© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g8614.t1 |
| Gene name | |
| Location | scaffold_35:77158..77925 |
| Strand | + |
| Gene length (bp) | 767 |
| Transcript length (bp) | 702 |
| Coding sequence length (bp) | 702 |
| Protein length (aa) | 234 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00583 | Acetyltransf_1 | Acetyltransferase (GNAT) family | 7.7E-12 | 62 | 182 |
| PF13508 | Acetyltransf_7 | Acetyltransferase (GNAT) domain | 4.4E-11 | 126 | 183 |
| PF13673 | Acetyltransf_10 | Acetyltransferase (GNAT) domain | 1.4E-09 | 129 | 188 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008080 | N-acetyltransferase activity | Yes |
| GO:0016410 | N-acyltransferase activity | No |
| GO:0016407 | acetyltransferase activity | No |
| GO:0016740 | transferase activity | No |
| GO:0016746 | acyltransferase activity | No |
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 5.36 | 1.18 | 9.54 |
| 5d_25C | Five days - 25 degrees Celsius | 1.16 | 0.00 | 2.57 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.60 | 0.00 | 1.47 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.24 | 0.00 | 0.75 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.10 | 0.00 | 0.34 |
| 7d_30C | Seven days - 30 degrees Celsius | 3.32 | 0.45 | 6.19 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.014096 | yes |
| 3d_25C | 7d_25C | 0.015268 | yes |
| 3d_25C | 7d_15C | 0.311616 | no |
| 3d_25C | 7d_30C | 0.361470 | no |
| 3d_25C | 10d_25C | 0.049004 | yes |
| 5d_25C | 7d_25C | 0.445279 | no |
| 5d_25C | 7d_15C | 0.311648 | no |
| 5d_25C | 7d_30C | 0.085512 | no |
| 5d_25C | 10d_25C | 0.154084 | no |
| 7d_25C | 7d_15C | 1.000000 | no |
| 7d_25C | 7d_30C | 0.034793 | yes |
| 7d_25C | 10d_25C | 1.000000 | no |
| 7d_15C | 7d_30C | 0.305368 | no |
| 7d_15C | 10d_25C | 1.000000 | no |
| 7d_30C | 10d_25C | 0.051278 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8614.t1 MGFVVVPATLPDIRAIYDVWFAAFKGQLILDLIYPGTDLNDEAFRKVHTEGTLEYWKGLSMEHTFQCIDTDTGKI AGMATWQVYWRERTAEERQKPWIGWLEGDQRERAEGFLGQLWEKREKWIGPKRHVYCHTVAVHPEYQGKGVGARL MQWGMSVAEQLNVPIYLESTVEGVPLYQKLGFQTLSEDILFKPEITRVDKEVRAPLMVKMPIAAGNMTFEEWVED KSPSVKAT* |
| Coding | >Pro_DTO377G3_2|g8614.t1 ATGGGCTTCGTTGTTGTCCCCGCCACTCTTCCCGATATCCGGGCCATCTACGATGTCTGGTTTGCGGCTTTCAAA GGCCAATTGATCCTAGACCTCATCTATCCAGGAACTGATCTCAACGATGAGGCTTTCCGCAAGGTCCACACAGAA GGGACTCTGGAATATTGGAAAGGATTGAGCATGGAGCACACTTTTCAATGCATTGACACCGACACCGGTAAAATC GCCGGCATGGCAACCTGGCAAGTCTACTGGCGGGAAAGGACCGCTGAAGAGCGTCAGAAGCCCTGGATTGGATGG TTGGAGGGTGACCAACGAGAGCGTGCCGAAGGGTTTTTGGGACAGCTTTGGGAGAAGAGGGAGAAGTGGATTGGC CCCAAGAGGCATGTGTACTGCCACACCGTTGCAGTGCATCCCGAATACCAAGGTAAAGGTGTCGGGGCACGGCTT ATGCAATGGGGAATGAGCGTTGCGGAGCAGCTGAATGTACCGATTTACCTTGAGTCGACGGTGGAGGGAGTCCCG TTGTATCAAAAACTTGGCTTCCAAACTCTCTCGGAGGACATCCTATTCAAGCCTGAAATTACCAGGGTCGACAAG GAGGTTCGAGCACCACTCATGGTGAAAATGCCCATAGCTGCGGGAAACATGACATTTGAGGAATGGGTGGAGGAC AAGAGTCCCTCTGTGAAAGCTACATAG |
| Transcript | >Pro_DTO377G3_2|g8614.t1 ATGGGCTTCGTTGTTGTCCCCGCCACTCTTCCCGATATCCGGGCCATCTACGATGTCTGGTTTGCGGCTTTCAAA GGCCAATTGATCCTAGACCTCATCTATCCAGGAACTGATCTCAACGATGAGGCTTTCCGCAAGGTCCACACAGAA GGGACTCTGGAATATTGGAAAGGATTGAGCATGGAGCACACTTTTCAATGCATTGACACCGACACCGGTAAAATC GCCGGCATGGCAACCTGGCAAGTCTACTGGCGGGAAAGGACCGCTGAAGAGCGTCAGAAGCCCTGGATTGGATGG TTGGAGGGTGACCAACGAGAGCGTGCCGAAGGGTTTTTGGGACAGCTTTGGGAGAAGAGGGAGAAGTGGATTGGC CCCAAGAGGCATGTGTACTGCCACACCGTTGCAGTGCATCCCGAATACCAAGGTAAAGGTGTCGGGGCACGGCTT ATGCAATGGGGAATGAGCGTTGCGGAGCAGCTGAATGTACCGATTTACCTTGAGTCGACGGTGGAGGGAGTCCCG TTGTATCAAAAACTTGGCTTCCAAACTCTCTCGGAGGACATCCTATTCAAGCCTGAAATTACCAGGGTCGACAAG GAGGTTCGAGCACCACTCATGGTGAAAATGCCCATAGCTGCGGGAAACATGACATTTGAGGAATGGGTGGAGGAC AAGAGTCCCTCTGTGAAAGCTACATAG |
| Gene | >Pro_DTO377G3_2|g8614.t1 ATGGGCTTCGTTGTTGTCCCCGCCACTCTTCCCGATATCCGGGCCATCTACGATGTCTGGTTTGCGGCTTTCAAA GGCCAATTGATCCTAGACCTCATCTATCCAGGAACTGATCTCAACGATGAGGCTTTCCGCAAGGTCCACACAGAA GGGACTCTGGAATATTGGAAAGGATTGAGCATGGAGCACACTTTTCAATGCATTGACACCGACACCGGTAAAATC GCCGGCATGGCAACCTGGCAAGTCTACTGGCGGGAAAGGACCGCTGAAGAGCGTCAGAAGCCCTGGATTGGATGG TTGGAGGGTGACCAACGAGAGCGTGCCGAAGGGTTTTTGGGACAGCTTTGGGAGAAGAGGGAGAAGTGGATTGGC CCCAAGAGGCATGTGTGTGAGTGGTCACCGATCCTTATATTGAAAAAACATTGAAAATGACCCTATGCTGACCGG AGATAGACTGCCACACCGTTGCAGTGCATCCCGAATACCAAGGTAAAGGTGTCGGGGCACGGCTTATGCAATGGG GAATGAGCGTTGCGGAGCAGCTGAATGTACCGATTTACCTTGAGTCGACGGTGGAGGGAGTCCCGTTGTATCAAA AACTTGGCTTCCAAACTCTCTCGGAGGACATCCTATTCAAGCCTGAAATTACCAGGGTCGACAAGGAGGTTCGAG CACCACTCATGGTGAAAATGCCCATAGCTGCGGGAAACATGACATTTGAGGAATGGGTGGAGGACAAGAGTCCCT CTGTGAAAGCTACATAG |