© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8624.t1 |
| Gene name | |
| Location | scaffold_35:104720..105521 |
| Strand | - |
| Gene length (bp) | 801 |
| Transcript length (bp) | 684 |
| Coding sequence length (bp) | 684 |
| Protein length (aa) | 228 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12352 | V-SNARE_C | Snare region anchored in the vesicle membrane C-terminus | 1.2E-11 | 140 | 202 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 209 | 226 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 63.02 | 32.96 | 93.08 |
| 5d_25C | Five days - 25 degrees Celsius | 82.86 | 46.03 | 119.70 |
| 7d_25C | Seven days - 25 degrees Celsius | 84.05 | 46.54 | 121.55 |
| 10d_25C | Ten days - 25 degrees Celsius | 109.52 | 63.82 | 155.22 |
| 7d_15C | Seven days - 15 degrees Celsius | 72.85 | 39.39 | 106.32 |
| 7d_30C | Seven days - 30 degrees Celsius | 87.88 | 49.39 | 126.37 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.329678 | no |
| 3d_25C | 7d_25C | 0.297569 | no |
| 3d_25C | 7d_15C | 0.657598 | no |
| 3d_25C | 7d_30C | 0.210210 | no |
| 3d_25C | 10d_25C | 0.020140 | yes |
| 5d_25C | 7d_25C | 0.972956 | no |
| 5d_25C | 7d_15C | 0.697243 | no |
| 5d_25C | 7d_30C | 0.872372 | no |
| 5d_25C | 10d_25C | 0.277685 | no |
| 7d_25C | 7d_15C | 0.656426 | no |
| 7d_25C | 7d_30C | 0.905056 | no |
| 7d_25C | 10d_25C | 0.312771 | no |
| 7d_15C | 7d_30C | 0.528858 | no |
| 7d_15C | 10d_25C | 0.093253 | no |
| 7d_30C | 10d_25C | 0.413501 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8624.t1 MASSTSSGWTQLRQQARSLETQTENLFHTYSQFASITKPPPSPTEEELRLESQLKDLLERREAVIAQLSRLLDSE ATLTASALKQNNVSRHREILQDHRRELQRLTAAISESRDRANLLSNVRSDISSYRASNPAAAEAEYMLEERGRVE NSHSMMDGVLSQAYAINENFGVQSETIANINRRIVGAAGSVPGMNYLIGKIGNKKRRDAIILGCFIGFCFLMLLF FR* |
| Coding | >Pro_DTO377G3_2|g8624.t1 ATGGCATCCTCAACTAGCTCAGGTTGGACACAGCTCCGGCAACAAGCACGGTCGCTTGAAACTCAGACCGAGAAC CTTTTCCACACCTATTCACAATTTGCATCCATAACCAAACCTCCGCCGTCACCCACGGAGGAGGAGCTGCGGCTT GAATCGCAATTGAAAGACCTCCTCGAAAGACGCGAGGCTGTTATCGCCCAACTATCCCGTCTACTCGACTCCGAA GCCACCCTCACTGCCTCCGCCCTTAAACAGAACAATGTCTCCCGCCACCGCGAAATACTCCAAGACCACCGCCGC GAGCTTCAACGTCTGACCGCAGCTATTTCTGAATCGCGTGACCGCGCAAACCTACTCTCTAACGTCCGTTCAGAC ATCAGCTCCTATCGCGCATCCAACCCCGCCGCTGCCGAGGCCGAGTACATGCTTGAAGAGCGGGGCCGAGTCGAG AACAGCCACAGTATGATGGACGGCGTGCTGAGCCAGGCGTATGCCATCAATGAGAACTTCGGTGTCCAGAGCGAG ACTATTGCCAACATTAATCGGCGTATTGTCGGAGCTGCTGGCAGTGTCCCCGGTATGAACTATCTCATCGGCAAG ATTGGAAACAAGAAGAGGCGGGATGCTATTATCCTCGGATGCTTCATTGGGTTCTGCTTTTTGATGTTGCTGTTC TTCCGGTAA |
| Transcript | >Pro_DTO377G3_2|g8624.t1 ATGGCATCCTCAACTAGCTCAGGTTGGACACAGCTCCGGCAACAAGCACGGTCGCTTGAAACTCAGACCGAGAAC CTTTTCCACACCTATTCACAATTTGCATCCATAACCAAACCTCCGCCGTCACCCACGGAGGAGGAGCTGCGGCTT GAATCGCAATTGAAAGACCTCCTCGAAAGACGCGAGGCTGTTATCGCCCAACTATCCCGTCTACTCGACTCCGAA GCCACCCTCACTGCCTCCGCCCTTAAACAGAACAATGTCTCCCGCCACCGCGAAATACTCCAAGACCACCGCCGC GAGCTTCAACGTCTGACCGCAGCTATTTCTGAATCGCGTGACCGCGCAAACCTACTCTCTAACGTCCGTTCAGAC ATCAGCTCCTATCGCGCATCCAACCCCGCCGCTGCCGAGGCCGAGTACATGCTTGAAGAGCGGGGCCGAGTCGAG AACAGCCACAGTATGATGGACGGCGTGCTGAGCCAGGCGTATGCCATCAATGAGAACTTCGGTGTCCAGAGCGAG ACTATTGCCAACATTAATCGGCGTATTGTCGGAGCTGCTGGCAGTGTCCCCGGTATGAACTATCTCATCGGCAAG ATTGGAAACAAGAAGAGGCGGGATGCTATTATCCTCGGATGCTTCATTGGGTTCTGCTTTTTGATGTTGCTGTTC TTCCGGTAA |
| Gene | >Pro_DTO377G3_2|g8624.t1 ATGGCATCCTCAACTAGCTCAGGTTGGACACAGCTCCGGCAACAAGCACGGTCGCTTGAAACTCAGGTACCAATA TCTCCTCATCAGGAGCCCTATACGAATATTAACTGATGCAACGATAGACCGAGAACCTTTTCCACACCTATTCAC AATTTGCATCCATAACCAAACCTCCGCCGTCACCCACGGAGGAGGAGCTGCGGCTTGAATCGCAATTGAAAGACC TCCTCGAAAGAGTACGTCCATTCACCGACATGTAACAGAGAGAAAAGCACCGACAACTAATTGACCGTACAGCGC GAGGCTGTTATCGCCCAACTATCCCGTCTACTCGACTCCGAAGCCACCCTCACTGCCTCCGCCCTTAAACAGAAC AATGTCTCCCGCCACCGCGAAATACTCCAAGACCACCGCCGCGAGCTTCAACGTCTGACCGCAGCTATTTCTGAA TCGCGTGACCGCGCAAACCTACTCTCTAACGTCCGTTCAGACATCAGCTCCTATCGCGCATCCAACCCCGCCGCT GCCGAGGCCGAGTACATGCTTGAAGAGCGGGGCCGAGTCGAGAACAGCCACAGTATGATGGACGGCGTGCTGAGC CAGGCGTATGCCATCAATGAGAACTTCGGTGTCCAGAGCGAGACTATTGCCAACATTAATCGGCGTATTGTCGGA GCTGCTGGCAGTGTCCCCGGTATGAACTATCTCATCGGCAAGATTGGAAACAAGAAGAGGCGGGATGCTATTATC CTCGGATGCTTCATTGGGTTCTGCTTTTTGATGTTGCTGTTCTTCCGGTAA |