© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8609.t1 |
| Gene name | |
| Location | scaffold_35:60429..61548 |
| Strand | + |
| Gene length (bp) | 1119 |
| Transcript length (bp) | 1119 |
| Coding sequence length (bp) | 1119 |
| Protein length (aa) | 373 |
| Gene cluster ID | Type of secondary metabolism gene |
|---|---|
| Cluster 30 | (None) |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 54.30 | 31.65 | 76.94 |
| 5d_25C | Five days - 25 degrees Celsius | 69.91 | 41.72 | 98.10 |
| 7d_25C | Seven days - 25 degrees Celsius | 76.17 | 45.67 | 106.68 |
| 10d_25C | Ten days - 25 degrees Celsius | 93.15 | 56.73 | 129.57 |
| 7d_15C | Seven days - 15 degrees Celsius | 62.99 | 37.05 | 88.93 |
| 7d_30C | Seven days - 30 degrees Celsius | 72.58 | 43.34 | 101.82 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.304669 | no |
| 3d_25C | 7d_25C | 0.149400 | no |
| 3d_25C | 7d_15C | 0.597680 | no |
| 3d_25C | 7d_30C | 0.224264 | no |
| 3d_25C | 10d_25C | 0.007779 | yes |
| 5d_25C | 7d_25C | 0.780378 | no |
| 5d_25C | 7d_15C | 0.723513 | no |
| 5d_25C | 7d_30C | 0.912283 | no |
| 5d_25C | 10d_25C | 0.214011 | no |
| 7d_25C | 7d_15C | 0.461666 | no |
| 7d_25C | 7d_30C | 0.883812 | no |
| 7d_25C | 10d_25C | 0.425141 | no |
| 7d_15C | 7d_30C | 0.607826 | no |
| 7d_15C | 10d_25C | 0.071215 | no |
| 7d_30C | 10d_25C | 0.295000 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 6411 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8609.t1 MHSSRLRKRHAERLETIQDLVPSLPAAPLTSPLFTVFPAEIRNRVYTFALESEDVLTDDSSHSLYKQNAFYYRPG YKQPKRIQTALLQTCQQIYAEASLLPPAVNEHTFWFYRSPPHVNDASSPLNYFRKMTPKQRAQVQHLHLFTQQYF LEDNHWSQIWEGLKIGDDGRSLRGECRIAPKKMTITFRHTDWWYWENNDPLGIDPFRPGRTHATDMGKAVSPHDA ARSWGNQFSSIPCLEELVIEFETIMRKRDQLDDIIQQALEWKFPMEADKGLYLVADPKSKSAYTWAGAKEAELKR QRPVRPVDAEAESESAHEQEPVPAAPALVPYDPQSDSGTNSDINLGNHPPSDTDTEKFYVVFLTWRKQRVLE* |
| Coding | >Pro_DTO377G3_2|g8609.t1 ATGCATTCAAGTCGACTAAGAAAACGCCATGCAGAGAGGTTGGAGACCATCCAGGACCTTGTCCCATCTCTACCT GCAGCCCCATTGACATCCCCGCTATTTACCGTCTTCCCCGCCGAGATCCGCAATCGCGTTTATACGTTCGCCCTT GAGTCCGAGGATGTTCTCACAGACGACAGTTCTCACTCCCTCTACAAGCAAAATGCTTTCTACTACCGACCCGGT TATAAGCAGCCCAAGCGCATCCAAACTGCCCTCCTCCAGACATGTCAGCAAATCTACGCTGAGGCGTCCCTCCTC CCACCGGCTGTAAATGAGCATACTTTCTGGTTTTATCGGTCTCCGCCGCATGTCAATGATGCGTCGTCACCGCTA AATTACTTTCGCAAGATGACCCCAAAACAGCGGGCTCAGGTGCAGCATCTGCACCTGTTCACCCAACAGTATTTC CTAGAGGACAACCATTGGTCTCAGATATGGGAGGGGTTGAAGATAGGCGACGACGGGCGCAGTTTGCGAGGGGAG TGCCGGATCGCCCCGAAGAAGATGACCATCACCTTTCGCCACACGGACTGGTGGTACTGGGAGAACAATGACCCC CTGGGCATCGATCCGTTCCGGCCCGGAAGAACACATGCAACCGATATGGGCAAGGCTGTTTCCCCGCACGACGCC GCTCGATCATGGGGGAACCAATTCAGCTCTATCCCCTGCCTTGAAGAATTGGTGATCGAGTTCGAGACCATCATG CGGAAGAGGGACCAGCTAGATGACATCATACAACAAGCTCTCGAGTGGAAATTTCCCATGGAGGCTGACAAGGGC TTATATCTGGTGGCTGACCCCAAGTCGAAGAGCGCATATACTTGGGCTGGGGCGAAAGAGGCGGAGCTGAAAAGA CAGAGACCTGTACGACCGGTCGATGCTGAGGCTGAGTCAGAATCTGCCCACGAACAGGAGCCGGTTCCTGCAGCT CCGGCTTTGGTGCCGTATGATCCTCAGTCCGATTCAGGCACAAATAGCGACATTAATCTTGGAAACCATCCCCCA TCTGACACAGATACGGAGAAGTTCTATGTCGTCTTCTTGACTTGGAGGAAACAGCGTGTCCTGGAGTGA |
| Transcript | >Pro_DTO377G3_2|g8609.t1 ATGCATTCAAGTCGACTAAGAAAACGCCATGCAGAGAGGTTGGAGACCATCCAGGACCTTGTCCCATCTCTACCT GCAGCCCCATTGACATCCCCGCTATTTACCGTCTTCCCCGCCGAGATCCGCAATCGCGTTTATACGTTCGCCCTT GAGTCCGAGGATGTTCTCACAGACGACAGTTCTCACTCCCTCTACAAGCAAAATGCTTTCTACTACCGACCCGGT TATAAGCAGCCCAAGCGCATCCAAACTGCCCTCCTCCAGACATGTCAGCAAATCTACGCTGAGGCGTCCCTCCTC CCACCGGCTGTAAATGAGCATACTTTCTGGTTTTATCGGTCTCCGCCGCATGTCAATGATGCGTCGTCACCGCTA AATTACTTTCGCAAGATGACCCCAAAACAGCGGGCTCAGGTGCAGCATCTGCACCTGTTCACCCAACAGTATTTC CTAGAGGACAACCATTGGTCTCAGATATGGGAGGGGTTGAAGATAGGCGACGACGGGCGCAGTTTGCGAGGGGAG TGCCGGATCGCCCCGAAGAAGATGACCATCACCTTTCGCCACACGGACTGGTGGTACTGGGAGAACAATGACCCC CTGGGCATCGATCCGTTCCGGCCCGGAAGAACACATGCAACCGATATGGGCAAGGCTGTTTCCCCGCACGACGCC GCTCGATCATGGGGGAACCAATTCAGCTCTATCCCCTGCCTTGAAGAATTGGTGATCGAGTTCGAGACCATCATG CGGAAGAGGGACCAGCTAGATGACATCATACAACAAGCTCTCGAGTGGAAATTTCCCATGGAGGCTGACAAGGGC TTATATCTGGTGGCTGACCCCAAGTCGAAGAGCGCATATACTTGGGCTGGGGCGAAAGAGGCGGAGCTGAAAAGA CAGAGACCTGTACGACCGGTCGATGCTGAGGCTGAGTCAGAATCTGCCCACGAACAGGAGCCGGTTCCTGCAGCT CCGGCTTTGGTGCCGTATGATCCTCAGTCCGATTCAGGCACAAATAGCGACATTAATCTTGGAAACCATCCCCCA TCTGACACAGATACGGAGAAGTTCTATGTCGTCTTCTTGACTTGGAGGAAACAGCGTGTCCTGGAGTGA |
| Gene | >Pro_DTO377G3_2|g8609.t1 ATGCATTCAAGTCGACTAAGAAAACGCCATGCAGAGAGGTTGGAGACCATCCAGGACCTTGTCCCATCTCTACCT GCAGCCCCATTGACATCCCCGCTATTTACCGTCTTCCCCGCCGAGATCCGCAATCGCGTTTATACGTTCGCCCTT GAGTCCGAGGATGTTCTCACAGACGACAGTTCTCACTCCCTCTACAAGCAAAATGCTTTCTACTACCGACCCGGT TATAAGCAGCCCAAGCGCATCCAAACTGCCCTCCTCCAGACATGTCAGCAAATCTACGCTGAGGCGTCCCTCCTC CCACCGGCTGTAAATGAGCATACTTTCTGGTTTTATCGGTCTCCGCCGCATGTCAATGATGCGTCGTCACCGCTA AATTACTTTCGCAAGATGACCCCAAAACAGCGGGCTCAGGTGCAGCATCTGCACCTGTTCACCCAACAGTATTTC CTAGAGGACAACCATTGGTCTCAGATATGGGAGGGGTTGAAGATAGGCGACGACGGGCGCAGTTTGCGAGGGGAG TGCCGGATCGCCCCGAAGAAGATGACCATCACCTTTCGCCACACGGACTGGTGGTACTGGGAGAACAATGACCCC CTGGGCATCGATCCGTTCCGGCCCGGAAGAACACATGCAACCGATATGGGCAAGGCTGTTTCCCCGCACGACGCC GCTCGATCATGGGGGAACCAATTCAGCTCTATCCCCTGCCTTGAAGAATTGGTGATCGAGTTCGAGACCATCATG CGGAAGAGGGACCAGCTAGATGACATCATACAACAAGCTCTCGAGTGGAAATTTCCCATGGAGGCTGACAAGGGC TTATATCTGGTGGCTGACCCCAAGTCGAAGAGCGCATATACTTGGGCTGGGGCGAAAGAGGCGGAGCTGAAAAGA CAGAGACCTGTACGACCGGTCGATGCTGAGGCTGAGTCAGAATCTGCCCACGAACAGGAGCCGGTTCCTGCAGCT CCGGCTTTGGTGCCGTATGATCCTCAGTCCGATTCAGGCACAAATAGCGACATTAATCTTGGAAACCATCCCCCA TCTGACACAGATACGGAGAAGTTCTATGTCGTCTTCTTGACTTGGAGGAAACAGCGTGTCCTGGAGTGA |