACCGCCCTCTTCCCTGGCAATGGCGATAAAACCACCGACTTCTTGGTCCAAGTG GCACGCAAGCGCGGCCGTCTCGGAAAGCACGGTATCCCCAACATCGAGAGCGCTGCCATGACCGTTATCAACGAC TGGAGAGATGGCCGCATTCAAGGCTGGGCCACTGCACCCGTGCTGCCTGTGGTTTCGGCAGATGCTCCTGCTGGC GATATCGAGCCTGGTGTTGACACCACAAAGGTTGTCACCGAGTGGGCCAAGGAGTTCAGCATCGAGGGTCTCTGG GGCAATGGAAAAGGTGATGACGATGAGATGGTCGAGTAA |
| Transcript | >Pro_DTO377G3_2|g8629.t1 ATGGTTACTAAGAGCGGCTTTGGCAAGACTTCCAAGCGGGTTCCCGTCCGCCTGAGGCATAAGATTGAAAAGTCT GCTGTTCAGAAGGCGAGAAAGCAAAAGAAGCTCGCAAAGAAGAACCCTGAATGGCGGTCAAAACTTAAGAAGGAC CCCGGCATTCCTAATCTCTTCCCCGGCAAGGACAAGCTTCTCCATGACATTGAAGAGCGAAAGCGCATGAAGGCC GAGGAGCAAAAACGTATTCGAGAGGCAGCACAAACCCGCAAGACTGAAGACCTGCCCGCGACTGGCACCGCGGCT GTCGACATCGATGAGAACGATATTATGGATGATGATATGGATGCCGAGGGCAATGATTCGAACCCTATGGCTGCT CTTCTCGCCTCAGCACGCGCCCGTGCCGTAGAATACGAGGACAACCAAAGCGACGACGAAGACATGGAGGAAGAT GAAGACGAGGACGAGGATGAGATGGATGAAGACCTCGAGGAGGGCGCAACTATTGACGAATCTGCCCCGCCATTG GTCAACTCAAAGTCTTACTCAAAGGAGAGCTCAAGACGCCAATTCGACAAGGTATTCAAGCAGGTCACTGACAAC GCCGATGTCGTGCTATACGTGCTCGATGCCCGCGACCCGGAGGGTACCCGCTCTAAGGATATTGAGCGCGAGATC ATGATGGCGGACGGTGGTAACAAGCGATTGATTCTCATTTTGAACAAGATCGATCTGGTTCCGCCGCCGGTGCTC AAGGCTTGGTTGCTTCACCTGCGCCGCTCCTTCCCCACTCTCCCCCTTAAGGCATCCAGCGGCACCACTTCCAAC GCACACACCTTCGACCACAAGCAGTTGACAATCAAGGGTACTTCGGATACACTCTTCCGTGCCCTCAAGTCATAC GCCGGCGCCAAGCAGTTGAAGCGAGCCATCTCCGTCGGTGTCATTGGATACCCTAATGTCGGCAAGTCGTCCGTC ATCAACGCACTCACCGCACGTCTGAACAAGGGCTCAAGCAACGCATGCCCCACAGGCGCCGAGGCTGGTGTCACC ACTAGCCTGCGCCAGGTCAAGCTGGACAGCAGACTCAAGCTGATTGACTCGCCCGGAATCGTCTTCCCCAGCTCC GACAAGTCTAGCAAGAAGAACAAGAAGCAAGAGGATCAGGCGCGTTTGATTCTCCTCAACGCTGTCCCGCCCAAG CAGATCGAGGATCCCATTCCCGCAGTCAACCTCTTGATGAAGCGTTTATCCTCATCGGAGAACCTTCTCGCTAAG ATGCTCGAGTTGTACGGCATCACCGCCCTCTTCCCTGGCAATGGCGATAAAACCACCGACTTCTTGGTCCAAGTG GCACGCAAGCGCGGCCGTCTCGGAAAGCACGGTATCCCCAACATCGAGAGCGCTGCCATGACCGTTATCAACGAC TGGAGAGATGGCCGCATTCAAGGCTGGGCCACTGCACCCGTGCTGCCTGTGGTTTCGGCAGATGCTCCTGCTGGC GATATCGAGCCTGGTGTTGACACCACAAAGGTTGTCACCGAGTGGGCCAAGGAGTTCAGCATCGAGGGTCTCTGG GGCAATGGAAAAGGTGATGACGATGAGATGGTCGAGTAA |
| Gene | >Pro_DTO377G3_2|g8629.t1 ATGGTTACTAAGAGCGGCTTTGGTATGATACTCTTTCACCTCTCGCTCATGCGGTTCTGAGGCGCAATTCTAACG GTCTACAGGCAAGACTTCCAAGCGGGTTCCCGTCCGCCTGAGGCATAAGATTGAAAAGTCTGCTGTTCAGAAGGC GAGAAAGCAAAAGAAGCTCGCAAAGAAGGTACTACAGACAATATCCGCGTGATGGTTCTGATCGAAGTTTCTGAC TATGTTCTTTGCAGAACCCTGAATGGCGGTCAAAACTTAAGAAGGACCCCGGCATTCCTAATCTCTTCCCCGGCA AGGACAAGCTTCTCCATGACATTGAAGAGCGAAAGCGCATGAAGGCCGAGGAGCAAAAACGTATTCGAGAGGCAG CACAAACCCGCAAGACTGAAGACCTGCCCGCGACTGGCACCGCGGCTGTCGACATCGATGAGAACGATATTATGG ATGATGATATGGATGCCGAGGGCAATGATTCGAACCCTATGGCTGCTCTTCTCGCCTCAGCACGCGCCCGTGCCG TAGAATACGAGGACAACCAAAGCGACGACGAAGACATGGAGGAAGATGAAGACGAGGACGAGGATGAGATGGATG AAGACCTCGAGGAGGGCGCAACTATTGACGAATCTGCCCCGCCATTGGTCAACTCAAAGTCTTACTCAAAGGAGA GCTCAAGACGCCAATTCGACAAGGTATTCAAGCAGGTCACTGACAACGCCGATGTCGTGCTATACGTGCTCGATG CCCGCGACCCGGAGGGTACCCGCTCTAAGGATATTGAGCGCGAGATCATGATGGCGGACGGTGGTAACAAGCGAT TGATTCTCATTTTGAACAAGATCGATCTGGTTCCGCCGCCGGTGCTCAAGGCTTGGTTGCTTCACCTGCGCCGCT CCTTCCCCACTCTCCCCCTTAAGGCATCCAGCGGCACCACTTCCAACGCACACACCTTCGACCACAAGCAGTTGA CAATCAAGGGTACTTCGGATACACTCTTCCGTGCCCTCAAGTCATACGCCGGCGCCAAGCAGTTGAAGCGAGCCA TCTCCGTCGGTGTCATTGGATACCCTAATGTCGGCAAGTCGTCCGTCATCAACGCACTCACCGCACGTCTGAACA AGGGCTCAAGCAACGCATGCCCCACAGGCGCCGAGGCTGGTGTCACCACTAGCCTGCGCCAGGTCAAGCTGGACA GCAGACTCAAGCTGATTGACTCGCCCGGAATCGTCTTCCCCAGCTCCGACAAGTCTAGCAAGAAGAACAAGAAGC AAGAGGATCAGGCGCGTTTGATTCTCCTCAACGCTGTCCCGCCCAAGCAGATCGAGGATCCCATTCCCGCAGTCA ACCTCTTGATGAAGCGTTTATCCTCATCGGAGAACCTTCTCGCTAAGATGCTCGAGTTGTACGGCATCACCGCCC TCTTCCCTGGCAATGGCGATAAAACCACCGACTTCTTGGTCCAAGTGGCACGCAAGCGCGGCCGTCTCGGAAAGC ACGGTATCCCCAACATCGAGAGCGCTGCCATGACCGTTATCAACGACTGGAGAGATGGCCGCATTCAAGGCTGGG CCACTGCACCCGTGCTGCCTGTGGTTTCGGCAGATGCTCCTGCTGGCGATATCGAGCCTGGTGTTGACACCACAA AGGTTGTCACCGAGTGGGCCAAGGAGTTCAGCATCGAGGGTCTCTGGGGCAATGGAAAAGGTGATGACGATGAGA TGGTCGAGTAA |